Wall clock time and date at job start Tue Mar 31 2020 12:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47075 * 2 1 4 4 C 1.36009 * 117.00083 * 180.02562 * 3 2 1 5 5 C 1.38695 * 119.97980 * 180.02562 * 4 3 2 6 6 C 1.38111 * 120.01534 * 180.02562 * 5 4 3 7 7 C 1.38856 * 119.98595 * 359.97438 * 6 5 4 8 8 N 1.39937 * 120.02480 * 180.02562 * 7 6 5 9 9 C 1.46951 * 111.00185 * 179.97438 * 8 7 6 10 10 C 1.53053 * 109.36532 * 183.18968 * 9 8 7 11 11 N 1.46960 * 109.36377 * 301.59772 * 10 9 8 12 12 C 1.46893 * 111.00208 * 183.18552 * 11 10 9 13 13 H 1.08997 * 109.47228 * 295.12619 * 12 11 10 14 14 C 1.50705 * 109.47171 * 55.12239 * 12 11 10 15 15 H 1.08007 * 119.99475 * 5.78698 * 14 12 11 16 16 C 1.37870 * 120.00286 * 185.78488 * 14 12 11 17 17 N 1.31512 * 119.99887 * 5.48050 * 16 14 12 18 18 Si 1.86799 * 119.99967 * 185.48303 * 16 14 12 19 19 H 1.48505 * 109.47255 * 269.99492 * 18 16 14 20 20 H 1.48499 * 109.47169 * 29.99674 * 18 16 14 21 21 H 1.48501 * 109.47076 * 149.99955 * 18 16 14 22 22 C 1.52995 * 109.47574 * 175.12227 * 12 11 10 23 23 C 1.53004 * 109.47034 * 304.37351 * 22 12 11 24 24 C 1.46961 * 110.87777 * 59.31718 * 11 10 9 25 25 C 1.46955 * 110.99883 * 303.80281 * 8 7 6 26 26 C 1.38866 * 119.95857 * 0.27436 * 7 6 5 27 27 C 1.38113 * 119.97797 * 359.44567 * 26 7 6 28 28 H 1.08998 * 109.47400 * 60.00107 * 1 2 3 29 29 H 1.09006 * 109.46776 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47035 * 299.99312 * 1 2 3 31 31 H 1.09004 * 109.47156 * 240.00256 * 2 1 3 32 32 H 1.09004 * 109.47529 * 120.00340 * 2 1 3 33 33 H 1.08002 * 119.99236 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.00537 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.48891 * 63.22389 * 9 8 7 36 36 H 1.09006 * 109.48970 * 303.15557 * 9 8 7 37 37 H 1.08999 * 109.48853 * 181.63385 * 10 9 8 38 38 H 1.09000 * 109.48753 * 61.56389 * 10 9 8 39 39 H 0.96999 * 120.00478 * 355.13508 * 17 16 14 40 40 H 1.09003 * 109.46762 * 64.36679 * 22 12 11 41 41 H 1.08997 * 109.47822 * 184.36978 * 22 12 11 42 42 H 1.08996 * 109.46882 * 304.98915 * 23 22 12 43 43 H 1.09003 * 109.47242 * 64.98403 * 23 22 12 44 44 H 1.09002 * 109.47500 * 184.98736 * 23 22 12 45 45 H 1.09003 * 109.48566 * 60.65122 * 24 11 10 46 46 H 1.08997 * 109.48951 * 180.71022 * 24 11 10 47 47 H 1.09005 * 109.48186 * 296.77572 * 25 8 7 48 48 H 1.09000 * 109.49389 * 56.83496 * 25 8 7 49 49 H 1.07996 * 120.00895 * 179.70816 * 26 7 6 50 50 H 1.08000 * 119.98714 * 180.27666 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3547 1.5255 -0.0005 5 6 3.8843 2.8074 0.0000 6 6 5.2534 2.9892 -0.0011 7 6 6.0997 1.8883 -0.0022 8 7 7.4870 2.0716 -0.0027 9 6 8.1888 0.7806 -0.0032 10 6 9.6979 1.0232 0.0765 11 7 10.1196 1.8490 -1.0636 12 6 11.5758 2.0415 -1.0642 13 1 11.8669 2.6149 -0.1841 14 6 12.2601 0.6990 -1.0379 15 1 11.6762 -0.2062 -1.1167 16 6 13.6312 0.6264 -0.9134 17 7 14.3318 1.7205 -0.7094 18 14 14.4938 -1.0261 -1.0345 19 1 14.5878 -1.6356 0.3165 20 1 13.7205 -1.9237 -1.9298 21 1 15.8589 -0.8326 -1.5862 22 6 11.9896 2.8001 -2.3268 23 6 11.4853 2.0495 -3.5610 24 6 9.4176 3.1401 -1.0632 25 6 7.9085 2.8980 -1.1425 26 6 5.5685 0.6053 -0.0079 27 6 4.1992 0.4253 -0.0010 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.2260 3.6635 0.0004 34 1 5.6656 3.9874 -0.0011 35 1 7.9554 0.2401 -0.9206 36 1 7.8691 0.1925 0.8571 37 1 10.2219 0.0679 0.0470 38 1 9.9345 1.5397 1.0068 39 1 13.8933 2.5857 -0.7169 40 1 11.5567 3.8003 -2.3079 41 1 13.0762 2.8752 -2.3660 42 1 11.8466 1.0215 -3.5338 43 1 10.3953 2.0514 -3.5673 44 1 11.8547 2.5407 -4.4612 45 1 9.6511 3.6806 -0.1458 46 1 9.7373 3.7282 -1.9234 47 1 7.6718 2.3819 -2.0730 48 1 7.3845 3.8533 -1.1127 49 1 6.2260 -0.2515 -0.0135 50 1 3.7859 -0.5726 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:20 Heat of formation + Delta-G solvation = -15.373818 kcal Electronic energy + Delta-G solvation = -27170.321997 eV Core-core repulsion = 23583.142801 eV Total energy + Delta-G solvation = -3587.179195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55660 -40.42403 -38.87239 -36.95855 -34.71319 -33.09833 -32.77858 -32.24465 -31.45124 -29.89009 -28.03076 -26.43528 -25.55848 -25.04964 -24.11193 -22.94634 -22.05436 -21.44760 -20.63268 -19.33396 -18.79977 -18.06418 -16.99625 -16.95705 -16.46048 -16.13396 -15.85938 -15.81197 -15.63785 -15.47646 -15.08481 -14.66666 -14.53552 -14.31122 -14.13583 -14.03350 -13.80854 -13.49639 -13.27839 -13.05792 -12.96321 -12.78484 -12.68309 -12.60770 -12.40081 -12.26332 -12.08729 -11.93853 -11.91188 -11.72630 -11.66771 -11.55602 -11.31510 -10.48260 -10.40271 -10.28252 -9.97342 -9.06092 -8.51882 -8.48560 -6.23900 0.34998 0.43926 1.54570 1.62726 1.79574 2.30715 2.58165 2.60735 2.91771 3.16738 3.26293 3.75535 3.88518 3.91299 4.06978 4.07228 4.10543 4.22173 4.26666 4.30388 4.36605 4.39799 4.42768 4.47930 4.49284 4.56550 4.57534 4.68768 4.72792 4.80273 4.87963 4.95641 4.97053 4.98946 5.02952 5.08402 5.13758 5.21602 5.22720 5.28117 5.33839 5.38247 5.49497 5.63660 5.68637 5.94149 5.99437 6.07720 6.24803 6.45510 6.52394 6.54810 6.76596 7.54132 8.84261 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.002593 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.335247 B =10794.681659 C =11409.679283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.333 6.333 4 C 0.091 3.909 5 C -0.132 4.132 6 C -0.105 4.105 7 C 0.066 3.934 8 N -0.497 5.497 9 C 0.069 3.931 10 C 0.070 3.930 11 N -0.523 5.523 12 C 0.209 3.791 13 H -0.052 1.052 14 C -0.576 4.576 15 H 0.052 0.948 16 C -0.030 4.030 17 N -0.941 5.941 18 Si 1.111 2.889 19 H -0.279 1.279 20 H -0.270 1.270 21 H -0.288 1.288 22 C -0.109 4.109 23 C -0.107 4.107 24 C 0.051 3.949 25 C 0.075 3.925 26 C -0.139 4.139 27 C -0.181 4.181 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.008 0.992 39 H 0.258 0.742 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.056 0.944 44 H 0.042 0.958 45 H 0.016 0.984 46 H 0.084 0.916 47 H 0.047 0.953 48 H 0.101 0.899 49 H 0.135 0.865 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.288 -2.082 -0.316 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.045 3.955 5 C -0.151 4.151 6 C -0.125 4.125 7 C -0.031 4.031 8 N -0.213 5.213 9 C -0.058 4.058 10 C -0.059 4.059 11 N -0.248 5.248 12 C 0.102 3.898 13 H -0.035 1.035 14 C -0.615 4.615 15 H 0.070 0.930 16 C -0.228 4.228 17 N -0.580 5.580 18 Si 0.935 3.065 19 H -0.205 1.205 20 H -0.195 1.195 21 H -0.214 1.214 22 C -0.148 4.148 23 C -0.165 4.165 24 C -0.078 4.078 25 C -0.051 4.051 26 C -0.160 4.160 27 C -0.200 4.200 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.026 0.974 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.034 0.966 46 H 0.103 0.897 47 H 0.065 0.935 48 H 0.119 0.881 49 H 0.153 0.847 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.900 -2.663 -0.218 24.049 hybrid contribution -0.689 0.879 0.344 1.168 sum -24.589 -1.785 0.126 24.654 Atomic orbital electron populations 1.21797 0.91489 1.04084 1.03187 1.23016 0.96884 0.81055 1.02006 1.86057 1.18649 1.30910 1.89142 1.19051 0.82661 0.94363 0.99395 1.20467 0.94638 0.95438 1.04559 1.20743 0.91858 0.98425 1.01456 1.19089 0.88266 0.94047 1.01666 1.59379 1.03221 1.17020 1.41717 1.22259 0.92287 0.89648 1.01645 1.21974 0.94318 0.98631 0.90959 1.62184 1.06492 1.14475 1.41632 1.19202 0.84165 0.95231 0.91225 1.03453 1.22064 0.93818 0.92457 1.53114 0.92964 1.26995 0.95980 1.06576 0.93226 1.70871 1.40183 0.99126 1.47816 0.82988 0.74944 0.71238 0.77356 1.20498 1.19531 1.21393 1.21521 0.99220 0.96855 0.97186 1.21299 1.00478 0.99615 0.95078 1.22236 0.93665 0.91748 1.00110 1.22226 0.94347 0.97952 0.90550 1.21297 0.95473 0.96582 1.02616 1.21267 0.93356 0.98870 1.06517 0.91831 0.88358 0.91822 0.91464 0.91440 0.83771 0.84140 0.92965 0.88942 0.90478 0.97414 0.93084 0.94149 0.94499 0.94212 0.92487 0.93859 0.96565 0.89734 0.93515 0.88135 0.84706 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 71.98 0.74 -0.67 16 2 C 0.05 0.60 5.46 71.98 0.39 1.00 16 3 O -0.33 -6.74 10.14 -93.65 -0.95 -7.69 16 4 C 0.09 1.99 6.69 22.49 0.15 2.14 16 5 C -0.13 -2.84 9.98 22.35 0.22 -2.62 16 6 C -0.10 -2.41 9.19 22.39 0.21 -2.20 16 7 C 0.07 1.73 5.64 38.15 0.22 1.94 16 8 N -0.50 -14.60 4.76 -694.63 -3.31 -17.91 16 9 C 0.07 2.11 4.30 86.31 0.37 2.48 16 10 C 0.07 2.75 5.32 86.31 0.46 3.21 16 11 N -0.52 -21.63 3.72 -874.88 -3.25 -24.88 16 12 C 0.21 10.36 1.38 44.17 0.06 10.42 16 13 H -0.05 -2.96 7.65 -2.39 -0.02 -2.98 16 14 C -0.58 -30.97 6.54 25.60 0.17 -30.80 16 15 H 0.05 2.81 6.59 -2.91 -0.02 2.79 16 16 C -0.03 -1.65 5.23 84.65 0.44 -1.21 16 17 N -0.94 -56.57 13.10 21.44 0.28 -56.29 16 18 Si 1.11 49.83 29.91 68.60 2.05 51.88 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 C -0.11 -5.01 4.89 30.59 0.15 -4.86 16 23 C -0.11 -4.38 9.51 71.98 0.68 -3.70 16 24 C 0.05 1.79 5.33 86.31 0.46 2.25 16 25 C 0.07 2.14 5.38 86.31 0.46 2.61 16 26 C -0.14 -3.30 8.82 22.39 0.20 -3.10 16 27 C -0.18 -3.79 9.03 22.35 0.20 -3.59 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.80 7.66 -2.38 -0.02 0.78 16 32 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 33 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.14 2.85 7.18 -2.91 -0.02 2.83 16 35 H 0.05 1.59 7.57 -2.39 -0.02 1.57 16 36 H 0.09 2.53 7.19 -2.38 -0.02 2.52 16 37 H 0.08 3.28 6.18 -2.39 -0.01 3.26 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.26 15.75 5.77 -92.71 -0.53 15.21 16 40 H 0.04 1.67 6.59 -2.39 -0.02 1.65 16 41 H 0.04 1.90 6.12 -2.39 -0.01 1.88 16 42 H 0.04 1.78 7.20 -2.39 -0.02 1.77 16 43 H 0.06 2.16 7.66 -2.39 -0.02 2.15 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.08 2.85 6.27 -2.39 -0.01 2.84 16 47 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 48 H 0.10 2.38 6.82 -2.39 -0.02 2.37 16 49 H 0.14 3.00 5.81 -2.91 -0.02 2.99 16 50 H 0.15 2.33 6.29 -2.91 -0.02 2.31 16 Total: -1.00 -64.44 377.18 1.56 -62.88 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 1.15 Total: 18.71 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 5.59 Total: -26.70 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -6.28 Total: -99.08 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.95 Total: -7.69 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.05 Total: 51.88 kcal Total: -64.44 1.56 -62.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.506 kcal (2) G-P(sol) polarization free energy of solvation -64.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds