Wall clock time and date at job start Tue Mar 31 2020 12:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47077 * 114.15781 * 3 2 1 5 5 C 1.46768 * 124.34887 * 270.04952 * 4 3 2 6 6 C 1.54526 * 105.48206 * 197.00954 * 5 4 3 7 7 C 1.54486 * 101.72772 * 334.69245 * 6 5 4 8 8 C 1.54102 * 108.60663 * 268.40379 * 7 6 5 9 9 C 1.53792 * 111.88958 * 195.40517 * 8 7 6 10 10 C 1.50855 * 111.44552 * 319.12868 * 9 8 7 11 11 N 1.47530 * 108.06152 * 95.08389 * 10 9 8 12 12 C 1.46905 * 111.00272 * 149.83173 * 11 10 9 13 13 C 1.52993 * 109.46965 * 61.63718 * 12 11 10 14 14 C 1.52995 * 109.47287 * 183.52062 * 13 12 11 15 15 C 1.50702 * 109.47161 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00164 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99704 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99805 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99808 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47102 * 59.99691 * 19 17 15 21 21 H 1.48497 * 109.47204 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47040 * 299.99692 * 19 17 15 23 23 C 1.39817 * 114.90651 * 276.80505 * 11 10 9 24 24 C 1.50748 * 110.47635 * 143.93628 * 7 6 5 25 25 C 1.34436 * 124.34940 * 90.02052 * 4 3 2 26 26 O 1.21277 * 124.96980 * 359.48101 * 25 4 3 27 27 H 4.40639 * 5.51411 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47170 * 354.15959 * 3 2 1 29 29 H 1.08997 * 109.47145 * 234.15622 * 3 2 1 30 30 H 1.08997 * 110.24518 * 316.00684 * 5 4 3 31 31 H 1.09003 * 110.24821 * 78.00974 * 5 4 3 32 32 H 1.09002 * 110.97296 * 216.58977 * 6 5 4 33 33 H 1.08995 * 110.97857 * 92.80367 * 6 5 4 34 34 H 1.09004 * 109.00101 * 74.78804 * 8 7 6 35 35 H 1.09002 * 108.99702 * 316.03032 * 8 7 6 36 36 H 1.08993 * 109.08761 * 198.61320 * 9 8 7 37 37 H 1.09008 * 109.03078 * 79.59477 * 9 8 7 38 38 H 1.09000 * 109.74558 * 335.44247 * 10 9 8 39 39 H 1.09000 * 109.78346 * 214.75041 * 10 9 8 40 40 H 1.08995 * 109.46966 * 181.64331 * 12 11 10 41 41 H 1.09007 * 109.46802 * 301.63939 * 12 11 10 42 42 H 1.09006 * 109.47721 * 303.52710 * 13 12 11 43 43 H 1.09008 * 109.46906 * 63.52507 * 13 12 11 44 44 H 1.08997 * 109.47409 * 300.00337 * 14 13 12 45 45 H 1.09008 * 109.46784 * 60.00371 * 14 13 12 46 46 H 0.97009 * 119.99331 * 179.97438 * 18 17 15 47 47 H 1.08999 * 109.04092 * 182.89016 * 23 11 10 48 48 H 1.08998 * 109.03465 * 301.83918 * 23 11 10 49 49 H 1.08995 * 109.62383 * 94.97189 * 24 7 6 50 50 H 1.09002 * 109.51249 * 334.65268 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5661 -1.2602 5 6 3.4095 -0.2197 -2.4688 6 6 4.2896 0.6867 -3.3585 7 6 3.8871 2.0950 -2.8674 8 6 2.7242 2.6062 -3.7398 9 6 2.5113 4.1210 -3.5813 10 6 2.6534 4.5504 -2.1422 11 7 4.0399 5.0109 -1.9370 12 6 4.1016 6.0500 -0.9003 13 6 3.6101 5.4738 0.4290 14 6 3.5912 6.5782 1.4877 15 6 3.1076 6.0106 2.7972 16 1 2.8408 4.9664 2.8675 17 6 3.0057 6.8243 3.9057 18 7 3.3311 8.0957 3.8201 19 14 2.4070 6.1205 5.5291 20 1 3.3205 5.0339 5.9645 21 1 2.3873 7.1928 6.5563 22 1 1.0363 5.5757 5.3569 23 6 4.9665 3.9949 -1.6838 24 6 5.0795 3.0173 -2.8757 25 6 3.3867 1.8716 -1.4584 26 8 3.2354 2.7427 -0.6283 27 1 -1.0501 0.0001 0.0002 28 1 3.0098 -1.0215 0.1046 29 1 3.0091 0.6026 0.8330 30 1 3.9474 -1.1320 -2.2111 31 1 2.4786 -0.4619 -2.9816 32 1 4.0439 0.5560 -4.4124 33 1 5.3484 0.4991 -3.1800 34 1 1.8098 2.0874 -3.4518 35 1 2.9412 2.3858 -4.7850 36 1 1.5128 4.3795 -3.9335 37 1 3.2496 4.6488 -4.1852 38 1 2.4444 3.7071 -1.4839 39 1 1.9599 5.3640 -1.9297 40 1 5.1305 6.3922 -0.7898 41 1 3.4686 6.8891 -1.1889 42 1 2.6036 5.0748 0.3022 43 1 4.2798 4.6755 0.7488 44 1 4.5975 6.9772 1.6145 45 1 2.9214 7.3766 1.1679 46 1 3.2590 8.6683 4.5999 47 1 5.9427 4.4424 -1.4972 48 1 4.6540 3.4414 -0.7983 49 1 5.1002 3.5804 -3.8087 50 1 5.9937 2.4312 -2.7813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:24 Heat of formation + Delta-G solvation = 50.853416 kcal Electronic energy + Delta-G solvation = -28749.024171 eV Core-core repulsion = 25164.716804 eV Total energy + Delta-G solvation = -3584.307367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.85836 -39.48721 -37.83563 -36.72128 -35.46004 -34.31113 -33.18073 -32.84132 -30.78342 -28.67891 -28.09696 -26.72391 -26.50618 -24.44963 -23.25294 -22.81281 -22.04731 -20.50877 -19.84255 -19.21691 -18.55367 -17.70555 -17.49283 -16.79016 -16.63384 -16.44282 -16.19245 -15.90334 -15.56904 -14.97466 -14.85708 -14.76446 -14.43352 -14.17108 -14.00612 -13.96282 -13.87226 -13.59603 -13.15906 -12.96129 -12.94280 -12.60178 -12.53752 -12.51096 -12.39245 -11.92120 -11.71054 -11.66992 -11.62754 -11.46090 -11.35142 -11.32381 -11.21042 -11.10297 -10.83286 -10.59310 -10.30471 -9.57890 -8.52686 -8.21581 -6.35614 1.31734 1.35544 1.36455 1.44829 1.51315 1.80763 2.36259 2.43500 3.07210 3.22310 3.34798 3.45219 3.55526 3.76533 4.00678 4.10106 4.15024 4.27429 4.32911 4.36771 4.41436 4.46794 4.52650 4.59564 4.69671 4.74729 4.75961 4.82592 4.88407 4.97560 4.99644 5.01020 5.06048 5.13066 5.15694 5.19927 5.22360 5.27244 5.29299 5.33505 5.46679 5.53347 5.63707 5.71625 5.77484 5.82687 6.17134 6.22099 6.39682 6.58591 6.78889 6.80744 7.20751 7.32704 8.87894 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.004260 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.944243 B = 6571.681625 C = 8022.555068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.240 4.240 3 C 0.229 3.771 4 N -0.615 5.615 5 C 0.097 3.903 6 C -0.115 4.115 7 C -0.083 4.083 8 C -0.089 4.089 9 C -0.111 4.111 10 C -0.003 4.003 11 N -0.530 5.530 12 C 0.071 3.929 13 C -0.099 4.099 14 C 0.028 3.972 15 C -0.543 4.543 16 H 0.046 0.954 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.269 1.269 23 C 0.016 3.984 24 C -0.086 4.086 25 C 0.494 3.506 26 O -0.515 6.515 27 H 0.242 0.758 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.027 0.973 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.034 0.966 43 H 0.035 0.965 44 H -0.010 1.010 45 H -0.013 1.013 46 H 0.265 0.735 47 H 0.043 0.957 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -23.444 -20.201 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.241 4.241 3 C 0.108 3.892 4 N -0.347 5.347 5 C -0.024 4.024 6 C -0.152 4.152 7 C -0.086 4.086 8 C -0.126 4.126 9 C -0.149 4.149 10 C -0.129 4.129 11 N -0.252 5.252 12 C -0.057 4.057 13 C -0.138 4.138 14 C -0.009 4.009 15 C -0.581 4.581 16 H 0.065 0.935 17 C -0.197 4.197 18 N -0.572 5.572 19 Si 0.789 3.211 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.194 1.194 23 C -0.113 4.113 24 C -0.124 4.124 25 C 0.286 3.714 26 O -0.396 6.396 27 H 0.259 0.741 28 H 0.156 0.844 29 H 0.100 0.900 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.008 0.992 45 H 0.005 0.995 46 H 0.074 0.926 47 H 0.061 0.939 48 H 0.085 0.915 49 H 0.106 0.894 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.588 -22.744 -20.063 30.334 hybrid contribution -0.944 0.323 2.217 2.431 sum -0.355 -22.421 -17.847 28.659 Atomic orbital electron populations 1.25769 0.96993 0.99786 0.97841 1.24099 0.95967 1.01535 1.02504 1.18297 0.83130 1.01670 0.86081 1.48502 1.64550 1.08204 1.13398 1.22432 1.00552 0.95541 0.83859 1.22976 1.01100 0.89508 1.01602 1.21188 0.97423 0.98675 0.91309 1.21825 0.95652 0.94953 1.00213 1.21379 1.01581 0.96212 0.95688 1.23035 0.88360 1.01974 0.99519 1.59376 1.07257 1.14282 1.44320 1.22034 1.00037 0.94362 0.89308 1.21718 0.99029 0.97499 0.95603 1.18959 0.94454 0.93875 0.93638 1.21568 1.44408 0.95659 0.96432 0.93531 1.25996 0.95416 0.95156 1.03097 1.70098 1.49505 1.06122 1.31459 0.85502 0.79061 0.78245 0.78251 1.19178 1.19900 1.19449 1.21936 0.94487 0.94374 1.00504 1.21387 0.96017 0.95961 0.99015 1.21607 0.76788 0.81952 0.91050 1.90408 1.52260 1.45048 1.51851 0.74146 0.84433 0.89958 0.87518 0.90315 0.86055 0.88291 0.92814 0.87555 0.91955 0.90902 0.87647 0.95447 0.92228 0.92728 0.94754 0.94595 0.99213 0.99476 0.92599 0.93883 0.91492 0.89413 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.00 19.25 74.32 1.43 -2.56 16 2 C -0.24 -5.65 13.68 31.13 0.43 -5.23 16 3 C 0.23 4.63 6.40 84.57 0.54 5.18 16 4 N -0.61 -11.95 2.89 -828.56 -2.39 -14.34 16 5 C 0.10 0.94 7.31 86.85 0.64 1.57 16 6 C -0.11 -0.95 6.14 31.62 0.19 -0.76 16 7 C -0.08 -1.49 0.56 -52.63 -0.03 -1.52 16 8 C -0.09 -1.54 4.80 31.23 0.15 -1.39 16 9 C -0.11 -2.70 5.43 30.16 0.16 -2.54 16 10 C 0.00 -0.11 3.96 85.49 0.34 0.23 16 11 N -0.53 -18.90 4.09 -913.03 -3.74 -22.64 16 12 C 0.07 3.04 5.13 86.30 0.44 3.48 16 13 C -0.10 -5.05 3.77 30.59 0.12 -4.94 16 14 C 0.03 1.72 4.97 29.85 0.15 1.87 16 15 C -0.54 -34.78 9.11 25.60 0.23 -34.54 16 16 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 17 C 0.00 0.06 5.46 84.66 0.46 0.52 16 18 N -0.93 -60.60 13.29 21.45 0.28 -60.32 16 19 Si 0.97 47.80 29.54 68.60 2.03 49.83 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 21 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 23 C 0.02 0.51 4.45 88.12 0.39 0.91 16 24 C -0.09 -1.79 5.11 30.40 0.16 -1.64 16 25 C 0.49 12.87 5.56 87.86 0.49 13.36 16 26 O -0.51 -19.06 8.66 -3.02 -0.03 -19.09 16 27 H 0.24 3.43 7.80 -4.41 -0.03 3.40 16 28 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 2.09 7.93 -2.39 -0.02 2.08 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.12 0.37 7.58 -2.39 -0.02 0.35 16 33 H 0.10 0.62 7.43 -2.39 -0.02 0.60 16 34 H 0.05 0.99 7.94 -2.38 -0.02 0.97 16 35 H 0.11 1.14 7.70 -2.39 -0.02 1.12 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.76 7.29 -2.38 -0.02 1.74 16 38 H 0.11 4.05 2.86 -33.40 -0.10 3.96 16 39 H 0.03 1.06 7.72 -2.39 -0.02 1.04 16 40 H 0.06 2.53 7.89 -2.39 -0.02 2.51 16 41 H 0.05 2.39 8.03 -2.38 -0.02 2.37 16 42 H 0.03 1.82 6.71 -2.38 -0.02 1.81 16 43 H 0.04 1.88 6.76 -2.38 -0.02 1.86 16 44 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 46 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 47 H 0.04 1.44 7.83 -2.39 -0.02 1.42 16 48 H 0.07 2.58 3.01 -9.97 -0.03 2.55 16 49 H 0.09 1.72 7.16 -2.39 -0.02 1.70 16 50 H 0.09 1.46 7.36 -2.39 -0.02 1.44 16 Total: -1.00 -82.46 374.78 3.24 -79.22 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.80 Total: 15.34 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 6.29 Total: -28.00 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -5.85 Total: -97.30 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.03 Total: -19.09 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -82.46 3.24 -79.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.074 kcal (2) G-P(sol) polarization free energy of solvation -82.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds