Wall clock time and date at job start Tue Mar 31 2020 12:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 109.47333 * 2 1 4 4 H 1.09001 * 109.47326 * 179.36524 * 3 2 1 5 5 C 1.50697 * 109.47349 * 59.36390 * 3 2 1 6 6 H 1.08003 * 120.00735 * 240.00049 * 5 3 2 7 7 C 1.37884 * 120.00145 * 60.00069 * 5 3 2 8 8 N 1.31517 * 119.99144 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00451 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47145 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47142 * 119.99977 * 9 7 5 12 12 H 1.48496 * 109.47105 * 239.99972 * 9 7 5 13 13 N 1.46903 * 109.47305 * 299.36744 * 3 2 1 14 14 C 1.46898 * 110.99747 * 273.13298 * 13 3 2 15 15 C 1.53004 * 109.47022 * 183.56726 * 14 13 3 16 16 C 1.50700 * 109.54522 * 305.02700 * 15 14 13 17 17 C 1.38228 * 119.61725 * 285.67754 * 16 15 14 18 18 C 1.38624 * 119.16095 * 179.72339 * 17 16 15 19 19 C 1.38664 * 118.42110 * 0.02562 * 18 17 16 20 20 C 1.38184 * 119.16626 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.61942 * 180.02562 * 20 19 18 22 22 N 1.31851 * 119.61802 * 105.40332 * 16 15 14 23 23 C 1.53177 * 109.61528 * 65.24985 * 15 14 13 24 24 C 1.53093 * 109.16584 * 62.93028 * 23 15 14 25 25 O 1.42900 * 109.41778 * 57.60638 * 24 23 15 26 26 C 1.42904 * 114.09765 * 298.84706 * 25 24 23 27 27 C 1.53091 * 109.41541 * 61.15542 * 26 25 24 28 28 H 1.09007 * 109.46634 * 304.76942 * 1 2 3 29 29 H 1.08994 * 109.47479 * 64.76659 * 1 2 3 30 30 H 1.09003 * 109.47048 * 184.77324 * 1 2 3 31 31 H 1.09003 * 109.46588 * 239.99667 * 2 1 3 32 32 H 1.09000 * 109.46917 * 120.00553 * 2 1 3 33 33 H 0.97004 * 119.99748 * 179.97438 * 8 7 5 34 34 H 1.00899 * 111.00312 * 149.17935 * 13 3 2 35 35 H 1.09001 * 109.47451 * 63.56977 * 14 13 3 36 36 H 1.08998 * 109.47423 * 303.56601 * 14 13 3 37 37 H 1.08007 * 120.41534 * 359.70301 * 17 16 15 38 38 H 1.08005 * 120.78741 * 180.02562 * 18 17 16 39 39 H 1.08002 * 120.42130 * 179.97438 * 19 18 17 40 40 H 1.08994 * 109.46941 * 90.00107 * 21 20 19 41 41 H 1.09000 * 109.46558 * 209.99998 * 21 20 19 42 42 H 1.08993 * 109.47098 * 329.99890 * 21 20 19 43 43 H 1.08999 * 109.52567 * 182.83237 * 23 15 14 44 44 H 1.08999 * 109.52227 * 303.02224 * 23 15 14 45 45 H 1.09006 * 109.47563 * 297.62431 * 24 23 15 46 46 H 1.08995 * 109.48330 * 177.59304 * 24 23 15 47 47 H 1.09002 * 109.48336 * 301.17087 * 26 25 24 48 48 H 1.09004 * 109.49039 * 181.14256 * 26 25 24 49 49 H 1.09000 * 109.52276 * 182.48639 * 27 26 25 50 50 H 1.09002 * 109.57379 * 62.32781 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4424 0.0114 5 6 1.5250 2.1574 1.2225 6 1 0.9052 3.0352 1.1137 7 6 1.8449 1.6910 2.4800 8 7 2.6001 0.6224 2.6124 9 14 1.2059 2.5768 3.9953 10 1 0.3842 3.7414 3.5782 11 1 0.3727 1.6460 4.7982 12 1 2.3521 3.0468 4.8141 13 7 1.5630 2.1305 -1.2070 14 6 2.4820 1.9167 -2.3328 15 6 2.0005 2.7186 -3.5437 16 6 0.5727 2.3516 -3.8561 17 6 0.2947 1.1360 -4.4527 18 6 -1.0225 0.8056 -4.7306 19 6 -2.0154 1.7142 -4.3971 20 6 -1.6615 2.9103 -3.8025 21 6 -2.7323 3.9051 -3.4352 22 7 -0.3974 3.1912 -3.5522 23 6 2.0890 4.2167 -3.2364 24 6 3.5531 4.5952 -2.9978 25 8 4.3271 4.2474 -4.1476 26 6 4.3202 2.8519 -4.4553 27 6 2.8870 2.4034 -4.7525 28 1 -0.3633 0.5861 0.8443 29 1 -0.3634 0.4381 -0.9295 30 1 -0.3633 -1.0241 0.0855 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.8255 0.2945 3.4970 34 1 1.4279 3.1151 -1.0325 35 1 2.5066 0.8567 -2.5856 36 1 3.4824 2.2468 -2.0530 37 1 1.0939 0.4526 -4.6995 38 1 -1.2696 -0.1373 -5.1959 39 1 -3.0523 1.4900 -4.5995 40 1 -3.0768 3.7097 -2.4198 41 1 -2.3254 4.9147 -3.4929 42 1 -3.5689 3.8104 -4.1273 43 1 1.6988 4.7853 -4.0805 44 1 1.5048 4.4406 -2.3439 45 1 3.9308 4.0565 -2.1288 46 1 3.6270 5.6682 -2.8209 47 1 4.7080 2.2903 -3.6053 48 1 4.9468 2.6689 -5.3282 49 1 2.8734 1.3305 -4.9441 50 1 2.5122 2.9345 -5.6274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162806.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:46 Heat of formation + Delta-G solvation = -23.301341 kcal Electronic energy + Delta-G solvation = -28817.180458 eV Core-core repulsion = 25229.657499 eV Total energy + Delta-G solvation = -3587.522958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.70177 -39.07815 -36.39968 -34.82558 -32.71274 -32.11592 -31.39702 -30.99243 -30.14971 -27.60154 -26.74026 -25.24926 -23.94007 -23.58739 -22.90652 -22.16056 -21.44281 -19.14006 -18.43764 -16.81113 -16.42517 -16.13452 -15.82653 -15.62929 -15.12024 -14.91484 -14.59707 -14.20971 -14.11781 -13.92388 -13.52606 -13.22704 -13.00508 -12.85854 -12.68008 -12.34187 -12.14066 -12.07878 -12.01168 -11.82609 -11.69466 -11.27504 -11.13098 -11.08144 -10.93383 -10.63086 -10.43933 -10.31013 -10.16988 -10.01129 -9.69456 -9.49613 -9.40542 -9.29798 -9.02446 -8.75310 -8.47978 -8.43530 -7.15376 -6.01445 -4.06198 1.40330 1.59017 3.28044 3.36527 3.40520 3.99803 4.03672 4.30390 4.40221 4.65314 4.87435 4.98032 5.03012 5.10501 5.17835 5.27629 5.30010 5.37467 5.39526 5.50613 5.57948 5.61296 5.68837 5.72949 5.75918 5.80158 5.82076 5.91346 5.98768 6.05475 6.15832 6.23087 6.28260 6.38897 6.41509 6.48309 6.55134 6.61295 6.69133 6.87163 7.00138 7.24214 7.31412 7.33953 7.51131 7.75466 7.81360 7.86164 8.28700 8.37502 8.43080 8.70964 9.04206 9.58598 11.04511 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.005200 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.230950 B = 5383.479091 C = 6581.800633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C 0.217 3.783 4 H -0.002 1.002 5 C -0.509 4.509 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.678 5.678 14 C 0.072 3.928 15 C -0.011 4.011 16 C 0.187 3.813 17 C -0.175 4.175 18 C -0.071 4.071 19 C -0.188 4.188 20 C 0.132 3.868 21 C -0.102 4.102 22 N -0.468 5.468 23 C -0.128 4.128 24 C 0.054 3.946 25 O -0.386 6.386 26 C 0.061 3.939 27 C -0.141 4.141 28 H 0.055 0.945 29 H 0.038 0.962 30 H 0.010 0.990 31 H 0.007 0.993 32 H 0.084 0.916 33 H 0.259 0.741 34 H 0.332 0.668 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.056 0.944 46 H 0.092 0.908 47 H 0.055 0.945 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 2.782 -15.995 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.138 4.138 3 C 0.110 3.890 4 H 0.016 0.984 5 C -0.547 4.547 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.310 5.310 14 C -0.059 4.059 15 C -0.012 4.012 16 C 0.049 3.951 17 C -0.194 4.194 18 C -0.097 4.097 19 C -0.208 4.208 20 C -0.006 4.006 21 C -0.159 4.159 22 N -0.177 5.177 23 C -0.166 4.166 24 C -0.022 4.022 25 O -0.305 6.305 26 C -0.016 4.016 27 C -0.180 4.180 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.025 0.975 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.151 0.849 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.074 0.926 46 H 0.110 0.890 47 H 0.074 0.926 48 H 0.109 0.891 49 H 0.094 0.906 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.760 3.090 -15.734 16.469 hybrid contribution -0.056 -0.382 0.998 1.070 sum -3.816 2.708 -14.736 15.461 Atomic orbital electron populations 1.21408 0.97610 0.97135 1.01127 1.21394 0.94901 0.98364 0.99105 1.19110 0.92859 0.91453 0.85610 0.98402 1.21224 1.31357 1.11827 0.90340 0.92367 1.24875 0.95092 0.95001 0.98850 1.69899 1.37073 1.22935 1.22893 0.86558 0.78651 0.79775 0.83150 1.19774 1.21066 1.21159 1.60692 1.47061 1.16708 1.06514 1.22050 0.94301 0.98550 0.90963 1.19644 0.89536 0.96518 0.95535 1.20643 0.94089 0.89614 0.90768 1.21759 0.97147 0.98148 1.02395 1.21409 0.92795 0.98612 0.96916 1.21783 1.00026 0.95640 1.03332 1.21154 0.92045 0.93676 0.93688 1.20671 0.95195 0.97969 1.02062 1.67231 0.99622 1.34313 1.16568 1.22015 0.96500 0.94383 1.03708 1.22743 0.90695 1.00764 0.88037 1.87878 1.70797 1.24028 1.47780 1.22571 0.95644 0.82669 1.00734 1.22274 0.96031 1.01941 0.97762 0.92586 0.94264 0.97073 0.97476 0.89728 0.93088 0.84889 0.91861 0.95373 0.85613 0.85572 0.85683 0.90384 0.90750 0.91370 0.91285 0.89339 0.92564 0.89027 0.92634 0.89129 0.90631 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.53 37.16 0.35 -2.30 16 2 C -0.10 -2.40 5.60 -26.73 -0.15 -2.55 16 3 C 0.22 5.31 2.31 -68.87 -0.16 5.15 16 4 H 0.00 -0.04 7.71 -51.93 -0.40 -0.44 16 5 C -0.51 -13.56 7.22 -34.44 -0.25 -13.81 16 6 H 0.06 1.57 7.59 -52.48 -0.40 1.17 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.07 11.33 55.43 0.63 -24.44 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.68 -13.89 5.12 -107.96 -0.55 -14.44 16 14 C 0.07 1.24 3.85 -3.82 -0.01 1.23 16 15 C -0.01 -0.16 0.45 -155.47 -0.07 -0.23 16 16 C 0.19 2.88 5.02 -82.59 -0.41 2.47 16 17 C -0.17 -2.44 9.13 -39.44 -0.36 -2.81 16 18 C -0.07 -0.91 10.18 -39.28 -0.40 -1.31 16 19 C -0.19 -2.40 9.74 -39.44 -0.38 -2.78 16 20 C 0.13 1.88 6.78 -82.59 -0.56 1.32 16 21 C -0.10 -1.14 10.17 36.01 0.37 -0.78 16 22 N -0.47 -7.49 9.02 -5.74 -0.05 -7.54 16 23 C -0.13 -1.87 4.03 -26.59 -0.11 -1.97 16 24 C 0.05 0.76 6.57 37.21 0.24 1.00 16 25 O -0.39 -5.50 10.77 -35.23 -0.38 -5.88 16 26 C 0.06 0.74 6.57 37.20 0.24 0.98 16 27 C -0.14 -1.72 4.47 -26.59 -0.12 -1.84 16 28 H 0.06 1.39 7.03 -51.92 -0.37 1.02 16 29 H 0.04 0.88 7.77 -51.93 -0.40 0.48 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.01 0.15 7.63 -51.93 -0.40 -0.24 16 32 H 0.08 2.29 6.09 -51.93 -0.32 1.97 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.33 6.97 6.29 -39.29 -0.25 6.72 16 35 H 0.06 1.12 7.64 -51.93 -0.40 0.73 16 36 H 0.03 0.50 4.86 -51.93 -0.25 0.25 16 37 H 0.13 1.55 6.83 -52.48 -0.36 1.19 16 38 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.42 6.34 -51.93 -0.33 1.09 16 45 H 0.06 0.85 6.50 -51.93 -0.34 0.52 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 47 H 0.06 0.70 6.72 -51.93 -0.35 0.35 16 48 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.08 0.82 6.88 -51.93 -0.36 0.46 16 50 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -29.33 379.38 -9.80 -39.13 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -8.27 Total: 7.87 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -1.87 Total: -16.61 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.02 Total: -46.43 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.38 Total: -5.88 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.33 -9.80 -39.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162806.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.828 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds