Wall clock time and date at job start Tue Mar 31 2020 12:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 109.47333 * 2 1 4 4 H 1.09001 * 109.47326 * 179.36524 * 3 2 1 5 5 C 1.50697 * 109.47349 * 59.36390 * 3 2 1 6 6 H 1.08003 * 120.00735 * 240.00049 * 5 3 2 7 7 C 1.37884 * 120.00145 * 60.00069 * 5 3 2 8 8 N 1.31517 * 119.99144 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00451 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47145 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47142 * 119.99977 * 9 7 5 12 12 H 1.48496 * 109.47105 * 239.99972 * 9 7 5 13 13 N 1.46903 * 109.47305 * 299.36744 * 3 2 1 14 14 C 1.46898 * 110.99747 * 273.13298 * 13 3 2 15 15 C 1.53004 * 109.47022 * 183.56726 * 14 13 3 16 16 C 1.50700 * 109.54522 * 305.02700 * 15 14 13 17 17 C 1.38228 * 119.61725 * 285.67754 * 16 15 14 18 18 C 1.38624 * 119.16095 * 179.72339 * 17 16 15 19 19 C 1.38664 * 118.42110 * 0.02562 * 18 17 16 20 20 C 1.38184 * 119.16626 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.61942 * 180.02562 * 20 19 18 22 22 N 1.31851 * 119.61802 * 105.40332 * 16 15 14 23 23 C 1.53177 * 109.61528 * 65.24985 * 15 14 13 24 24 C 1.53093 * 109.16584 * 62.93028 * 23 15 14 25 25 O 1.42900 * 109.41778 * 57.60638 * 24 23 15 26 26 C 1.42904 * 114.09765 * 298.84706 * 25 24 23 27 27 C 1.53091 * 109.41541 * 61.15542 * 26 25 24 28 28 H 1.09007 * 109.46634 * 304.76942 * 1 2 3 29 29 H 1.08994 * 109.47479 * 64.76659 * 1 2 3 30 30 H 1.09003 * 109.47048 * 184.77324 * 1 2 3 31 31 H 1.09003 * 109.46588 * 239.99667 * 2 1 3 32 32 H 1.09000 * 109.46917 * 120.00553 * 2 1 3 33 33 H 0.97004 * 119.99748 * 179.97438 * 8 7 5 34 34 H 1.00899 * 111.00312 * 149.17935 * 13 3 2 35 35 H 1.09001 * 109.47451 * 63.56977 * 14 13 3 36 36 H 1.08998 * 109.47423 * 303.56601 * 14 13 3 37 37 H 1.08007 * 120.41534 * 359.70301 * 17 16 15 38 38 H 1.08005 * 120.78741 * 180.02562 * 18 17 16 39 39 H 1.08002 * 120.42130 * 179.97438 * 19 18 17 40 40 H 1.08994 * 109.46941 * 90.00107 * 21 20 19 41 41 H 1.09000 * 109.46558 * 209.99998 * 21 20 19 42 42 H 1.08993 * 109.47098 * 329.99890 * 21 20 19 43 43 H 1.08999 * 109.52567 * 182.83237 * 23 15 14 44 44 H 1.08999 * 109.52227 * 303.02224 * 23 15 14 45 45 H 1.09006 * 109.47563 * 297.62431 * 24 23 15 46 46 H 1.08995 * 109.48330 * 177.59304 * 24 23 15 47 47 H 1.09002 * 109.48336 * 301.17087 * 26 25 24 48 48 H 1.09004 * 109.49039 * 181.14256 * 26 25 24 49 49 H 1.09000 * 109.52276 * 182.48639 * 27 26 25 50 50 H 1.09002 * 109.57379 * 62.32781 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4424 0.0114 5 6 1.5250 2.1574 1.2225 6 1 0.9052 3.0352 1.1137 7 6 1.8449 1.6910 2.4800 8 7 2.6001 0.6224 2.6124 9 14 1.2059 2.5768 3.9953 10 1 0.3842 3.7414 3.5782 11 1 0.3727 1.6460 4.7982 12 1 2.3521 3.0468 4.8141 13 7 1.5630 2.1305 -1.2070 14 6 2.4820 1.9167 -2.3328 15 6 2.0005 2.7186 -3.5437 16 6 0.5727 2.3516 -3.8561 17 6 0.2947 1.1360 -4.4527 18 6 -1.0225 0.8056 -4.7306 19 6 -2.0154 1.7142 -4.3971 20 6 -1.6615 2.9103 -3.8025 21 6 -2.7323 3.9051 -3.4352 22 7 -0.3974 3.1912 -3.5522 23 6 2.0890 4.2167 -3.2364 24 6 3.5531 4.5952 -2.9978 25 8 4.3271 4.2474 -4.1476 26 6 4.3202 2.8519 -4.4553 27 6 2.8870 2.4034 -4.7525 28 1 -0.3633 0.5861 0.8443 29 1 -0.3634 0.4381 -0.9295 30 1 -0.3633 -1.0241 0.0855 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.8255 0.2945 3.4970 34 1 1.4279 3.1151 -1.0325 35 1 2.5066 0.8567 -2.5856 36 1 3.4824 2.2468 -2.0530 37 1 1.0939 0.4526 -4.6995 38 1 -1.2696 -0.1373 -5.1959 39 1 -3.0523 1.4900 -4.5995 40 1 -3.0768 3.7097 -2.4198 41 1 -2.3254 4.9147 -3.4929 42 1 -3.5689 3.8104 -4.1273 43 1 1.6988 4.7853 -4.0805 44 1 1.5048 4.4406 -2.3439 45 1 3.9308 4.0565 -2.1288 46 1 3.6270 5.6682 -2.8209 47 1 4.7080 2.2903 -3.6053 48 1 4.9468 2.6689 -5.3282 49 1 2.8734 1.3305 -4.9441 50 1 2.5122 2.9345 -5.6274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162806.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:45 Heat of formation + Delta-G solvation = -40.065428 kcal Electronic energy + Delta-G solvation = -28817.907403 eV Core-core repulsion = 25229.657499 eV Total energy + Delta-G solvation = -3588.249904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.80780 -40.15303 -38.03688 -36.23935 -34.05068 -33.61697 -32.57568 -32.25944 -31.69947 -28.78398 -28.34707 -26.59772 -25.35333 -25.11407 -24.41062 -23.17934 -22.47329 -21.02502 -19.73177 -18.32061 -17.87183 -17.18238 -16.99533 -16.88052 -16.60411 -16.31407 -15.92137 -15.70492 -15.28742 -15.12785 -15.02042 -14.65150 -14.51408 -14.13150 -13.82502 -13.76680 -13.59690 -13.28022 -13.11414 -13.03393 -12.91481 -12.89542 -12.75743 -12.45546 -12.41428 -12.22662 -12.18105 -11.84440 -11.65379 -11.47328 -11.35987 -11.17447 -10.77806 -10.56678 -10.53812 -10.45316 -10.08253 -9.50440 -8.89784 -8.10741 -6.21911 0.36668 0.58345 1.37491 1.40623 1.50921 2.40880 2.94938 2.98205 3.17994 3.26825 3.46329 3.81271 3.89663 3.95833 4.04666 4.08410 4.18649 4.27467 4.35659 4.40610 4.45335 4.52798 4.58113 4.69551 4.70813 4.73690 4.75664 4.81046 4.84794 4.85500 4.87087 4.91533 4.93987 5.02858 5.13443 5.23898 5.26402 5.27824 5.32719 5.40131 5.43184 5.48278 5.54774 5.70499 5.80461 5.88539 6.00739 6.23694 6.27929 6.51945 6.82949 7.04287 7.33238 7.46758 8.94367 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.005200 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.230950 B = 5383.479091 C = 6581.800633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.093 4.093 3 C 0.225 3.775 4 H -0.037 1.037 5 C -0.519 4.519 6 H 0.051 0.949 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.669 5.669 14 C 0.078 3.922 15 C -0.005 4.005 16 C 0.165 3.835 17 C -0.186 4.186 18 C -0.074 4.074 19 C -0.188 4.188 20 C 0.109 3.891 21 C -0.098 4.098 22 N -0.495 5.495 23 C -0.119 4.119 24 C 0.058 3.942 25 O -0.395 6.395 26 C 0.056 3.944 27 C -0.134 4.134 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.029 0.971 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.260 0.740 34 H 0.328 0.672 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.038 0.962 46 H 0.105 0.895 47 H 0.047 0.953 48 H 0.118 0.882 49 H 0.093 0.907 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 2.469 -17.503 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.131 4.131 3 C 0.117 3.883 4 H -0.019 1.019 5 C -0.557 4.557 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.301 5.301 14 C -0.052 4.052 15 C -0.006 4.006 16 C 0.027 3.973 17 C -0.206 4.206 18 C -0.100 4.100 19 C -0.207 4.207 20 C -0.029 4.029 21 C -0.155 4.155 22 N -0.205 5.205 23 C -0.157 4.157 24 C -0.018 4.018 25 O -0.314 6.314 26 C -0.020 4.020 27 C -0.172 4.172 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.146 0.854 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.157 0.843 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.123 0.877 47 H 0.065 0.935 48 H 0.136 0.864 49 H 0.111 0.889 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.953 2.781 -17.259 18.169 hybrid contribution 0.303 -0.302 1.414 1.477 sum -4.650 2.479 -15.845 16.698 Atomic orbital electron populations 1.21218 0.96324 0.97880 1.00202 1.21253 0.95843 0.97839 0.98212 1.18878 0.90625 0.92041 0.86758 1.01922 1.21435 1.31106 1.11700 0.91471 0.93105 1.25563 0.95313 0.95653 1.01441 1.70019 1.37976 1.24035 1.23443 0.85639 0.78135 0.78779 0.79900 1.19382 1.20766 1.20765 1.60610 1.47638 1.16069 1.05741 1.22022 0.93373 0.98871 0.90945 1.19556 0.90238 0.95675 0.95119 1.20755 0.94033 0.90524 0.92014 1.22002 0.98428 0.97851 1.02317 1.21817 0.92207 0.99696 0.96289 1.22148 1.01598 0.94874 1.02119 1.21683 0.92021 0.95078 0.94089 1.20711 0.95324 0.97035 1.02462 1.67207 1.00605 1.35248 1.17455 1.21886 0.96415 0.94701 1.02693 1.22687 0.90268 1.01355 0.87527 1.87867 1.70743 1.25305 1.47490 1.22764 0.96196 0.81557 1.01530 1.22240 0.95240 1.03149 0.96584 0.94826 0.93896 0.95186 0.96336 0.92527 0.93063 0.85353 0.92142 0.96126 0.84265 0.82629 0.82860 0.90887 0.91273 0.88567 0.91221 0.91314 0.94327 0.87739 0.93483 0.86382 0.88902 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.49 9.53 71.98 0.69 -3.80 16 2 C -0.09 -4.54 5.60 30.59 0.17 -4.37 16 3 C 0.23 11.32 2.31 44.16 0.10 11.42 16 4 H -0.04 -2.07 7.71 -2.39 -0.02 -2.09 16 5 C -0.52 -28.21 7.22 25.60 0.18 -28.02 16 6 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 7 C 0.02 1.07 5.30 84.66 0.45 1.52 16 8 N -0.92 -52.52 11.33 21.45 0.24 -52.28 16 9 Si 0.95 43.90 29.54 68.60 2.03 45.92 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 N -0.67 -27.99 5.12 -495.46 -2.53 -30.53 16 14 C 0.08 2.72 3.85 86.30 0.33 3.05 16 15 C 0.00 -0.13 0.45 -52.81 -0.02 -0.16 16 16 C 0.16 4.93 5.02 42.55 0.21 5.14 16 17 C -0.19 -4.85 9.13 22.36 0.20 -4.65 16 18 C -0.07 -1.69 10.18 22.46 0.23 -1.46 16 19 C -0.19 -4.31 9.74 22.36 0.22 -4.09 16 20 C 0.11 2.95 6.78 42.54 0.29 3.24 16 21 C -0.10 -2.08 10.17 71.24 0.72 -1.36 16 22 N -0.50 -15.62 9.02 -172.08 -1.55 -17.18 16 23 C -0.12 -3.49 4.03 30.68 0.12 -3.37 16 24 C 0.06 1.64 6.57 72.01 0.47 2.11 16 25 O -0.39 -10.94 10.77 -148.98 -1.60 -12.54 16 26 C 0.06 1.29 6.57 72.01 0.47 1.76 16 27 C -0.13 -3.05 4.47 30.68 0.14 -2.91 16 28 H 0.03 1.65 7.03 -2.38 -0.02 1.63 16 29 H 0.04 1.89 7.77 -2.39 -0.02 1.87 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.02 0.83 7.63 -2.39 -0.02 0.81 16 32 H 0.06 3.11 6.09 -2.39 -0.01 3.10 16 33 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.33 14.23 6.29 -89.69 -0.56 13.66 16 35 H 0.06 2.13 7.64 -2.39 -0.02 2.11 16 36 H 0.02 0.76 4.86 -2.39 -0.01 0.75 16 37 H 0.14 3.11 6.83 -2.91 -0.02 3.09 16 38 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 39 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.10 1.44 8.08 -2.39 -0.02 1.42 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.07 2.28 6.34 -2.39 -0.02 2.27 16 45 H 0.04 1.22 6.50 -2.38 -0.02 1.20 16 46 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.05 1.17 6.72 -2.39 -0.02 1.15 16 48 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.09 1.80 6.88 -2.39 -0.02 1.78 16 50 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -63.59 379.38 1.93 -61.66 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.36 Total: 30.88 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 4.99 Total: -25.95 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -3.84 Total: -99.98 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -1.60 Total: -12.54 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -63.59 1.93 -61.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162806.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.595 kcal (2) G-P(sol) polarization free energy of solvation -63.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds