Wall clock time and date at job start Tue Mar 31 2020 12:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46849 * 2 1 4 4 N 1.46901 * 109.47230 * 180.02562 * 3 2 1 5 5 C 1.46904 * 110.99501 * 66.04625 * 4 3 2 6 6 C 1.53009 * 109.46680 * 199.87236 * 5 4 3 7 7 C 1.46903 * 111.00351 * 189.99718 * 4 3 2 8 8 C 1.52998 * 109.46754 * 75.84853 * 7 4 3 9 9 N 1.46496 * 109.47242 * 174.83156 * 8 7 4 10 10 C 1.34774 * 120.00378 * 179.97438 * 9 8 7 11 11 O 1.21285 * 119.99871 * 0.02562 * 10 9 8 12 12 C 1.50702 * 120.00387 * 180.02562 * 10 9 8 13 13 H 1.09000 * 109.46929 * 300.00325 * 12 10 9 14 14 C 1.50699 * 109.46780 * 60.00384 * 12 10 9 15 15 H 1.08008 * 119.99756 * 235.25356 * 14 12 10 16 16 C 1.37877 * 120.00307 * 55.25557 * 14 12 10 17 17 N 1.31515 * 120.00107 * 1.96839 * 16 14 12 18 18 Si 1.86799 * 120.00007 * 181.97043 * 16 14 12 19 19 H 1.48502 * 109.47139 * 89.99777 * 18 16 14 20 20 H 1.48500 * 109.47123 * 209.99637 * 18 16 14 21 21 H 1.48494 * 109.47451 * 329.99868 * 18 16 14 22 22 C 1.50704 * 109.47113 * 180.02562 * 12 10 9 23 23 C 1.38236 * 119.99661 * 47.42865 * 22 12 10 24 24 C 1.38234 * 119.99568 * 180.02562 * 23 22 12 25 25 C 1.38236 * 120.00278 * 359.94817 * 24 23 22 26 26 C 1.38237 * 119.99820 * 0.02562 * 25 24 23 27 27 C 1.38230 * 119.99940 * 227.40005 * 22 12 10 28 28 H 1.09003 * 109.46731 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46838 * 299.99839 * 1 2 3 30 30 H 1.08991 * 109.47371 * 59.99788 * 1 2 3 31 31 H 1.09000 * 109.46838 * 240.00161 * 2 1 3 32 32 H 1.08991 * 109.47371 * 120.00212 * 2 1 3 33 33 H 1.09000 * 109.47269 * 60.00425 * 3 2 1 34 34 H 1.09005 * 109.47512 * 300.00214 * 3 2 1 35 35 H 1.08993 * 109.47481 * 319.87313 * 5 4 3 36 36 H 1.08999 * 109.47033 * 79.87889 * 5 4 3 37 37 H 1.08997 * 109.47013 * 304.78411 * 6 5 4 38 38 H 1.09004 * 109.46680 * 64.78206 * 6 5 4 39 39 H 1.09001 * 109.46692 * 184.78069 * 6 5 4 40 40 H 1.09000 * 109.46923 * 315.85141 * 7 4 3 41 41 H 1.09000 * 109.47419 * 195.84585 * 7 4 3 42 42 H 1.09000 * 109.47167 * 54.83476 * 8 7 4 43 43 H 1.09000 * 109.47260 * 294.83881 * 8 7 4 44 44 H 0.97003 * 119.99948 * 0.02562 * 9 8 7 45 45 H 0.96997 * 120.00101 * 180.02562 * 17 16 14 46 46 H 1.07999 * 120.00220 * 359.96705 * 23 22 12 47 47 H 1.08000 * 120.00090 * 179.97438 * 24 23 22 48 48 H 1.07995 * 120.00490 * 179.72426 * 25 24 23 49 49 H 1.07999 * 119.99887 * 179.97438 * 26 25 24 50 50 H 1.08007 * 120.00196 * 0.02562 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0348 0.8860 -1.2543 6 6 5.4843 0.4420 -1.0467 7 6 4.0355 2.7932 0.2374 8 6 3.8896 3.1434 1.7196 9 7 4.5250 4.4374 1.9805 10 6 4.5198 4.9518 3.2262 11 8 3.9895 4.3432 4.1314 12 6 5.1730 6.2832 3.4945 13 1 6.2306 6.2274 3.2369 14 6 4.5078 7.3463 2.6589 15 1 5.0994 7.9621 1.9974 16 6 3.1440 7.5331 2.7387 17 7 2.4290 6.8098 3.5725 18 14 2.3121 8.8134 1.6626 19 1 1.9014 8.1898 0.3789 20 1 1.1137 9.3439 2.3609 21 1 3.2597 9.9243 1.3923 22 6 5.0294 6.6281 4.9545 23 6 5.3262 5.6844 5.9200 24 6 5.1940 6.0006 7.2591 25 6 4.7659 7.2607 7.6328 26 6 4.4696 8.2046 6.6673 27 6 4.6014 7.8882 5.3281 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.4314 0.0287 -1.5526 36 1 3.9960 1.6466 -2.0340 37 1 6.0699 1.2792 -0.6670 38 1 5.5139 -0.3775 -0.3286 39 1 5.9015 0.1079 -1.9967 40 1 3.4770 3.5118 -0.3624 41 1 5.0885 2.8271 -0.0420 42 1 4.3706 2.3742 2.3238 43 1 2.8320 3.1993 1.9774 44 1 4.9488 4.9243 1.2565 45 1 1.4695 6.9410 3.6283 46 1 5.6605 4.6998 5.6280 47 1 5.4255 5.2632 8.0135 48 1 4.6584 7.5064 8.6790 49 1 4.1348 9.1890 6.9592 50 1 4.3695 8.6256 4.5737 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362195274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:09 Heat of formation + Delta-G solvation = -19.315110 kcal Electronic energy + Delta-G solvation = -27295.493652 eV Core-core repulsion = 23708.143549 eV Total energy + Delta-G solvation = -3587.350103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.99248 -38.34738 -37.25713 -34.14756 -33.56877 -33.28630 -30.86221 -30.68772 -29.63041 -28.41633 -26.97521 -25.16986 -23.88016 -22.68272 -21.69583 -21.20951 -20.41200 -20.35037 -19.07785 -16.79716 -16.12728 -15.75004 -15.69772 -15.17762 -15.02079 -14.85496 -14.57028 -14.23902 -14.03597 -13.62005 -13.51513 -13.30548 -12.98861 -12.86116 -12.39729 -12.19038 -12.06436 -12.01173 -11.83671 -11.80524 -11.69844 -11.40434 -11.25371 -11.19803 -10.99598 -10.96566 -10.76957 -10.57761 -10.43738 -10.38213 -10.01135 -9.63260 -9.33956 -8.69664 -8.34373 -8.25488 -7.90585 -7.64585 -7.35418 -6.11620 -4.27969 2.58982 2.65776 3.18780 3.28940 3.29472 3.68618 4.20705 4.34398 4.58201 4.79153 4.94586 4.97096 5.07681 5.14616 5.16529 5.24584 5.31840 5.40708 5.44353 5.52831 5.63237 5.63885 5.76088 5.81544 5.89537 5.91202 5.96126 6.01785 6.09664 6.09979 6.17232 6.21052 6.34335 6.38308 6.46449 6.65098 6.72258 6.85587 6.95313 7.07824 7.10049 7.17870 7.26007 7.57901 7.62481 7.68751 7.71024 7.83522 8.20826 8.31417 8.65052 8.85686 9.38384 9.76903 10.88696 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.003560 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.053397 B = 7862.664371 C = 8615.752925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.051 3.949 4 N -0.536 5.536 5 C 0.047 3.953 6 C -0.147 4.147 7 C 0.045 3.955 8 C 0.135 3.865 9 N -0.738 5.738 10 C 0.551 3.449 11 O -0.547 6.547 12 C 0.056 3.944 13 H 0.056 0.944 14 C -0.540 4.540 15 H 0.066 0.934 16 C 0.075 3.925 17 N -0.841 5.841 18 Si 0.885 3.115 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.271 1.271 22 C -0.014 4.014 23 C -0.100 4.100 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.065 4.065 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.394 0.606 45 H 0.264 0.736 46 H 0.107 0.893 47 H 0.101 0.899 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 -9.021 -7.717 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.077 4.077 4 N -0.260 5.260 5 C -0.081 4.081 6 C -0.204 4.204 7 C -0.083 4.083 8 C 0.010 3.990 9 N -0.391 5.391 10 C 0.340 3.660 11 O -0.423 6.423 12 C 0.035 3.965 13 H 0.074 0.926 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.133 4.133 17 N -0.473 5.473 18 Si 0.712 3.288 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.015 4.015 23 C -0.118 4.118 24 C -0.163 4.163 25 C -0.163 4.163 26 C -0.167 4.167 27 C -0.083 4.083 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.226 0.774 45 H 0.074 0.926 46 H 0.125 0.875 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.943 -9.812 -6.574 11.969 hybrid contribution -1.081 1.434 -1.602 2.407 sum 0.862 -8.378 -8.176 11.738 Atomic orbital electron populations 1.21744 0.95739 1.01553 1.01968 1.21550 0.95309 0.96473 1.02428 1.22245 0.87040 0.97128 1.01288 1.61887 1.07596 1.22061 1.34479 1.22145 0.96743 0.99054 0.90166 1.21777 0.95450 1.01942 1.01258 1.22302 1.00376 0.88572 0.97067 1.20912 0.98269 0.86273 0.93527 1.45731 1.60804 1.20973 1.11582 1.20959 0.78324 0.85957 0.80738 1.90539 1.45350 1.62008 1.44436 1.17885 0.95696 0.91697 0.91239 0.92596 1.20695 0.92376 1.18852 1.25866 0.91568 1.25047 0.97621 0.95847 0.94809 1.70079 1.06761 1.37533 1.32952 0.86699 0.79435 0.82015 0.80635 1.20693 1.21134 1.19586 1.19820 0.93949 0.92680 0.95036 1.20975 1.00000 0.98371 0.92466 1.20820 1.03317 0.96231 0.95911 1.20767 1.03164 0.94534 0.97881 1.20986 1.03162 0.98554 0.93955 1.21144 0.95275 0.97460 0.94433 0.92684 0.92403 0.93002 0.92230 0.91044 0.90116 0.95062 0.90695 0.94950 0.92425 0.92023 0.92708 0.94196 0.90399 0.92043 0.92753 0.77354 0.92559 0.87495 0.88120 0.88247 0.88090 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.24 5.91 -26.73 -0.16 -1.40 16 3 C 0.05 0.62 4.78 -3.82 -0.02 0.60 16 4 N -0.54 -6.74 4.36 -234.62 -1.02 -7.76 16 5 C 0.05 0.48 5.55 -3.82 -0.02 0.46 16 6 C -0.15 -1.39 10.07 37.16 0.37 -1.02 16 7 C 0.04 0.62 4.92 -3.82 -0.02 0.60 16 8 C 0.14 2.40 5.71 -4.04 -0.02 2.37 16 9 N -0.74 -14.60 5.46 -60.30 -0.33 -14.93 16 10 C 0.55 13.11 5.45 -10.99 -0.06 13.05 16 11 O -0.55 -14.78 13.97 5.55 0.08 -14.70 16 12 C 0.06 1.32 2.77 -94.07 -0.26 1.06 16 13 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 14 C -0.54 -13.13 7.12 -34.44 -0.25 -13.37 16 15 H 0.07 1.56 7.81 -52.48 -0.41 1.15 16 16 C 0.07 1.88 3.99 -17.82 -0.07 1.81 16 17 N -0.84 -23.01 10.89 55.43 0.60 -22.41 16 18 Si 0.88 19.80 29.54 -169.99 -5.02 14.78 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 C -0.01 -0.33 4.52 -104.62 -0.47 -0.81 16 23 C -0.10 -2.30 8.21 -39.58 -0.33 -2.63 16 24 C -0.14 -3.02 10.05 -39.58 -0.40 -3.42 16 25 C -0.15 -2.93 10.05 -39.58 -0.40 -3.32 16 26 C -0.15 -3.15 10.05 -39.58 -0.40 -3.55 16 27 C -0.07 -1.54 8.20 -39.59 -0.32 -1.87 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.56 6.25 -51.93 -0.32 0.23 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.14 6.72 -51.93 -0.35 0.79 16 34 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 35 H 0.07 0.70 5.88 -51.93 -0.31 0.40 16 36 H 0.03 0.33 8.00 -51.93 -0.42 -0.08 16 37 H 0.06 0.59 6.67 -51.93 -0.35 0.24 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.04 0.57 8.00 -51.93 -0.42 0.16 16 41 H 0.08 0.99 6.46 -51.93 -0.34 0.65 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 1.10 6.96 -51.93 -0.36 0.74 16 44 H 0.39 7.01 8.36 -40.82 -0.34 6.67 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.11 2.45 7.03 -52.49 -0.37 2.08 16 47 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 48 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 49 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 50 H 0.13 3.09 6.01 -52.48 -0.32 2.78 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -29.45 392.67 -10.72 -40.17 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -8.50 Total: 11.41 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.45 Total: -12.47 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.75 Total: -45.10 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.08 Total: -14.70 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.45 -10.72 -40.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362195274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.851 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds