Wall clock time and date at job start Tue Mar 31 2020 11:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47008 * 2 1 4 4 H 1.08998 * 109.46692 * 174.47883 * 3 2 1 5 5 C 1.50696 * 109.47453 * 54.47599 * 3 2 1 6 6 H 1.07995 * 120.00334 * 239.99699 * 5 3 2 7 7 C 1.37877 * 119.99480 * 60.00046 * 5 3 2 8 8 N 1.31516 * 120.00511 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99727 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47107 * 179.97438 * 9 7 5 11 11 H 1.48495 * 109.47015 * 300.00116 * 9 7 5 12 12 H 1.48502 * 109.46941 * 60.00155 * 9 7 5 13 13 N 1.46901 * 109.46983 * 294.47703 * 3 2 1 14 14 C 1.50099 * 111.00181 * 79.83454 * 13 3 2 15 15 C 1.55860 * 106.31040 * 214.17151 * 14 13 3 16 16 C 1.50904 * 103.03689 * 354.28245 * 15 14 13 17 17 H 1.09004 * 110.00593 * 277.34708 * 16 15 14 18 18 C 1.44645 * 110.99802 * 325.89445 * 13 3 2 19 19 H 1.08998 * 109.99429 * 50.52430 * 18 13 3 20 20 C 1.50890 * 125.24432 * 276.71595 * 18 13 3 21 21 C 1.55855 * 103.03781 * 216.44272 * 20 18 13 22 22 N 1.44648 * 125.20941 * 143.52449 * 16 15 14 23 23 C 1.46892 * 111.00122 * 83.30795 * 22 16 15 24 24 C 1.50698 * 109.47325 * 170.00154 * 23 22 16 25 25 C 1.34515 * 125.79055 * 89.71987 * 24 23 22 26 26 C 1.41376 * 106.84208 * 179.89052 * 25 24 23 27 27 C 1.34509 * 106.84463 * 0.37211 * 26 25 24 28 28 C 1.50699 * 125.79390 * 179.79210 * 27 26 25 29 29 O 1.34305 * 125.79101 * 270.02711 * 24 23 22 30 30 H 1.08998 * 109.46754 * 309.52490 * 1 2 3 31 31 H 1.08998 * 109.46870 * 69.52074 * 1 2 3 32 32 H 1.08995 * 109.47202 * 189.52518 * 1 2 3 33 33 H 1.08993 * 109.46871 * 239.99584 * 2 1 3 34 34 H 1.09004 * 109.46927 * 119.99553 * 2 1 3 35 35 H 0.97002 * 119.99711 * 179.97438 * 8 7 5 36 36 H 1.09005 * 110.08516 * 333.38301 * 14 13 3 37 37 H 1.09004 * 110.08813 * 94.95814 * 14 13 3 38 38 H 1.08999 * 110.70048 * 112.66875 * 15 14 13 39 39 H 1.08997 * 110.69811 * 235.72262 * 15 14 13 40 40 H 1.08998 * 110.70691 * 334.83478 * 20 18 13 41 41 H 1.09005 * 110.69661 * 97.88132 * 20 18 13 42 42 H 1.09008 * 110.08770 * 124.93656 * 21 20 18 43 43 H 1.09003 * 110.09167 * 246.44781 * 21 20 18 44 44 H 1.08998 * 109.47526 * 290.00440 * 23 22 16 45 45 H 1.09005 * 109.46983 * 50.00484 * 23 22 16 46 46 H 1.08007 * 126.57438 * 0.02562 * 25 24 23 47 47 H 1.08001 * 126.57810 * 180.11884 * 26 25 24 48 48 H 1.09002 * 109.46979 * 179.97438 * 28 27 26 49 49 H 1.09001 * 109.47192 * 299.99917 * 28 27 26 50 50 H 1.09003 * 109.46956 * 59.99819 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1255 1.4441 0.0989 5 6 1.4292 2.1914 1.1563 6 1 0.8212 3.0649 0.9732 7 6 1.6467 1.7612 2.4481 8 7 2.3875 0.6977 2.6712 9 14 0.8901 2.6898 3.8816 10 1 1.2714 2.0294 5.1558 11 1 1.3856 4.0896 3.8813 12 1 -0.5889 2.6882 3.7470 13 7 1.6622 2.0954 -1.2605 14 6 0.2304 2.5445 -1.2257 15 6 -0.3152 2.3805 -2.6764 16 6 0.9118 1.9804 -3.4584 17 1 1.4873 2.8659 -3.7282 18 6 1.6817 1.1537 -2.3582 19 1 1.1107 0.2632 -2.0954 20 6 2.9084 0.7531 -3.1402 21 6 2.3625 0.5887 -4.5907 22 7 0.9309 1.0383 -4.5558 23 6 0.5531 1.6908 -5.8164 24 6 0.8185 0.7538 -6.9665 25 6 -0.0510 -0.1412 -7.4688 26 6 0.6078 -0.8001 -8.5321 27 6 1.8433 -0.2742 -8.6107 28 6 2.9096 -0.6726 -9.5982 29 8 1.9654 0.6666 -7.6599 30 1 -0.3633 0.6540 0.7927 31 1 -0.3633 0.3595 -0.9627 32 1 -0.3633 -1.0134 0.1701 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 2.5408 0.3954 3.5801 36 1 -0.3409 1.9208 -0.5381 37 1 0.1730 3.5892 -0.9200 38 1 -1.0710 1.5961 -2.7174 39 1 -0.7197 3.3232 -3.0448 40 1 3.6644 1.5372 -3.0995 41 1 3.3118 -0.1888 -2.7683 42 1 2.9340 1.2120 -5.2787 43 1 2.4206 -0.4559 -4.8966 44 1 -0.5068 1.9439 -5.7912 45 1 1.1407 2.5998 -5.9454 46 1 -1.0598 -0.3203 -7.1270 47 1 0.1990 -1.5793 -9.1583 48 1 3.8060 -0.0772 -9.4250 49 1 3.1450 -1.7294 -9.4722 50 1 2.5489 -0.4992 -10.6121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:57 Heat of formation + Delta-G solvation = 65.646867 kcal Electronic energy + Delta-G solvation = -28180.733340 eV Core-core repulsion = 24597.067466 eV Total energy + Delta-G solvation = -3583.665875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.67353 -40.43873 -37.08844 -33.73457 -33.25967 -32.66634 -31.65341 -30.89873 -29.31263 -27.43950 -26.80800 -25.64792 -24.03320 -23.61726 -21.94837 -21.05864 -20.58424 -20.16781 -19.68340 -18.50724 -16.56784 -16.47675 -16.11609 -15.86165 -15.19855 -14.91820 -14.64976 -14.38630 -14.05374 -13.87401 -13.42617 -13.27445 -13.20365 -12.96585 -12.87451 -12.60814 -12.44741 -12.16529 -12.07097 -11.87005 -11.62569 -11.30204 -11.17896 -10.98520 -10.86751 -10.75960 -10.60645 -10.34665 -10.12747 -10.00083 -9.96764 -9.91916 -9.45630 -9.36193 -8.78472 -8.53136 -8.39156 -8.23882 -7.11378 -6.01127 -4.04748 1.59964 2.52949 2.78781 3.30701 3.35931 3.38315 3.92396 4.40991 4.46545 4.61726 4.75190 4.97213 4.97720 5.11672 5.18137 5.22301 5.28633 5.30383 5.38464 5.42021 5.48140 5.55657 5.61853 5.73735 5.81593 5.90641 5.92759 5.98876 6.05120 6.07847 6.28780 6.32538 6.37274 6.41355 6.45524 6.48716 6.58622 6.66820 6.80905 6.81475 6.85401 6.96623 7.11651 7.19631 7.28617 7.43134 7.58491 7.71788 7.78414 8.01670 8.39273 8.58705 8.99431 9.59058 11.05278 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.031836 B = 0.002913 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.296096 B = 9608.677618 C = 9869.808967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.146 4.146 3 C 0.203 3.797 4 H 0.041 0.959 5 C -0.508 4.508 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.278 1.278 13 N -0.494 5.494 14 C 0.033 3.967 15 C -0.113 4.113 16 C 0.040 3.960 17 H 0.051 0.949 18 C 0.051 3.949 19 H 0.072 0.928 20 C -0.111 4.111 21 C 0.043 3.957 22 N -0.491 5.491 23 C 0.124 3.876 24 C -0.006 4.006 25 C -0.190 4.190 26 C -0.213 4.213 27 C -0.019 4.019 28 C -0.072 4.072 29 O -0.175 6.175 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.090 0.910 35 H 0.260 0.740 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.051 0.949 46 H 0.147 0.853 47 H 0.145 0.855 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 -1.914 -20.660 20.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.185 4.185 3 C 0.097 3.903 4 H 0.059 0.941 5 C -0.546 4.546 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.203 1.203 13 N -0.218 5.218 14 C -0.094 4.094 15 C -0.151 4.151 16 C -0.070 4.070 17 H 0.069 0.931 18 C -0.059 4.059 19 H 0.089 0.911 20 C -0.149 4.149 21 C -0.084 4.084 22 N -0.215 5.215 23 C -0.003 4.003 24 C -0.056 4.056 25 C -0.210 4.210 26 C -0.233 4.233 27 C -0.070 4.070 28 C -0.129 4.129 29 O -0.072 6.072 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.069 0.931 46 H 0.165 0.835 47 H 0.163 0.837 48 H 0.093 0.907 49 H 0.102 0.898 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.286 -1.834 -20.433 20.642 hybrid contribution -0.532 0.238 0.784 0.977 sum -2.818 -1.595 -19.649 19.914 Atomic orbital electron populations 1.21997 0.98108 0.99077 1.00743 1.22105 0.94758 1.01085 1.00568 1.19480 0.96521 0.89153 0.85183 0.94117 1.21147 1.31311 1.11921 0.90250 0.91916 1.24895 0.95244 0.95001 0.98683 1.69881 1.38438 1.23772 1.20684 0.86680 0.79590 0.80105 0.81767 1.21422 1.20280 1.20332 1.64931 1.19295 1.32938 1.04652 1.23895 0.90207 1.01569 0.93736 1.21901 0.96419 1.00458 0.96355 1.22568 0.98526 0.94570 0.91321 0.93062 1.22570 0.95674 0.96192 0.91476 0.91056 1.21779 0.97987 1.01847 0.93291 1.23614 0.87081 1.00822 0.96912 1.64736 1.21617 1.33704 1.01420 1.20783 1.02297 0.92308 0.84955 1.22225 0.84374 1.02052 0.96949 1.21531 1.01606 0.98893 0.98994 1.21536 0.94625 1.04807 1.02297 1.22393 0.97714 0.93064 0.93797 1.20280 0.95373 1.02111 0.95130 1.83972 1.36401 1.48648 1.38195 0.91107 0.94074 0.95989 0.95757 0.89159 0.92968 0.89671 0.91566 0.91393 0.92101 0.91007 0.91176 0.93314 0.90628 0.87700 0.93086 0.83490 0.83727 0.90703 0.89772 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 7.88 37.16 0.29 -2.74 16 2 C -0.15 -3.39 4.88 -26.73 -0.13 -3.52 16 3 C 0.20 4.95 2.82 -68.86 -0.19 4.76 16 4 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 5 C -0.51 -13.23 6.13 -34.44 -0.21 -13.44 16 6 H 0.06 1.62 6.24 -52.49 -0.33 1.30 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.70 11.38 55.43 0.63 -24.07 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.49 -10.43 5.49 -215.39 -1.18 -11.61 16 14 C 0.03 0.64 4.40 -0.50 0.00 0.64 16 15 C -0.11 -1.77 6.53 -26.26 -0.17 -1.94 16 16 C 0.04 0.63 2.40 -67.41 -0.16 0.47 16 17 H 0.05 0.86 7.91 -51.93 -0.41 0.45 16 18 C 0.05 0.95 1.45 -67.42 -0.10 0.85 16 19 H 0.07 1.43 4.22 -51.93 -0.22 1.21 16 20 C -0.11 -1.82 6.80 -26.27 -0.18 -2.00 16 21 C 0.04 0.63 5.72 -0.51 0.00 0.63 16 22 N -0.49 -7.17 5.39 -223.35 -1.20 -8.38 16 23 C 0.12 1.55 5.47 -4.98 -0.03 1.52 16 24 C -0.01 -0.08 5.84 -35.63 -0.21 -0.28 16 25 C -0.19 -2.28 10.81 -39.70 -0.43 -2.71 16 26 C -0.21 -2.32 10.81 -39.71 -0.43 -2.75 16 27 C -0.02 -0.21 7.32 -35.63 -0.26 -0.47 16 28 C -0.07 -0.50 10.42 36.00 0.38 -0.12 16 29 O -0.18 -2.28 10.22 5.69 0.06 -2.23 16 30 H 0.07 1.63 6.12 -51.93 -0.32 1.31 16 31 H 0.04 0.81 4.24 -51.93 -0.22 0.59 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.53 5.86 -51.93 -0.30 0.23 16 34 H 0.09 2.36 6.24 -51.93 -0.32 2.04 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.09 1.74 3.60 -51.93 -0.19 1.55 16 37 H 0.07 1.28 7.67 -51.93 -0.40 0.88 16 38 H 0.07 1.04 7.83 -51.93 -0.41 0.64 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.14 8.07 -51.93 -0.42 0.73 16 42 H 0.05 0.69 7.46 -51.92 -0.39 0.30 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 46 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 47 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -28.20 369.38 -11.20 -39.40 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.12 Total: 4.97 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -1.93 Total: -19.50 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -1.76 Total: -44.05 kcal Atomic # 8 Polarization: -2.28 SS G_CDS: 0.06 Total: -2.23 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.20 -11.20 -39.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.050 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds