Wall clock time and date at job start Tue Mar 31 2020 11:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47258 * 2 1 4 4 H 1.08997 * 109.46838 * 54.99599 * 3 2 1 5 5 C 1.50693 * 109.46918 * 175.00105 * 3 2 1 6 6 H 1.08004 * 120.00224 * 120.00091 * 5 3 2 7 7 C 1.37884 * 120.00020 * 299.99543 * 5 3 2 8 8 N 1.31516 * 119.99674 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99970 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47224 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.46923 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47046 * 299.99667 * 9 7 5 13 13 N 1.46901 * 109.46851 * 294.99733 * 3 2 1 14 14 C 1.50426 * 110.90481 * 294.15515 * 13 3 2 15 15 C 1.55915 * 106.08046 * 213.50196 * 14 13 3 16 16 C 1.50355 * 103.04633 * 355.01658 * 15 14 13 17 17 H 1.09000 * 108.48798 * 280.95635 * 16 15 14 18 18 C 1.45220 * 111.00145 * 179.97438 * 13 3 2 19 19 H 1.09005 * 111.40599 * 48.46387 * 18 13 3 20 20 C 1.52013 * 122.99290 * 272.87964 * 18 13 3 21 21 C 1.56200 * 100.95498 * 209.49262 * 20 18 13 22 22 N 1.43328 * 127.57421 * 148.13957 * 16 15 14 23 23 C 1.46904 * 110.99720 * 88.55390 * 22 16 15 24 24 C 1.50706 * 109.46957 * 190.00069 * 23 22 16 25 25 C 1.34512 * 125.78980 * 89.71252 * 24 23 22 26 26 C 1.41382 * 106.83964 * 179.88525 * 25 24 23 27 27 C 1.34516 * 106.84035 * 0.37429 * 26 25 24 28 28 C 1.50697 * 125.78734 * 179.78537 * 27 26 25 29 29 O 1.34302 * 108.42155 * 359.77161 * 27 26 25 30 30 H 1.08997 * 109.46854 * 60.00416 * 1 2 3 31 31 H 1.08995 * 109.47159 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46839 * 300.00466 * 1 2 3 33 33 H 1.08996 * 109.47201 * 239.99397 * 2 1 3 34 34 H 1.09003 * 109.46837 * 120.00008 * 2 1 3 35 35 H 0.97004 * 119.99526 * 180.02562 * 8 7 5 36 36 H 1.09002 * 110.13158 * 94.39471 * 14 13 3 37 37 H 1.08996 * 110.24853 * 332.68246 * 14 13 3 38 38 H 1.09002 * 110.73433 * 236.57697 * 15 14 13 39 39 H 1.09001 * 110.72537 * 113.45324 * 15 14 13 40 40 H 1.08994 * 111.12698 * 91.57383 * 20 18 13 41 41 H 1.08995 * 111.12032 * 327.41122 * 20 18 13 42 42 H 1.09000 * 110.06151 * 264.33732 * 21 20 18 43 43 H 1.08996 * 110.11071 * 142.85169 * 21 20 18 44 44 H 1.09005 * 109.46847 * 309.99603 * 23 22 16 45 45 H 1.08993 * 109.47311 * 69.99893 * 23 22 16 46 46 H 1.08004 * 126.57953 * 0.02618 * 25 24 23 47 47 H 1.08003 * 126.57863 * 180.12120 * 26 25 24 48 48 H 1.08999 * 109.46779 * 179.97438 * 28 27 26 49 49 H 1.08999 * 109.47537 * 300.00065 * 28 27 26 50 50 H 1.08997 * 109.46825 * 60.00233 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8811 1.3818 10 1 6.4996 2.2813 1.3821 11 1 6.3977 0.2177 2.6510 12 1 6.5975 0.1470 0.2350 13 7 1.6515 2.0992 -1.2553 14 6 2.3481 1.4676 -2.4295 15 6 2.5998 2.6175 -3.4519 16 6 1.9067 3.7921 -2.8191 17 1 0.8367 3.7048 -3.0079 18 6 2.1195 3.4735 -1.2902 19 1 3.1708 3.5430 -1.0110 20 6 1.3239 4.6337 -0.7142 21 6 1.7956 5.8035 -1.6356 22 7 2.2731 5.1749 -2.9079 23 6 1.6485 5.8111 -4.0755 24 6 2.2420 7.1814 -4.2784 25 6 3.3239 7.4674 -5.0248 26 6 3.5241 8.8642 -4.9375 27 6 2.5575 9.3471 -4.1363 28 6 2.3736 10.7919 -3.7494 29 8 1.7839 8.3233 -3.7401 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.8293 -0.0611 2.9499 36 1 1.7127 0.7025 -2.8754 37 1 3.2963 1.0312 -2.1155 38 1 2.1531 2.3801 -4.4174 39 1 3.6671 2.8113 -3.5594 40 1 1.5953 4.8185 0.3251 41 1 0.2521 4.4629 -0.8140 42 1 2.6104 6.3491 -1.1597 43 1 0.9641 6.4778 -1.8404 44 1 1.8294 5.2020 -4.9612 45 1 0.5751 5.9010 -3.9094 46 1 3.9232 6.7651 -5.5852 47 1 4.3058 9.4337 -5.4182 48 1 1.5090 10.8848 -3.0921 49 1 3.2646 11.1453 -3.2304 50 1 2.2139 11.3907 -4.6460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:53 Heat of formation + Delta-G solvation = 27.782417 kcal Electronic energy + Delta-G solvation = -27890.762483 eV Core-core repulsion = 24305.454682 eV Total energy + Delta-G solvation = -3585.307801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.49501 -41.56028 -38.26621 -35.45092 -34.08987 -33.78305 -33.41440 -32.30038 -30.82733 -28.53047 -27.97064 -27.48924 -24.97417 -24.76588 -23.04978 -22.66536 -21.82825 -21.26073 -20.95984 -20.13247 -18.32141 -17.86555 -17.41203 -17.05911 -16.73545 -16.11616 -15.73678 -15.70165 -15.27263 -15.06262 -14.77469 -14.45929 -14.18567 -13.99891 -13.81330 -13.71064 -13.69543 -13.49230 -13.44381 -13.18777 -13.11949 -12.91072 -12.80344 -12.65850 -12.44876 -12.21977 -12.08552 -11.95400 -11.83710 -11.62183 -11.59330 -11.40176 -11.10675 -10.80737 -10.72188 -10.42136 -9.45661 -9.16152 -9.04521 -8.04555 -6.24167 0.75746 1.36961 1.38166 1.44929 1.69223 2.01082 2.39679 2.66815 3.15398 3.41834 3.55873 3.65270 3.89591 4.03586 4.09682 4.18074 4.22529 4.24210 4.35063 4.42370 4.49620 4.57135 4.59406 4.62013 4.72944 4.74036 4.74505 4.77540 4.89868 4.91160 4.94028 4.94412 5.04681 5.10579 5.13955 5.19276 5.29175 5.32517 5.32913 5.36351 5.46175 5.46920 5.63239 5.67753 5.76098 5.78855 5.99354 6.12397 6.21320 6.28722 6.42132 6.49427 6.96598 7.45156 8.91980 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.003349 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.847522 B = 8357.872221 C = 9018.393489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.214 3.786 4 H 0.000 1.000 5 C -0.546 4.546 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 0.941 3.059 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.494 5.494 14 C 0.038 3.962 15 C -0.095 4.095 16 C 0.068 3.932 17 H 0.047 0.953 18 C 0.052 3.948 19 H 0.037 0.963 20 C -0.115 4.115 21 C 0.060 3.940 22 N -0.513 5.513 23 C 0.134 3.866 24 C -0.021 4.021 25 C -0.199 4.199 26 C -0.227 4.227 27 C -0.026 4.026 28 C -0.072 4.072 29 O -0.193 6.193 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.061 0.939 35 H 0.261 0.739 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.119 0.881 45 H 0.059 0.941 46 H 0.155 0.845 47 H 0.165 0.835 48 H 0.077 0.923 49 H 0.097 0.903 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 15.262 -14.501 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.106 3.894 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.217 5.217 14 C -0.090 4.090 15 C -0.134 4.134 16 C -0.042 4.042 17 H 0.065 0.935 18 C -0.059 4.059 19 H 0.055 0.945 20 C -0.153 4.153 21 C -0.067 4.067 22 N -0.238 5.238 23 C 0.007 3.993 24 C -0.071 4.071 25 C -0.219 4.219 26 C -0.246 4.246 27 C -0.076 4.076 28 C -0.128 4.128 29 O -0.090 6.090 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.137 0.863 45 H 0.077 0.923 46 H 0.173 0.827 47 H 0.183 0.817 48 H 0.096 0.904 49 H 0.115 0.885 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.234 15.192 -14.218 21.234 hybrid contribution 1.464 -0.403 0.853 1.742 sum -2.770 14.789 -13.366 20.126 Atomic orbital electron populations 1.21568 0.96353 0.99807 1.00562 1.21403 0.94435 0.98104 1.00377 1.19118 0.91836 0.91594 0.86856 0.98241 1.21890 0.93946 1.37457 1.05251 0.93054 1.25557 1.01463 0.95017 0.95607 1.69995 1.36207 1.38975 1.09772 0.85873 0.81870 0.78045 0.77442 1.20445 1.20887 1.19698 1.65194 1.51523 1.01101 1.03880 1.23640 0.98025 0.96873 0.90509 1.21639 1.00654 0.92512 0.98569 1.21795 0.98126 0.88027 0.96268 0.93539 1.22746 0.97152 0.90388 0.95568 0.94496 1.22181 1.00062 0.94176 0.98923 1.23509 0.98934 0.95576 0.88728 1.62847 1.56866 1.01956 1.02087 1.20728 0.96204 0.86924 0.95482 1.22333 0.98307 0.86732 0.99734 1.21797 0.98782 0.96741 1.04610 1.21857 1.02849 0.94798 1.05116 1.23172 0.93090 0.91291 1.00089 1.20459 1.04475 0.84142 1.03696 1.83940 1.49894 1.15729 1.59462 0.92409 0.93506 0.95096 0.94927 0.92055 0.92988 0.90444 0.93684 0.88773 0.91861 0.92171 0.90527 0.91249 0.91266 0.86332 0.92281 0.82748 0.81745 0.90413 0.88457 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.80 71.98 0.71 -4.31 16 2 C -0.10 -4.97 5.20 30.60 0.16 -4.81 16 3 C 0.21 10.62 1.82 44.17 0.08 10.70 16 4 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 5 C -0.55 -29.42 6.44 25.60 0.16 -29.25 16 6 H 0.05 2.79 5.71 -2.91 -0.02 2.78 16 7 C 0.02 1.29 5.29 84.66 0.45 1.74 16 8 N -0.91 -52.12 11.29 21.45 0.24 -51.87 16 9 Si 0.94 43.94 29.54 68.60 2.03 45.96 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.49 -20.50 4.76 -831.05 -3.96 -24.46 16 14 C 0.04 1.39 5.25 86.62 0.45 1.85 16 15 C -0.10 -2.87 6.84 30.75 0.21 -2.66 16 16 C 0.07 2.11 2.38 46.36 0.11 2.22 16 17 H 0.05 1.43 7.81 -2.39 -0.02 1.41 16 18 C 0.05 2.04 2.40 46.54 0.11 2.15 16 19 H 0.04 1.73 6.31 -2.38 -0.02 1.72 16 20 C -0.11 -3.93 6.79 31.38 0.21 -3.72 16 21 C 0.06 1.77 6.50 86.86 0.56 2.34 16 22 N -0.51 -14.96 5.18 -865.04 -4.48 -19.44 16 23 C 0.13 3.16 5.12 85.56 0.44 3.60 16 24 C -0.02 -0.53 6.42 24.83 0.16 -0.38 16 25 C -0.20 -4.72 10.81 22.19 0.24 -4.48 16 26 C -0.23 -4.80 10.81 22.19 0.24 -4.56 16 27 C -0.03 -0.56 7.32 24.83 0.18 -0.38 16 28 C -0.07 -0.87 10.42 71.23 0.74 -0.13 16 29 O -0.19 -4.96 10.65 -2.49 -0.03 -4.99 16 30 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.03 1.50 7.19 -2.39 -0.02 1.48 16 34 H 0.06 3.31 5.95 -2.39 -0.01 3.29 16 35 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 36 H 0.08 2.64 8.10 -2.39 -0.02 2.62 16 37 H 0.04 1.93 5.90 -2.39 -0.01 1.92 16 38 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.07 1.84 7.48 -2.39 -0.02 1.82 16 44 H 0.12 2.38 8.07 -2.38 -0.02 2.36 16 45 H 0.06 1.32 7.84 -2.39 -0.02 1.30 16 46 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 47 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -62.39 384.45 -0.07 -62.46 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.90 Total: 22.42 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 5.22 Total: -30.08 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -8.20 Total: -95.78 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.03 Total: -4.99 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -62.39 -0.07 -62.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.243 kcal (2) G-P(sol) polarization free energy of solvation -62.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds