Wall clock time and date at job start Tue Mar 31 2020 11:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 H 1.09004 * 109.47620 * 55.81879 * 3 2 1 5 5 C 1.50707 * 109.46942 * 175.82009 * 3 2 1 6 6 H 1.07992 * 120.00027 * 120.00205 * 5 3 2 7 7 C 1.37875 * 119.99856 * 299.99370 * 5 3 2 8 8 N 1.31515 * 119.99865 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00068 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46930 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46653 * 120.00427 * 9 7 5 12 12 H 1.48496 * 109.46787 * 240.00351 * 9 7 5 13 13 N 1.46905 * 109.47474 * 295.81381 * 3 2 1 14 14 C 1.46844 * 111.00044 * 170.15702 * 13 3 2 15 15 C 1.53040 * 109.52250 * 185.84186 * 14 13 3 16 16 C 1.53122 * 109.27893 * 300.82818 * 15 14 13 17 17 N 1.46906 * 109.51759 * 297.68203 * 16 15 14 18 18 C 1.50702 * 109.52349 * 177.56138 * 16 15 14 19 19 C 1.38295 * 119.96804 * 330.12186 * 18 16 15 20 20 C 1.38241 * 120.10676 * 179.72875 * 19 18 16 21 21 C 1.38165 * 120.05925 * 0.27503 * 20 19 18 22 22 C 1.38709 * 119.94159 * 359.97438 * 21 20 19 23 23 O 1.35902 * 120.05537 * 179.97438 * 22 21 20 24 24 C 1.42907 * 116.99674 * 0.02562 * 23 22 21 25 25 C 1.38115 * 119.97438 * 150.39850 * 18 16 15 26 26 C 1.53117 * 109.21582 * 57.62052 * 16 15 14 27 27 C 1.46845 * 111.00250 * 294.37638 * 13 3 2 28 28 H 1.09003 * 109.46924 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47146 * 299.99945 * 1 2 3 30 30 H 1.09001 * 109.47240 * 60.00241 * 1 2 3 31 31 H 1.08999 * 109.47146 * 240.00055 * 2 1 3 32 32 H 1.09001 * 109.47240 * 119.99759 * 2 1 3 33 33 H 0.97001 * 119.99910 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46217 * 65.83130 * 14 13 3 35 35 H 1.08994 * 109.46638 * 305.86050 * 14 13 3 36 36 H 1.08992 * 109.50382 * 180.88081 * 15 14 13 37 37 H 1.09001 * 109.53697 * 60.78479 * 15 14 13 38 38 H 1.00904 * 110.99369 * 179.87354 * 17 16 15 39 39 H 1.00900 * 111.00286 * 303.82603 * 17 16 15 40 40 H 1.07999 * 119.94341 * 0.02562 * 19 18 16 41 41 H 1.08007 * 119.96594 * 180.25001 * 20 19 18 42 42 H 1.07999 * 120.02681 * 179.97438 * 21 20 19 43 43 H 1.08991 * 109.47322 * 300.00281 * 24 23 22 44 44 H 1.08997 * 109.46729 * 60.00246 * 24 23 22 45 45 H 1.09003 * 109.46591 * 179.97438 * 24 23 22 46 46 H 1.07999 * 120.02986 * 0.02562 * 25 18 16 47 47 H 1.08993 * 109.50634 * 62.31957 * 26 16 15 48 48 H 1.09002 * 109.50357 * 182.43790 * 26 16 15 49 49 H 1.08996 * 109.45768 * 294.17234 * 27 13 3 50 50 H 1.09003 * 109.46670 * 54.14736 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6167 1.9776 0.8502 5 6 3.5434 1.4438 0.1036 6 1 4.1382 1.8921 -0.6785 7 6 4.1596 0.8728 1.1968 8 7 3.4353 0.3265 2.1490 9 14 6.0232 0.8750 1.3256 10 1 6.6009 1.5466 0.1339 11 1 6.4336 1.6046 2.5522 12 1 6.5162 -0.5241 1.3935 13 7 1.6345 2.1053 -1.2468 14 6 1.8997 3.5483 -1.1860 15 6 1.3344 4.2253 -2.4367 16 6 1.9903 3.6187 -3.6802 17 7 3.4359 3.8781 -3.6486 18 6 1.3943 4.2392 -4.9174 19 6 0.0856 4.6860 -4.9044 20 6 -0.4623 5.2608 -6.0360 21 6 0.2950 5.3852 -7.1849 22 6 1.6063 4.9332 -7.2021 23 8 2.3531 5.0539 -8.3311 24 6 1.7240 5.6569 -9.4637 25 6 2.1538 4.3561 -6.0651 26 6 1.7417 2.1079 -3.6949 27 6 2.2939 1.4925 -2.4070 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8688 -0.0755 2.9180 34 1 2.9753 3.7181 -1.1359 35 1 1.4243 3.9679 -0.2995 36 1 1.5451 5.2940 -2.3987 37 1 0.2566 4.0683 -2.4805 38 1 3.8915 3.4852 -4.4586 39 1 3.6244 4.8663 -3.5714 40 1 -0.5079 4.5900 -4.0072 41 1 -1.4834 5.6126 -6.0220 42 1 -0.1336 5.8339 -8.0688 43 1 0.8521 5.0692 -9.7507 44 1 1.4117 6.6697 -9.2093 45 1 2.4285 5.6921 -10.2946 46 1 3.1742 4.0027 -6.0763 47 1 0.6707 1.9159 -3.7587 48 1 2.2433 1.6649 -4.5553 49 1 3.3675 1.6719 -2.3512 50 1 2.1046 0.4190 -2.4074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162227.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:48 Heat of formation + Delta-G solvation = -7.210639 kcal Electronic energy + Delta-G solvation = -27937.478091 eV Core-core repulsion = 24350.652878 eV Total energy + Delta-G solvation = -3586.825213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.55253 -39.13828 -37.34715 -35.39862 -32.71931 -31.39049 -30.73301 -30.23157 -30.04171 -28.72521 -27.47201 -26.09443 -23.85564 -22.94542 -22.50711 -21.95953 -20.88842 -19.20922 -18.53986 -18.01637 -16.46025 -16.27626 -15.96840 -15.85797 -15.37643 -15.32524 -14.72256 -14.27032 -13.98303 -13.78979 -13.70978 -13.34084 -13.12551 -12.84654 -12.71260 -12.43768 -12.32102 -11.93767 -11.89674 -11.53012 -11.38205 -11.27920 -11.09213 -11.02447 -10.93863 -10.69332 -10.47850 -10.38210 -10.23924 -9.95829 -9.60811 -9.49608 -9.24409 -8.94879 -8.86853 -8.46477 -8.30781 -8.25075 -6.89019 -5.86799 -3.98955 1.20359 1.35022 3.03936 3.33251 3.41836 3.47136 3.64885 4.50035 4.58495 4.62094 4.74278 4.83135 4.84038 4.96281 5.12750 5.17616 5.20474 5.27058 5.34495 5.37460 5.40392 5.52272 5.86975 5.95708 6.09850 6.18287 6.18537 6.21835 6.27904 6.34679 6.41734 6.44812 6.54506 6.56049 6.63908 6.69698 6.75418 6.85871 7.04783 7.17499 7.21482 7.23456 7.29296 7.41187 7.49587 7.67449 7.75186 7.89345 8.13910 8.31386 8.50283 8.64208 9.13726 9.68209 11.11904 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.020277 B = 0.003268 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.572048 B = 8566.114986 C = 9346.040501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.534 4.534 6 H 0.063 0.937 7 C 0.065 3.935 8 N -0.890 5.890 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.534 5.534 14 C 0.070 3.930 15 C -0.099 4.099 16 C 0.162 3.838 17 N -0.823 5.823 18 C -0.061 4.061 19 C -0.147 4.147 20 C -0.080 4.080 21 C -0.218 4.218 22 C 0.126 3.874 23 O -0.320 6.320 24 C 0.029 3.971 25 C -0.155 4.155 26 C -0.096 4.096 27 C 0.070 3.930 28 H 0.023 0.977 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.090 0.910 33 H 0.258 0.742 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.336 0.664 39 H 0.338 0.662 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.065 0.935 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.527 10.062 -18.835 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.258 5.258 14 C -0.058 4.058 15 C -0.137 4.137 16 C 0.069 3.931 17 N -0.353 5.353 18 C -0.063 4.063 19 C -0.166 4.166 20 C -0.098 4.098 21 C -0.236 4.236 22 C 0.081 3.919 23 O -0.233 6.233 24 C -0.066 4.066 25 C -0.174 4.174 26 C -0.134 4.134 27 C -0.059 4.059 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.116 0.884 46 H 0.144 0.856 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.793 9.408 -18.063 21.469 hybrid contribution 1.505 0.788 -0.923 1.933 sum -5.287 10.196 -18.986 22.189 Atomic orbital electron populations 1.21702 0.99023 0.98216 1.00501 1.21595 0.92085 0.99423 1.01801 1.19227 0.92947 0.90932 0.86045 0.94772 1.21884 0.92941 1.36927 1.05576 0.91907 1.24918 0.97622 0.95320 0.95779 1.69895 1.34590 1.38717 1.09681 0.86655 0.86662 0.77516 0.77870 1.19821 1.21280 1.21248 1.62392 1.57296 1.01685 1.04443 1.21714 0.99678 0.89804 0.94649 1.21710 0.99769 0.98141 0.94091 1.19846 0.87202 0.95907 0.90165 1.58898 1.08641 1.19883 1.47837 1.20890 0.94220 0.95562 0.95669 1.21144 0.95411 1.01132 0.98917 1.20960 0.99249 0.97243 0.92347 1.21167 0.94248 1.07985 1.00241 1.18965 0.90198 0.96134 0.86587 1.86070 1.40479 1.77121 1.19649 1.23022 0.99264 0.97305 0.87046 1.20208 1.01254 1.04935 0.91027 1.21658 1.01104 0.91876 0.98784 1.21775 0.97980 0.97533 0.88563 0.95820 0.94369 0.93360 0.94964 0.89148 0.93192 0.93175 0.92617 0.92724 0.91239 0.84950 0.84921 0.85174 0.85940 0.85889 0.92734 0.92789 0.88367 0.85592 0.91651 0.92867 0.92832 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.79 37.16 0.36 -2.45 16 2 C -0.11 -2.64 5.14 -26.73 -0.14 -2.77 16 3 C 0.21 5.26 1.72 -68.86 -0.12 5.15 16 4 H 0.03 0.94 7.99 -51.93 -0.41 0.52 16 5 C -0.53 -14.28 7.23 -34.44 -0.25 -14.53 16 6 H 0.06 1.72 5.84 -52.49 -0.31 1.41 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.89 -25.26 11.29 55.43 0.63 -24.63 16 9 Si 0.88 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.53 -11.02 4.02 -228.07 -0.92 -11.93 16 14 C 0.07 1.34 5.04 -3.83 -0.02 1.32 16 15 C -0.10 -1.49 4.40 -26.65 -0.12 -1.60 16 16 C 0.16 2.28 0.69 -132.63 -0.09 2.19 16 17 N -0.82 -11.41 7.27 -0.09 0.00 -11.41 16 18 C -0.06 -0.78 4.82 -104.64 -0.50 -1.28 16 19 C -0.15 -1.76 9.14 -39.56 -0.36 -2.12 16 20 C -0.08 -0.84 10.04 -39.61 -0.40 -1.24 16 21 C -0.22 -2.28 9.04 -39.43 -0.36 -2.64 16 22 C 0.13 1.50 6.69 -39.22 -0.26 1.24 16 23 O -0.32 -3.55 10.50 -19.43 -0.20 -3.76 16 24 C 0.03 0.20 9.81 101.05 0.99 1.19 16 25 C -0.16 -1.94 9.23 -39.44 -0.36 -2.30 16 26 C -0.10 -1.51 5.03 -26.65 -0.13 -1.65 16 27 C 0.07 1.36 4.64 -3.83 -0.02 1.34 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.95 7.73 -51.93 -0.40 0.55 16 31 H 0.03 0.76 6.25 -51.93 -0.32 0.43 16 32 H 0.09 2.42 5.97 -51.93 -0.31 2.11 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.05 1.06 6.83 -51.93 -0.35 0.71 16 35 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.01 6.37 -51.93 -0.33 0.68 16 38 H 0.34 4.24 7.20 -39.29 -0.28 3.96 16 39 H 0.34 4.28 8.98 -39.29 -0.35 3.93 16 40 H 0.13 1.49 6.10 -52.49 -0.32 1.17 16 41 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.12 1.00 6.30 -52.49 -0.33 0.66 16 43 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 44 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.13 1.50 6.38 -52.49 -0.33 1.16 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.05 1.16 5.93 -51.93 -0.31 0.86 16 50 H 0.06 1.28 6.13 -51.93 -0.32 0.96 16 LS Contribution 374.23 15.07 5.64 5.64 Total: -1.00 -29.05 374.23 -9.74 -38.79 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -8.00 Total: 9.30 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.87 Total: -18.46 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.29 Total: -47.98 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.20 Total: -3.76 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.05 -9.74 -38.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162227.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.583 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds