Wall clock time and date at job start Tue Mar 31 2020 11:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 H 1.09004 * 109.47620 * 55.81879 * 3 2 1 5 5 C 1.50707 * 109.46942 * 175.82009 * 3 2 1 6 6 H 1.07992 * 120.00027 * 120.00205 * 5 3 2 7 7 C 1.37875 * 119.99856 * 299.99370 * 5 3 2 8 8 N 1.31515 * 119.99865 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00068 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46930 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46653 * 120.00427 * 9 7 5 12 12 H 1.48496 * 109.46787 * 240.00351 * 9 7 5 13 13 N 1.46905 * 109.47474 * 295.81381 * 3 2 1 14 14 C 1.46844 * 111.00044 * 170.15702 * 13 3 2 15 15 C 1.53040 * 109.52250 * 185.84186 * 14 13 3 16 16 C 1.53122 * 109.27893 * 300.82818 * 15 14 13 17 17 N 1.46906 * 109.51759 * 297.68203 * 16 15 14 18 18 C 1.50702 * 109.52349 * 177.56138 * 16 15 14 19 19 C 1.38295 * 119.96804 * 330.12186 * 18 16 15 20 20 C 1.38241 * 120.10676 * 179.72875 * 19 18 16 21 21 C 1.38165 * 120.05925 * 0.27503 * 20 19 18 22 22 C 1.38709 * 119.94159 * 359.97438 * 21 20 19 23 23 O 1.35902 * 120.05537 * 179.97438 * 22 21 20 24 24 C 1.42907 * 116.99674 * 0.02562 * 23 22 21 25 25 C 1.38115 * 119.97438 * 150.39850 * 18 16 15 26 26 C 1.53117 * 109.21582 * 57.62052 * 16 15 14 27 27 C 1.46845 * 111.00250 * 294.37638 * 13 3 2 28 28 H 1.09003 * 109.46924 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47146 * 299.99945 * 1 2 3 30 30 H 1.09001 * 109.47240 * 60.00241 * 1 2 3 31 31 H 1.08999 * 109.47146 * 240.00055 * 2 1 3 32 32 H 1.09001 * 109.47240 * 119.99759 * 2 1 3 33 33 H 0.97001 * 119.99910 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46217 * 65.83130 * 14 13 3 35 35 H 1.08994 * 109.46638 * 305.86050 * 14 13 3 36 36 H 1.08992 * 109.50382 * 180.88081 * 15 14 13 37 37 H 1.09001 * 109.53697 * 60.78479 * 15 14 13 38 38 H 1.00904 * 110.99369 * 179.87354 * 17 16 15 39 39 H 1.00900 * 111.00286 * 303.82603 * 17 16 15 40 40 H 1.07999 * 119.94341 * 0.02562 * 19 18 16 41 41 H 1.08007 * 119.96594 * 180.25001 * 20 19 18 42 42 H 1.07999 * 120.02681 * 179.97438 * 21 20 19 43 43 H 1.08991 * 109.47322 * 300.00281 * 24 23 22 44 44 H 1.08997 * 109.46729 * 60.00246 * 24 23 22 45 45 H 1.09003 * 109.46591 * 179.97438 * 24 23 22 46 46 H 1.07999 * 120.02986 * 0.02562 * 25 18 16 47 47 H 1.08993 * 109.50634 * 62.31957 * 26 16 15 48 48 H 1.09002 * 109.50357 * 182.43790 * 26 16 15 49 49 H 1.08996 * 109.45768 * 294.17234 * 27 13 3 50 50 H 1.09003 * 109.46670 * 54.14736 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6167 1.9776 0.8502 5 6 3.5434 1.4438 0.1036 6 1 4.1382 1.8921 -0.6785 7 6 4.1596 0.8728 1.1968 8 7 3.4353 0.3265 2.1490 9 14 6.0232 0.8750 1.3256 10 1 6.6009 1.5466 0.1339 11 1 6.4336 1.6046 2.5522 12 1 6.5162 -0.5241 1.3935 13 7 1.6345 2.1053 -1.2468 14 6 1.8997 3.5483 -1.1860 15 6 1.3344 4.2253 -2.4367 16 6 1.9903 3.6187 -3.6802 17 7 3.4359 3.8781 -3.6486 18 6 1.3943 4.2392 -4.9174 19 6 0.0856 4.6860 -4.9044 20 6 -0.4623 5.2608 -6.0360 21 6 0.2950 5.3852 -7.1849 22 6 1.6063 4.9332 -7.2021 23 8 2.3531 5.0539 -8.3311 24 6 1.7240 5.6569 -9.4637 25 6 2.1538 4.3561 -6.0651 26 6 1.7417 2.1079 -3.6949 27 6 2.2939 1.4925 -2.4070 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8688 -0.0755 2.9180 34 1 2.9753 3.7181 -1.1359 35 1 1.4243 3.9679 -0.2995 36 1 1.5451 5.2940 -2.3987 37 1 0.2566 4.0683 -2.4805 38 1 3.8915 3.4852 -4.4586 39 1 3.6244 4.8663 -3.5714 40 1 -0.5079 4.5900 -4.0072 41 1 -1.4834 5.6126 -6.0220 42 1 -0.1336 5.8339 -8.0688 43 1 0.8521 5.0692 -9.7507 44 1 1.4117 6.6697 -9.2093 45 1 2.4285 5.6921 -10.2946 46 1 3.1742 4.0027 -6.0763 47 1 0.6707 1.9159 -3.7587 48 1 2.2433 1.6649 -4.5553 49 1 3.3675 1.6719 -2.3512 50 1 2.1046 0.4190 -2.4074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162227.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:47 Heat of formation + Delta-G solvation = -25.069228 kcal Electronic energy + Delta-G solvation = -27938.252497 eV Core-core repulsion = 24350.652878 eV Total energy + Delta-G solvation = -3587.599620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48705 -40.27350 -38.55843 -36.75893 -34.46609 -33.15533 -31.81377 -31.50454 -31.08738 -30.07273 -28.08332 -27.93455 -25.39890 -24.29478 -23.99995 -22.98707 -22.11505 -20.90599 -19.98012 -18.90629 -18.14591 -17.29069 -17.06958 -16.82387 -16.64602 -16.44384 -16.15671 -15.71707 -15.46317 -15.10036 -14.80173 -14.59740 -14.55119 -14.33645 -13.85316 -13.72136 -13.44069 -13.19329 -13.13663 -12.96590 -12.90738 -12.86217 -12.61652 -12.43398 -12.17665 -12.13504 -11.99222 -11.75761 -11.72705 -11.60628 -11.47710 -11.13342 -10.93646 -10.85626 -10.36511 -9.84837 -9.53282 -9.14096 -8.71331 -7.94543 -6.16837 0.34764 0.50135 1.37205 1.40545 1.51221 2.35861 2.44894 2.78904 3.21703 3.48436 3.70008 3.75909 3.85726 3.98890 4.07617 4.19317 4.29586 4.38499 4.38714 4.52219 4.54077 4.61317 4.65265 4.72082 4.79758 4.81146 4.84103 4.91243 4.96389 5.01557 5.03718 5.06051 5.13746 5.26822 5.34324 5.37331 5.44766 5.47731 5.51812 5.59312 5.60921 5.65572 5.74952 5.82232 5.87415 6.16614 6.32325 6.34887 6.46478 6.52702 6.64776 6.85122 7.07387 7.53541 8.98642 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.020277 B = 0.003268 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.572048 B = 8566.114986 C = 9346.040501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.221 3.779 4 H -0.001 1.001 5 C -0.539 4.539 6 H 0.052 0.948 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.943 3.057 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 N -0.526 5.526 14 C 0.072 3.928 15 C -0.088 4.088 16 C 0.171 3.829 17 N -0.836 5.836 18 C -0.067 4.067 19 C -0.158 4.158 20 C -0.078 4.078 21 C -0.215 4.215 22 C 0.116 3.884 23 O -0.339 6.339 24 C 0.019 3.981 25 C -0.168 4.168 26 C -0.087 4.087 27 C 0.077 3.923 28 H 0.043 0.957 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.059 0.941 33 H 0.259 0.741 34 H 0.025 0.975 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.343 0.657 39 H 0.345 0.655 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.116 0.884 46 H 0.124 0.876 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 11.216 -21.274 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.114 3.886 4 H 0.017 0.983 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 N -0.250 5.250 14 C -0.056 4.056 15 C -0.126 4.126 16 C 0.078 3.922 17 N -0.367 5.367 18 C -0.070 4.070 19 C -0.177 4.177 20 C -0.096 4.096 21 C -0.233 4.233 22 C 0.071 3.929 23 O -0.253 6.253 24 C -0.075 4.075 25 C -0.187 4.187 26 C -0.126 4.126 27 C -0.051 4.051 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.134 0.866 46 H 0.142 0.858 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.848 10.575 -20.525 24.387 hybrid contribution 1.831 0.472 -0.239 1.906 sum -6.016 11.047 -20.764 24.277 Atomic orbital electron populations 1.21554 0.96274 0.99637 1.00691 1.21431 0.94505 0.98388 1.00066 1.18996 0.91583 0.91331 0.86721 0.98286 1.22074 0.94244 1.36341 1.05153 0.92970 1.25586 1.01439 0.95317 0.95697 1.70016 1.35975 1.39411 1.10077 0.85740 0.82116 0.77494 0.77657 1.19813 1.20961 1.20823 1.62362 1.56891 1.02465 1.03276 1.21711 0.98285 0.89012 0.96640 1.21619 1.00182 0.98559 0.92286 1.19605 0.87369 0.94608 0.90635 1.58874 1.08825 1.20557 1.48473 1.20595 0.94758 0.96711 0.94902 1.21282 0.95073 1.01515 0.99805 1.21272 1.00431 0.96255 0.91659 1.21488 0.93610 1.07047 1.01175 1.19120 0.90888 0.96165 0.86762 1.86047 1.41444 1.77532 1.20311 1.23321 1.00189 0.97789 0.86193 1.20256 1.01325 1.05600 0.91515 1.21554 1.01163 0.93169 0.96674 1.21690 0.96554 0.97056 0.89845 0.93779 0.94924 0.92290 0.95206 0.92230 0.93202 0.95707 0.93705 0.91158 0.90150 0.84234 0.84183 0.84785 0.83292 0.83386 0.91709 0.91674 0.86579 0.85822 0.91131 0.91834 0.95396 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.79 71.98 0.70 -4.35 16 2 C -0.11 -5.14 5.14 30.59 0.16 -4.98 16 3 C 0.22 11.21 1.72 44.17 0.08 11.29 16 4 H 0.00 -0.05 7.99 -2.39 -0.02 -0.06 16 5 C -0.54 -29.77 7.23 25.60 0.19 -29.59 16 6 H 0.05 2.95 5.84 -2.91 -0.02 2.94 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -53.38 11.29 21.45 0.24 -53.13 16 9 Si 0.94 45.05 29.54 68.60 2.03 47.08 16 10 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 N -0.53 -22.10 4.02 -875.49 -3.52 -25.62 16 14 C 0.07 2.80 5.04 86.33 0.44 3.23 16 15 C -0.09 -2.56 4.40 30.65 0.13 -2.43 16 16 C 0.17 4.64 0.69 2.86 0.00 4.64 16 17 N -0.84 -22.93 7.27 -154.19 -1.12 -24.05 16 18 C -0.07 -1.60 4.82 -19.88 -0.10 -1.69 16 19 C -0.16 -3.37 9.14 22.28 0.20 -3.16 16 20 C -0.08 -1.38 10.04 22.25 0.22 -1.16 16 21 C -0.21 -3.80 9.04 22.37 0.20 -3.60 16 22 C 0.12 2.51 6.69 22.51 0.15 2.66 16 23 O -0.34 -6.87 10.50 -92.45 -0.97 -7.84 16 24 C 0.02 0.21 9.81 113.37 1.11 1.32 16 25 C -0.17 -3.94 9.23 22.36 0.21 -3.74 16 26 C -0.09 -2.68 5.03 30.65 0.15 -2.52 16 27 C 0.08 3.03 4.64 86.33 0.40 3.43 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 2.25 7.73 -2.39 -0.02 2.23 16 31 H 0.03 1.43 6.25 -2.39 -0.01 1.41 16 32 H 0.06 3.29 5.97 -2.39 -0.01 3.27 16 33 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.02 1.08 6.83 -2.39 -0.02 1.07 16 35 H 0.04 1.80 8.02 -2.39 -0.02 1.78 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 2.18 6.37 -2.39 -0.02 2.17 16 38 H 0.34 8.54 7.20 -89.69 -0.65 7.90 16 39 H 0.34 8.56 8.98 -89.69 -0.81 7.76 16 40 H 0.13 2.69 6.10 -2.91 -0.02 2.67 16 41 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 42 H 0.15 1.80 6.30 -2.91 -0.02 1.78 16 43 H 0.06 0.57 7.66 -2.39 -0.02 0.56 16 44 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 45 H 0.12 0.81 8.14 -2.39 -0.02 0.80 16 46 H 0.12 2.85 6.38 -2.91 -0.02 2.83 16 47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.03 1.25 5.93 -2.39 -0.01 1.23 16 50 H 0.05 2.04 6.13 -2.39 -0.01 2.02 16 Total: -1.00 -64.07 374.23 0.86 -63.22 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.50 Total: 29.52 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 4.70 Total: -29.16 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -4.40 Total: -102.80 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.97 Total: -7.84 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.07 0.86 -63.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162227.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.146 kcal (2) G-P(sol) polarization free energy of solvation -64.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds