Wall clock time and date at job start Tue Mar 31 2020 12:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47202 * 312.55976 * 3 2 1 5 5 C 1.45773 * 117.96243 * 270.02424 * 4 3 2 6 6 C 1.52789 * 110.51365 * 161.05598 * 5 4 3 7 7 C 1.53017 * 108.87890 * 50.49072 * 6 5 4 8 8 C 1.53080 * 108.55774 * 292.68537 * 7 6 5 9 9 C 1.33358 * 117.95832 * 89.99695 * 4 3 2 10 10 O 1.21273 * 118.22589 * 2.35796 * 9 4 3 11 11 C 1.52992 * 109.73070 * 290.62386 * 6 5 4 12 12 C 1.53059 * 109.28709 * 297.01847 * 11 6 5 13 13 N 1.46846 * 109.51061 * 300.98810 * 12 11 6 14 14 C 1.46900 * 111.00169 * 185.90930 * 13 12 11 15 15 C 1.53000 * 109.47090 * 45.75335 * 14 13 12 16 16 C 1.52994 * 109.47506 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47406 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99465 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99916 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99965 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99728 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47030 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46949 * 120.00043 * 21 19 17 24 24 H 1.48498 * 109.46892 * 239.99728 * 21 19 17 25 25 C 1.46856 * 111.22458 * 61.79214 * 13 12 11 26 26 C 1.52993 * 109.72577 * 170.40149 * 6 5 4 27 27 H 4.40642 * 5.51432 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.46983 * 192.56122 * 3 2 1 29 29 H 1.08996 * 109.46766 * 72.56028 * 3 2 1 30 30 H 1.09005 * 109.26727 * 281.32193 * 5 4 3 31 31 H 1.09002 * 109.27051 * 40.81940 * 5 4 3 32 32 H 1.09004 * 109.52318 * 173.00169 * 7 6 5 33 33 H 1.09005 * 109.65287 * 52.44564 * 7 6 5 34 34 H 1.09002 * 109.40012 * 288.70075 * 8 7 6 35 35 H 1.09003 * 109.39573 * 168.88005 * 8 7 6 36 36 H 1.08997 * 109.49977 * 56.96468 * 11 6 5 37 37 H 1.08995 * 109.49828 * 177.07086 * 11 6 5 38 38 H 1.09000 * 109.46402 * 180.98484 * 12 11 6 39 39 H 1.08989 * 109.45790 * 61.00043 * 12 11 6 40 40 H 1.08996 * 109.47176 * 165.75206 * 14 13 12 41 41 H 1.09004 * 109.47111 * 285.75951 * 14 13 12 42 42 H 1.09009 * 109.46934 * 300.00299 * 15 14 13 43 43 H 1.08998 * 109.46954 * 60.00005 * 15 14 13 44 44 H 1.09000 * 109.47108 * 300.00579 * 16 15 14 45 45 H 1.09005 * 109.46911 * 59.99616 * 16 15 14 46 46 H 0.96997 * 119.99414 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.46247 * 178.19266 * 25 13 12 48 48 H 1.08998 * 109.46726 * 58.21309 * 25 13 12 49 49 H 1.09003 * 109.49405 * 182.91666 * 26 6 5 50 50 H 1.08991 * 109.50257 * 302.99224 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.9333 1.0173 5 6 3.3618 -0.4208 2.3630 6 6 3.4066 -1.5672 3.3720 7 6 4.3810 -2.6335 2.8671 8 6 3.7941 -3.2713 1.6053 9 6 3.3436 -2.1995 0.6548 10 8 3.1605 -2.5017 -0.5053 11 6 2.0121 -2.1784 3.5216 12 6 1.0558 -1.1243 4.0847 13 7 1.5512 -0.6579 5.3860 14 6 0.5876 0.2510 6.0212 15 6 -0.8189 -0.3416 5.9149 16 6 -1.8226 0.6052 6.5758 17 6 -3.2081 0.0217 6.4706 18 1 -3.3577 -0.9295 5.9816 19 6 -4.2847 0.7024 6.9987 20 7 -4.1024 1.8605 7.5946 21 14 -6.0020 -0.0212 6.8688 22 1 -5.9379 -1.3238 6.1586 23 1 -6.5570 -0.2262 8.2309 24 1 -6.8763 0.9115 6.1133 25 6 2.8684 -0.0216 5.2565 26 6 3.8795 -1.0424 4.7291 27 1 -1.0499 0.0000 0.0003 28 1 3.0088 1.0039 0.2235 29 1 3.0094 -0.3072 -0.9804 30 1 4.3094 0.1174 2.3877 31 1 2.5541 0.2609 2.6294 32 1 4.5161 -3.3960 3.6342 33 1 5.3401 -2.1719 2.6321 34 1 2.9427 -3.8952 1.8774 35 1 4.5543 -3.8864 1.1235 36 1 1.6542 -2.5110 2.5472 37 1 2.0585 -3.0284 4.2023 38 1 0.0652 -1.5618 4.2088 39 1 0.9971 -0.2821 3.3953 40 1 0.8487 0.3811 7.0714 41 1 0.6136 1.2175 5.5178 42 1 -1.0800 -0.4718 4.8646 43 1 -0.8449 -1.3081 6.4182 44 1 -1.5617 0.7358 7.6261 45 1 -1.7965 1.5716 6.0722 46 1 -4.8598 2.3391 7.9663 47 1 3.1937 0.3416 6.2314 48 1 2.8008 0.8152 4.5613 49 1 3.9597 -1.8717 5.4319 50 1 4.8532 -0.5660 4.6158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040070.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:44 Heat of formation + Delta-G solvation = 11.796504 kcal Electronic energy + Delta-G solvation = -27801.248723 eV Core-core repulsion = 24215.247722 eV Total energy + Delta-G solvation = -3586.001002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43746 -39.17800 -36.64799 -35.60079 -33.84494 -32.67152 -32.20587 -30.87226 -30.53859 -28.02346 -27.28259 -25.84319 -24.72996 -23.63898 -22.68889 -21.65176 -20.40438 -19.69359 -18.49937 -17.79219 -16.89295 -16.67546 -16.46302 -16.00291 -15.52158 -15.06682 -14.76778 -14.54110 -14.50123 -14.23207 -14.01677 -13.85439 -13.63763 -13.35291 -13.34823 -12.58140 -12.46367 -12.33695 -12.20356 -12.01352 -11.60943 -11.45692 -11.42231 -11.22633 -10.96285 -10.79846 -10.76296 -10.71692 -10.54103 -10.35766 -10.25666 -10.15944 -9.79579 -9.62907 -9.34693 -9.12622 -9.04225 -8.35537 -8.02984 -6.00771 -4.02803 2.21762 2.45741 2.75594 3.22536 3.30325 3.37914 3.42185 4.04515 4.19621 4.26567 4.30615 4.35467 4.41094 4.46290 4.86351 4.87438 4.97185 5.09934 5.11602 5.17206 5.20814 5.29761 5.35265 5.36224 5.41751 5.51340 5.54979 5.57596 5.63830 5.69208 5.78161 5.82229 5.85525 5.87453 5.97689 6.03319 6.10883 6.15914 6.23109 6.27842 6.68000 6.75794 7.07117 7.16660 7.36877 7.37763 7.51617 7.66916 7.81356 7.91327 7.99445 8.42672 9.04531 9.61375 11.10692 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.003108 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.479761 B = 9006.583698 C = 9936.785117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.216 4.216 3 C 0.218 3.782 4 N -0.596 5.596 5 C 0.117 3.883 6 C -0.072 4.072 7 C -0.112 4.112 8 C -0.134 4.134 9 C 0.520 3.480 10 O -0.554 6.554 11 C -0.106 4.106 12 C 0.049 3.951 13 N -0.536 5.536 14 C 0.057 3.943 15 C -0.112 4.112 16 C 0.022 3.978 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.051 3.949 26 C -0.099 4.099 27 H 0.218 0.782 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.027 0.973 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.016 0.984 45 H 0.013 0.987 46 H 0.259 0.741 47 H 0.075 0.925 48 H 0.030 0.970 49 H 0.079 0.921 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.772 -5.332 -10.783 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.217 4.217 3 C 0.096 3.904 4 N -0.328 5.328 5 C -0.005 4.005 6 C -0.073 4.073 7 C -0.149 4.149 8 C -0.174 4.174 9 C 0.309 3.691 10 O -0.433 6.433 11 C -0.144 4.144 12 C -0.078 4.078 13 N -0.261 5.261 14 C -0.070 4.070 15 C -0.149 4.149 16 C -0.015 4.015 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.077 4.077 26 C -0.137 4.137 27 H 0.235 0.765 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.031 0.969 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.048 0.952 49 H 0.098 0.902 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.688 -5.778 -10.976 24.121 hybrid contribution -1.450 0.585 -0.406 1.615 sum 19.238 -5.193 -11.382 22.948 Atomic orbital electron populations 1.25070 0.96056 0.99096 0.98902 1.23369 0.94811 1.01676 1.01852 1.18291 0.84037 0.93831 0.94259 1.47308 1.65048 1.09383 1.11041 1.21685 1.01897 0.96730 0.80235 1.20799 0.96697 0.94854 0.94950 1.21691 0.98249 0.98316 0.96687 1.21691 1.03343 0.96861 0.95501 1.20233 0.76642 0.83017 0.89164 1.90715 1.52485 1.80453 1.19608 1.21687 0.93023 0.98935 1.00715 1.22215 0.99212 0.97056 0.89366 1.62038 1.02404 1.39753 1.21921 1.22275 0.92822 0.93154 0.98765 1.21790 0.92250 1.00405 1.00498 1.19066 0.92668 0.94087 0.95704 1.21278 0.92189 1.05589 1.36566 0.92691 1.25026 0.99179 0.94942 0.95342 1.69977 1.30853 1.14340 1.38384 0.86558 0.84606 0.79216 0.77769 1.19729 1.20983 1.21052 1.22108 0.90136 0.94974 1.00488 1.21564 0.97701 0.99756 0.94676 0.76473 0.88340 0.87308 0.91362 0.90081 0.90076 0.91086 0.87880 0.88229 0.91910 0.90473 0.89323 0.95140 0.91024 0.95483 0.93268 0.92558 0.96564 0.96878 0.93092 0.90653 0.95205 0.90201 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 19.25 29.55 0.57 -1.54 16 2 C -0.22 -2.68 13.66 -37.12 -0.51 -3.19 16 3 C 0.22 2.22 5.70 -6.83 -0.04 2.18 16 4 N -0.60 -6.08 2.63 -178.37 -0.47 -6.55 16 5 C 0.12 1.02 4.39 -4.54 -0.02 1.00 16 6 C -0.07 -0.60 0.51 -154.62 -0.08 -0.68 16 7 C -0.11 -0.76 4.93 -26.68 -0.13 -0.89 16 8 C -0.13 -1.12 5.40 -28.10 -0.15 -1.28 16 9 C 0.52 6.01 6.64 -11.87 -0.08 5.93 16 10 O -0.55 -8.48 16.18 5.56 0.09 -8.39 16 11 C -0.11 -1.12 4.19 -26.70 -0.11 -1.23 16 12 C 0.05 0.66 4.61 -3.82 -0.02 0.64 16 13 N -0.54 -7.38 4.80 -234.64 -1.13 -8.50 16 14 C 0.06 0.95 5.27 -3.82 -0.02 0.93 16 15 C -0.11 -2.27 4.40 -26.73 -0.12 -2.39 16 16 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 17 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 21 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.05 0.55 5.18 -3.82 -0.02 0.53 16 26 C -0.10 -0.80 4.87 -26.71 -0.13 -0.93 16 27 H 0.22 2.11 7.80 -54.09 -0.42 1.69 16 28 H 0.10 0.74 8.02 -51.93 -0.42 0.32 16 29 H 0.11 1.15 7.13 -51.93 -0.37 0.78 16 30 H 0.07 0.48 8.11 -51.93 -0.42 0.05 16 31 H 0.08 0.82 5.01 -51.93 -0.26 0.56 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 34 H 0.10 0.86 7.02 -51.93 -0.36 0.49 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.71 5.93 -51.93 -0.31 0.40 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.36 5.81 -51.93 -0.30 1.05 16 39 H 0.03 0.43 6.37 -51.94 -0.33 0.10 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 42 H 0.05 0.99 6.21 -51.92 -0.32 0.67 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 48 H 0.03 0.32 6.77 -51.93 -0.35 -0.03 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -33.14 384.12 -9.88 -43.03 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.48 Total: -1.88 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -1.40 Total: -13.96 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.86 Total: -41.27 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.14 -9.88 -43.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040070.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.825 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds