Wall clock time and date at job start Tue Mar 31 2020 12:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 N 1.46502 * 109.47070 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00327 * 275.31129 * 4 3 2 6 6 H 1.08008 * 119.99944 * 37.57408 * 5 4 3 7 7 C 1.38816 * 120.00246 * 217.58035 * 5 4 3 8 8 N 1.31621 * 119.99591 * 21.41584 * 7 5 4 9 9 Si 1.86796 * 120.00034 * 201.41941 * 7 5 4 10 10 H 1.48498 * 109.46993 * 59.99938 * 9 7 5 11 11 H 1.48504 * 109.46827 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47291 * 299.99576 * 9 7 5 13 13 C 1.46498 * 119.99785 * 95.30675 * 4 3 2 14 14 C 1.53005 * 109.47487 * 269.99992 * 13 4 3 15 15 N 1.46498 * 109.47487 * 180.02562 * 14 13 4 16 16 C 1.34770 * 119.99882 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00441 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99896 * 179.97438 * 16 15 14 19 19 H 1.09003 * 109.47159 * 60.00630 * 18 16 15 20 20 C 1.52995 * 109.47625 * 300.00576 * 18 16 15 21 21 C 1.50700 * 109.47371 * 180.02562 * 18 16 15 22 22 C 1.38264 * 119.99768 * 60.00281 * 21 18 16 23 23 C 1.38207 * 120.00041 * 179.97438 * 22 21 18 24 24 C 1.38263 * 119.99892 * 359.97438 * 23 22 21 25 25 C 1.38209 * 119.99961 * 0.02562 * 24 23 22 26 26 C 1.50710 * 119.99711 * 180.02562 * 25 24 23 27 27 C 1.38217 * 120.00378 * 239.73332 * 21 18 16 28 28 H 1.09007 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47122 * 300.00339 * 1 2 3 30 30 H 1.09000 * 109.46621 * 60.00493 * 1 2 3 31 31 H 1.08997 * 109.47167 * 239.99185 * 2 1 3 32 32 H 1.09006 * 109.46657 * 119.99965 * 2 1 3 33 33 H 1.09001 * 109.47206 * 59.99981 * 3 2 1 34 34 H 1.09000 * 109.47031 * 299.99256 * 3 2 1 35 35 H 0.96995 * 119.99599 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47315 * 150.00325 * 13 4 3 37 37 H 1.08995 * 109.47263 * 29.99844 * 13 4 3 38 38 H 1.09003 * 109.46571 * 59.99877 * 14 13 4 39 39 H 1.09007 * 109.46850 * 300.00631 * 14 13 4 40 40 H 0.96999 * 119.99603 * 0.02562 * 15 14 13 41 41 H 1.09000 * 109.47222 * 59.99682 * 20 18 16 42 42 H 1.09003 * 109.47592 * 180.02562 * 20 18 16 43 43 H 1.09003 * 109.46897 * 300.00215 * 20 18 16 44 44 H 1.08000 * 119.99598 * 0.02562 * 22 21 18 45 45 H 1.07994 * 120.00179 * 180.02562 * 23 22 21 46 46 H 1.08000 * 119.99996 * 180.02562 * 24 23 22 47 47 H 1.09000 * 109.46789 * 89.99930 * 26 25 24 48 48 H 1.08996 * 109.46657 * 210.00079 * 26 25 24 49 49 H 1.08995 * 109.46876 * 330.00175 * 26 25 24 50 50 H 1.08000 * 119.99573 * 359.97438 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1893 1.3329 1.1817 6 1 3.8170 0.6875 1.9636 7 6 5.3613 2.0514 1.3741 8 7 5.6020 3.1240 0.6501 9 14 6.5968 1.4961 2.6604 10 1 7.0657 0.1247 2.3367 11 1 7.7548 2.4257 2.6682 12 1 5.9524 1.4961 3.9982 13 6 4.2380 1.5597 -1.2624 14 6 4.4933 0.1641 -1.8354 15 7 5.2268 0.2812 -3.0981 16 6 5.5645 -0.8271 -3.7865 17 8 5.2609 -1.9214 -3.3609 18 6 6.3186 -0.7065 -5.0857 19 1 7.2708 -0.2065 -4.9081 20 6 5.4920 0.1095 -6.0814 21 6 6.5701 -2.0811 -5.6499 22 6 5.5052 -2.9077 -5.9573 23 6 5.7359 -4.1681 -6.4753 24 6 7.0314 -4.6022 -6.6866 25 6 8.0959 -3.7759 -6.3794 26 6 9.5081 -4.2490 -6.6103 27 6 7.8651 -2.5134 -5.8654 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8901 35 1 6.4211 3.6258 0.7843 36 1 5.1904 2.0592 -1.0848 37 1 3.6492 2.1414 -1.9716 38 1 3.5409 -0.3355 -2.0129 39 1 5.0821 -0.4177 -1.1261 40 1 5.4700 1.1565 -3.4382 41 1 5.3097 1.1038 -5.6735 42 1 6.0372 0.1963 -7.0213 43 1 4.5398 -0.3905 -6.2590 44 1 4.4932 -2.5680 -5.7933 45 1 4.9041 -4.8136 -6.7157 46 1 7.2117 -5.5870 -7.0918 47 1 9.8225 -3.9758 -7.6176 48 1 10.1714 -3.7810 -5.8830 49 1 9.5514 -5.3322 -6.4974 50 1 8.6968 -1.8659 -5.6298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691194367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:00 Heat of formation + Delta-G solvation = -17.353158 kcal Electronic energy + Delta-G solvation = -26714.028546 eV Core-core repulsion = 23126.763520 eV Total energy + Delta-G solvation = -3587.265026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.16760 -38.69244 -36.49142 -34.43098 -34.21462 -32.88247 -32.30859 -30.82505 -29.82832 -27.97495 -26.88059 -25.57037 -24.79531 -23.40063 -22.16893 -21.41235 -20.75532 -20.20394 -19.33960 -16.99441 -16.66031 -16.42973 -15.70197 -15.39561 -15.07797 -14.66405 -14.61004 -14.31254 -13.94917 -13.84240 -13.53030 -13.48449 -13.08622 -13.02132 -12.85777 -12.77942 -12.41724 -12.33949 -12.24254 -11.77254 -11.61969 -11.57619 -11.45234 -11.19029 -10.97279 -10.94276 -10.88347 -10.73525 -10.45052 -10.36138 -10.08560 -9.88233 -9.72589 -9.39280 -8.77425 -8.56507 -8.54278 -8.42069 -6.62910 -5.84710 -3.43362 1.35275 1.42101 2.99645 3.35077 3.40740 3.45199 3.52195 3.88622 4.45627 4.50372 4.71310 4.83930 5.01606 5.04461 5.14356 5.18241 5.26410 5.30884 5.42855 5.46186 5.48058 5.53058 5.66413 5.67104 5.69737 5.73795 5.76343 5.97861 6.01938 6.04532 6.12435 6.12842 6.24014 6.27952 6.42557 6.48735 6.53790 6.55258 6.62270 6.64671 6.66310 6.91431 6.97350 7.02131 7.03340 7.18142 7.53561 7.79004 7.96343 8.46848 8.63135 9.13626 9.75510 10.33397 11.15300 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.003110 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.194438 B = 9002.239280 C =10125.656160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.261 4.261 6 H 0.061 0.939 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.138 3.862 14 C 0.098 3.902 15 N -0.719 5.719 16 C 0.511 3.489 17 O -0.538 6.538 18 C -0.075 4.075 19 H 0.102 0.898 20 C -0.139 4.139 21 C -0.057 4.057 22 C -0.088 4.088 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.093 4.093 26 C -0.112 4.112 27 C -0.114 4.114 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.255 0.745 36 H 0.098 0.902 37 H 0.028 0.972 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.396 0.604 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 -7.818 -16.721 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.391 4.391 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.011 3.989 14 C -0.027 4.027 15 N -0.370 5.370 16 C 0.295 3.705 17 O -0.415 6.415 18 C -0.097 4.097 19 H 0.120 0.880 20 C -0.197 4.197 21 C -0.057 4.057 22 C -0.106 4.106 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.093 4.093 26 C -0.169 4.169 27 C -0.132 4.132 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.230 0.770 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.873 -8.436 -16.347 18.490 hybrid contribution 0.807 0.052 0.609 1.012 sum 2.680 -8.384 -15.738 18.032 Atomic orbital electron populations 1.21722 0.97345 1.00393 1.00985 1.22189 0.93795 1.00959 1.01574 1.20933 0.85071 0.92948 0.98885 1.43594 0.99419 1.84829 1.02085 1.18978 1.05732 1.20409 0.93961 0.92148 1.25172 1.00797 0.94521 0.98124 1.69986 1.25707 1.14747 1.42522 0.86474 0.81010 0.78306 0.81663 1.20802 1.21566 1.20591 1.21054 1.00263 0.91234 0.86397 1.22442 0.94793 1.02652 0.82838 1.46120 1.57904 1.08401 1.24600 1.20365 0.79838 0.84752 0.85516 1.90704 1.54614 1.26553 1.69667 1.20339 1.00754 0.94817 0.93760 0.87985 1.21781 0.99955 0.99480 0.98451 1.19313 0.93365 0.94743 0.98310 1.20892 0.98744 0.93834 0.97121 1.21074 0.96735 0.96123 0.99812 1.20969 0.92451 0.99425 1.01328 1.19813 0.95618 0.94295 0.99580 1.20762 0.92804 1.01377 1.01913 1.20877 0.95986 0.95856 1.00459 0.93821 0.93197 0.93485 0.92953 0.92378 0.93598 0.94777 0.93482 0.88435 0.95376 0.93097 0.91893 0.77028 0.91459 0.91446 0.91909 0.86376 0.86263 0.86462 0.91413 0.91625 0.91719 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.15 -2.68 6.23 -26.73 -0.17 -2.85 16 3 C 0.15 3.07 5.72 -4.04 -0.02 3.05 16 4 N -0.58 -13.96 2.43 -173.23 -0.42 -14.39 16 5 C -0.26 -6.99 9.45 -15.06 -0.14 -7.13 16 6 H 0.06 1.63 7.92 -52.48 -0.42 1.22 16 7 C 0.01 0.38 4.95 -17.43 -0.09 0.30 16 8 N -0.89 -24.57 11.47 55.49 0.64 -23.94 16 9 Si 0.90 21.41 29.60 -169.99 -5.03 16.38 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.14 3.04 5.45 -4.04 -0.02 3.01 16 14 C 0.10 1.99 6.00 -4.04 -0.02 1.96 16 15 N -0.72 -11.89 5.45 -60.29 -0.33 -12.22 16 16 C 0.51 8.50 7.02 -10.99 -0.08 8.42 16 17 O -0.54 -11.16 15.11 5.55 0.08 -11.07 16 18 C -0.08 -0.93 2.90 -92.93 -0.27 -1.20 16 19 H 0.10 1.10 7.88 -51.93 -0.41 0.69 16 20 C -0.14 -1.37 8.90 37.15 0.33 -1.03 16 21 C -0.06 -0.75 4.40 -104.62 -0.46 -1.21 16 22 C -0.09 -1.18 7.93 -39.58 -0.31 -1.50 16 23 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 24 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16 25 C -0.09 -1.05 5.88 -104.62 -0.62 -1.67 16 26 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 27 C -0.11 -1.39 9.33 -39.58 -0.37 -1.76 16 28 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.99 6.64 -51.93 -0.34 0.65 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.10 2.41 5.52 -51.93 -0.29 2.12 16 37 H 0.03 0.57 7.86 -51.93 -0.41 0.17 16 38 H 0.05 1.06 6.64 -51.93 -0.34 0.71 16 39 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.40 5.49 7.89 -40.82 -0.32 5.17 16 41 H 0.07 0.59 7.57 -51.93 -0.39 0.20 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.64 7.39 -51.93 -0.38 0.26 16 44 H 0.12 1.61 7.52 -52.49 -0.39 1.21 16 45 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 49 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 50 H 0.12 1.24 7.95 -52.49 -0.42 0.82 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -31.14 403.49 -10.00 -41.13 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -8.73 Total: 5.63 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.29 Total: -7.60 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.11 Total: -50.54 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.14 -10.00 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691194367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.781 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds