Wall clock time and date at job start Tue Mar 31 2020 11:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47008 * 2 1 4 4 H 1.08998 * 109.46692 * 174.47883 * 3 2 1 5 5 C 1.50696 * 109.47453 * 54.47599 * 3 2 1 6 6 H 1.07995 * 120.00334 * 239.99699 * 5 3 2 7 7 C 1.37877 * 119.99480 * 60.00046 * 5 3 2 8 8 N 1.31516 * 120.00511 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99727 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47107 * 179.97438 * 9 7 5 11 11 H 1.48495 * 109.47015 * 300.00116 * 9 7 5 12 12 H 1.48502 * 109.46941 * 60.00155 * 9 7 5 13 13 N 1.46901 * 109.46983 * 294.47703 * 3 2 1 14 14 C 1.50099 * 111.00181 * 79.83454 * 13 3 2 15 15 C 1.55860 * 106.31040 * 214.17151 * 14 13 3 16 16 C 1.50904 * 103.03689 * 354.28245 * 15 14 13 17 17 H 1.09004 * 110.00593 * 277.34708 * 16 15 14 18 18 C 1.44645 * 110.99802 * 325.89445 * 13 3 2 19 19 H 1.08998 * 109.99429 * 50.52430 * 18 13 3 20 20 C 1.50890 * 125.24432 * 276.71595 * 18 13 3 21 21 C 1.55855 * 103.03781 * 216.44272 * 20 18 13 22 22 N 1.44648 * 125.20941 * 143.52449 * 16 15 14 23 23 C 1.46892 * 111.00122 * 83.30795 * 22 16 15 24 24 C 1.50698 * 109.47325 * 170.00154 * 23 22 16 25 25 C 1.34515 * 125.79055 * 89.71987 * 24 23 22 26 26 C 1.41376 * 106.84208 * 179.89052 * 25 24 23 27 27 C 1.34509 * 106.84463 * 0.37211 * 26 25 24 28 28 C 1.50699 * 125.79390 * 179.79210 * 27 26 25 29 29 O 1.34305 * 125.79101 * 270.02711 * 24 23 22 30 30 H 1.08998 * 109.46754 * 309.52490 * 1 2 3 31 31 H 1.08998 * 109.46870 * 69.52074 * 1 2 3 32 32 H 1.08995 * 109.47202 * 189.52518 * 1 2 3 33 33 H 1.08993 * 109.46871 * 239.99584 * 2 1 3 34 34 H 1.09004 * 109.46927 * 119.99553 * 2 1 3 35 35 H 0.97002 * 119.99711 * 179.97438 * 8 7 5 36 36 H 1.09005 * 110.08516 * 333.38301 * 14 13 3 37 37 H 1.09004 * 110.08813 * 94.95814 * 14 13 3 38 38 H 1.08999 * 110.70048 * 112.66875 * 15 14 13 39 39 H 1.08997 * 110.69811 * 235.72262 * 15 14 13 40 40 H 1.08998 * 110.70691 * 334.83478 * 20 18 13 41 41 H 1.09005 * 110.69661 * 97.88132 * 20 18 13 42 42 H 1.09008 * 110.08770 * 124.93656 * 21 20 18 43 43 H 1.09003 * 110.09167 * 246.44781 * 21 20 18 44 44 H 1.08998 * 109.47526 * 290.00440 * 23 22 16 45 45 H 1.09005 * 109.46983 * 50.00484 * 23 22 16 46 46 H 1.08007 * 126.57438 * 0.02562 * 25 24 23 47 47 H 1.08001 * 126.57810 * 180.11884 * 26 25 24 48 48 H 1.09002 * 109.46979 * 179.97438 * 28 27 26 49 49 H 1.09001 * 109.47192 * 299.99917 * 28 27 26 50 50 H 1.09003 * 109.46956 * 59.99819 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1255 1.4441 0.0989 5 6 1.4292 2.1914 1.1563 6 1 0.8212 3.0649 0.9732 7 6 1.6467 1.7612 2.4481 8 7 2.3875 0.6977 2.6712 9 14 0.8901 2.6898 3.8816 10 1 1.2714 2.0294 5.1558 11 1 1.3856 4.0896 3.8813 12 1 -0.5889 2.6882 3.7470 13 7 1.6622 2.0954 -1.2605 14 6 0.2304 2.5445 -1.2257 15 6 -0.3152 2.3805 -2.6764 16 6 0.9118 1.9804 -3.4584 17 1 1.4873 2.8659 -3.7282 18 6 1.6817 1.1537 -2.3582 19 1 1.1107 0.2632 -2.0954 20 6 2.9084 0.7531 -3.1402 21 6 2.3625 0.5887 -4.5907 22 7 0.9309 1.0383 -4.5558 23 6 0.5531 1.6908 -5.8164 24 6 0.8185 0.7538 -6.9665 25 6 -0.0510 -0.1412 -7.4688 26 6 0.6078 -0.8001 -8.5321 27 6 1.8433 -0.2742 -8.6107 28 6 2.9096 -0.6726 -9.5982 29 8 1.9654 0.6666 -7.6599 30 1 -0.3633 0.6540 0.7927 31 1 -0.3633 0.3595 -0.9627 32 1 -0.3633 -1.0134 0.1701 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 2.5408 0.3954 3.5801 36 1 -0.3409 1.9208 -0.5381 37 1 0.1730 3.5892 -0.9200 38 1 -1.0710 1.5961 -2.7174 39 1 -0.7197 3.3232 -3.0448 40 1 3.6644 1.5372 -3.0995 41 1 3.3118 -0.1888 -2.7683 42 1 2.9340 1.2120 -5.2787 43 1 2.4206 -0.4559 -4.8966 44 1 -0.5068 1.9439 -5.7912 45 1 1.1407 2.5998 -5.9454 46 1 -1.0598 -0.3203 -7.1270 47 1 0.1990 -1.5793 -9.1583 48 1 3.8060 -0.0772 -9.4250 49 1 3.1450 -1.7294 -9.4722 50 1 2.5489 -0.4992 -10.6121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:56 Heat of formation + Delta-G solvation = 48.178866 kcal Electronic energy + Delta-G solvation = -28181.490810 eV Core-core repulsion = 24597.067466 eV Total energy + Delta-G solvation = -3584.423344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.53178 -41.87338 -38.56536 -35.36071 -34.10455 -33.77092 -33.33588 -32.10454 -30.83044 -28.65016 -28.26946 -27.24755 -25.41273 -24.95971 -22.91894 -22.33550 -22.20002 -21.15757 -21.00871 -20.07460 -17.88815 -17.75278 -17.43693 -17.16699 -16.86056 -16.15372 -15.99342 -15.84594 -15.34188 -15.09695 -14.89244 -14.55180 -14.15151 -13.92824 -13.83599 -13.70856 -13.67379 -13.65615 -13.34221 -13.04906 -12.83025 -12.78994 -12.68244 -12.66417 -12.50344 -12.32274 -12.14200 -11.98265 -11.83286 -11.67847 -11.55406 -11.20370 -10.90248 -10.77646 -10.72498 -10.44213 -9.62399 -9.15775 -8.81003 -8.06204 -6.15875 0.74202 1.43605 1.44480 1.51299 1.68887 1.98652 2.44337 2.68438 3.22982 3.35288 3.55663 3.63495 3.93545 4.03899 4.08537 4.17733 4.20101 4.23773 4.29345 4.42134 4.49921 4.53478 4.56838 4.59895 4.64173 4.72074 4.73939 4.75002 4.77934 4.89467 4.91074 4.93600 4.99848 5.09525 5.13851 5.16377 5.22804 5.27081 5.31565 5.32975 5.47281 5.60198 5.64921 5.69059 5.70366 5.72923 5.90561 6.00149 6.11495 6.27309 6.47270 6.77803 6.96511 7.51700 8.99184 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.031836 B = 0.002913 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.296096 B = 9608.677618 C = 9869.808967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.136 4.136 3 C 0.211 3.789 4 H -0.004 1.004 5 C -0.512 4.512 6 H 0.062 0.938 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 0.949 3.051 10 H -0.289 1.289 11 H -0.275 1.275 12 H -0.268 1.268 13 N -0.506 5.506 14 C 0.031 3.969 15 C -0.101 4.101 16 C 0.058 3.942 17 H 0.046 0.954 18 C 0.041 3.959 19 H 0.058 0.942 20 C -0.111 4.111 21 C 0.057 3.943 22 N -0.494 5.494 23 C 0.127 3.873 24 C -0.028 4.028 25 C -0.195 4.195 26 C -0.226 4.226 27 C -0.025 4.025 28 C -0.073 4.073 29 O -0.193 6.193 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.057 0.943 35 H 0.259 0.741 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.122 0.878 45 H 0.053 0.947 46 H 0.157 0.843 47 H 0.166 0.834 48 H 0.076 0.924 49 H 0.098 0.902 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.107 -1.713 -22.792 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.175 4.175 3 C 0.103 3.897 4 H 0.014 0.986 5 C -0.551 4.551 6 H 0.080 0.920 7 C -0.181 4.181 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.215 1.215 11 H -0.201 1.201 12 H -0.193 1.193 13 N -0.230 5.230 14 C -0.096 4.096 15 C -0.139 4.139 16 C -0.052 4.052 17 H 0.064 0.936 18 C -0.069 4.069 19 H 0.075 0.925 20 C -0.150 4.150 21 C -0.071 4.071 22 N -0.218 5.218 23 C 0.000 4.000 24 C -0.078 4.078 25 C -0.215 4.215 26 C -0.245 4.245 27 C -0.075 4.075 28 C -0.129 4.129 29 O -0.091 6.091 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.140 0.860 45 H 0.071 0.929 46 H 0.175 0.825 47 H 0.183 0.817 48 H 0.095 0.905 49 H 0.117 0.883 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.773 -1.624 -22.584 22.955 hybrid contribution -0.017 0.153 1.352 1.361 sum -3.789 -1.471 -21.232 21.618 Atomic orbital electron populations 1.21842 0.96287 0.99411 1.01020 1.21923 0.96223 1.00038 0.99311 1.19169 0.93766 0.90043 0.86691 0.98649 1.21380 1.30903 1.11822 0.90977 0.91959 1.25601 0.95727 0.95740 1.01057 1.70029 1.39689 1.25109 1.20898 0.85751 0.79206 0.78786 0.78755 1.21505 1.20057 1.19338 1.64791 1.20973 1.33397 1.03816 1.23883 0.88844 1.00821 0.96089 1.21818 0.96199 1.02239 0.93652 1.22394 0.97986 0.93937 0.90854 0.93627 1.22596 0.97025 0.95665 0.91604 0.92454 1.21793 0.97365 1.01362 0.94470 1.23470 0.87294 1.01067 0.95278 1.64719 1.21317 1.33556 1.02211 1.20813 1.03292 0.92136 0.83726 1.22266 0.84809 1.03031 0.97686 1.21817 1.02025 0.98518 0.99098 1.21861 0.94717 1.05452 1.02497 1.23176 0.98794 0.92024 0.93462 1.20470 0.94420 1.02915 0.95062 1.83962 1.36744 1.49519 1.38900 0.92999 0.92241 0.94820 0.94902 0.92402 0.93221 0.90976 0.92032 0.90496 0.89352 0.91566 0.91649 0.92701 0.90499 0.85971 0.92866 0.82510 0.81655 0.90515 0.88301 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 7.88 71.98 0.57 -4.89 16 2 C -0.14 -6.46 4.88 30.60 0.15 -6.31 16 3 C 0.21 10.62 2.82 44.17 0.12 10.75 16 4 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 5 C -0.51 -27.23 6.13 25.60 0.16 -27.07 16 6 H 0.06 3.25 6.24 -2.91 -0.02 3.24 16 7 C 0.02 0.96 5.29 84.65 0.45 1.41 16 8 N -0.92 -52.51 11.38 21.45 0.24 -52.27 16 9 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 10 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 N -0.51 -21.55 5.49 -835.38 -4.59 -26.14 16 14 C 0.03 1.16 4.40 86.67 0.38 1.54 16 15 C -0.10 -2.91 6.53 30.90 0.20 -2.71 16 16 C 0.06 1.75 2.40 46.31 0.11 1.86 16 17 H 0.05 1.45 7.91 -2.38 -0.02 1.43 16 18 C 0.04 1.51 1.45 46.31 0.07 1.58 16 19 H 0.06 2.27 4.22 -2.39 -0.01 2.26 16 20 C -0.11 -3.68 6.80 30.90 0.21 -3.47 16 21 C 0.06 1.59 5.72 86.66 0.50 2.08 16 22 N -0.49 -13.48 5.39 -860.53 -4.63 -18.11 16 23 C 0.13 2.89 5.47 85.56 0.47 3.36 16 24 C -0.03 -0.67 5.84 24.83 0.15 -0.53 16 25 C -0.19 -4.26 10.81 22.19 0.24 -4.02 16 26 C -0.23 -4.41 10.81 22.19 0.24 -4.17 16 27 C -0.02 -0.48 7.32 24.83 0.18 -0.30 16 28 C -0.07 -0.81 10.42 71.24 0.74 -0.07 16 29 O -0.19 -4.74 10.22 -2.57 -0.03 -4.77 16 30 H 0.05 2.39 6.12 -2.39 -0.01 2.38 16 31 H 0.06 2.28 4.24 -2.39 -0.01 2.27 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.03 1.47 5.86 -2.39 -0.01 1.46 16 34 H 0.06 3.14 6.24 -2.38 -0.01 3.12 16 35 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.07 2.89 3.60 -2.38 -0.01 2.89 16 37 H 0.06 2.33 7.67 -2.39 -0.02 2.31 16 38 H 0.08 2.12 7.83 -2.39 -0.02 2.11 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.06 2.18 8.07 -2.38 -0.02 2.16 16 42 H 0.05 1.48 7.46 -2.38 -0.02 1.46 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 1.19 7.91 -2.38 -0.02 1.17 16 46 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 47 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 48 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -61.86 369.38 -1.12 -62.98 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.93 Total: 24.08 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.93 Total: -30.95 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -8.98 Total: -96.52 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.03 Total: -4.77 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -61.86 -1.12 -62.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.159 kcal (2) G-P(sol) polarization free energy of solvation -61.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds