Wall clock time and date at job start Tue Mar 31 2020 11:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 H 1.09001 * 109.47136 * 54.76767 * 3 2 1 5 5 C 1.53008 * 109.47269 * 174.76665 * 3 2 1 6 6 C 1.50703 * 109.46896 * 293.99486 * 5 3 2 7 7 O 1.21287 * 119.99877 * 353.86939 * 6 5 3 8 8 N 1.34775 * 120.00126 * 173.87258 * 6 5 3 9 9 C 1.46494 * 120.00146 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47317 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47366 * 179.97438 * 10 9 8 12 12 H 1.09005 * 109.47122 * 55.00618 * 11 10 9 13 13 C 1.52999 * 109.47230 * 174.99747 * 11 10 9 14 14 N 1.46498 * 109.47383 * 295.00373 * 11 10 9 15 15 C 1.36937 * 120.00143 * 155.00006 * 14 11 10 16 16 H 1.08000 * 120.00121 * 359.97438 * 15 14 11 17 17 C 1.38810 * 119.99799 * 180.02562 * 15 14 11 18 18 N 1.31614 * 120.00404 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99694 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47118 * 90.00116 * 19 17 15 21 21 H 1.48502 * 109.46884 * 209.99511 * 19 17 15 22 22 H 1.48493 * 109.47172 * 329.99758 * 19 17 15 23 23 C 1.50698 * 109.47217 * 294.76618 * 3 2 1 24 24 C 1.38236 * 119.99846 * 299.72575 * 23 3 2 25 25 C 1.38242 * 119.99836 * 179.78755 * 24 23 3 26 26 C 1.38228 * 119.99964 * 0.44465 * 25 24 23 27 27 C 1.38237 * 120.00097 * 359.80976 * 26 25 24 28 28 C 1.38227 * 120.00190 * 119.99938 * 23 3 2 29 29 H 1.08996 * 109.46980 * 295.25688 * 1 2 3 30 30 H 1.08995 * 109.47108 * 175.25032 * 1 2 3 31 31 H 1.09003 * 109.46878 * 55.25011 * 1 2 3 32 32 H 1.08997 * 109.47360 * 120.00235 * 2 1 3 33 33 H 1.08999 * 109.47480 * 240.00249 * 2 1 3 34 34 H 1.09001 * 109.46788 * 53.98981 * 5 3 2 35 35 H 1.08996 * 109.47122 * 173.99468 * 5 3 2 36 36 H 0.96998 * 119.99563 * 0.02562 * 8 6 5 37 37 H 1.09006 * 109.47548 * 300.00165 * 9 8 6 38 38 H 1.09008 * 109.47160 * 60.00074 * 9 8 6 39 39 H 1.08998 * 109.46978 * 300.00214 * 10 9 8 40 40 H 1.09008 * 109.46958 * 59.99935 * 10 9 8 41 41 H 1.09009 * 109.46811 * 60.00538 * 13 11 10 42 42 H 1.09002 * 109.47092 * 179.97438 * 13 11 10 43 43 H 1.08994 * 109.47855 * 300.00419 * 13 11 10 44 44 H 0.96996 * 119.99915 * 334.99632 * 14 11 10 45 45 H 0.97003 * 120.00558 * 179.97438 * 18 17 15 46 46 H 1.08002 * 119.99960 * 0.02562 * 24 23 3 47 47 H 1.07996 * 119.99856 * 180.27389 * 25 24 23 48 48 H 1.07996 * 119.99880 * 179.83548 * 26 25 24 49 49 H 1.07997 * 119.99940 * 180.02562 * 27 26 25 50 50 H 1.08003 * 119.99989 * 359.97438 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 0.8394 5 6 3.5644 1.4445 0.1316 6 6 3.9525 0.9071 1.4850 7 8 3.0963 0.6616 2.3082 8 7 5.2509 0.6994 1.7806 9 6 5.6281 0.1775 3.0965 10 6 7.1497 0.0364 3.1721 11 6 7.5438 -0.5080 4.5465 12 1 7.0110 -1.4403 4.7345 13 6 9.0513 -0.7667 4.5796 14 7 7.1935 0.4711 5.5784 15 6 6.9619 0.0585 6.8634 16 1 7.0370 -0.9888 7.1161 17 6 6.6295 0.9862 7.8410 18 7 6.5375 2.2625 7.5330 19 14 6.3128 0.4232 9.5938 20 1 7.5859 0.4442 10.3581 21 1 5.3340 1.3357 10.2375 22 1 5.7670 -0.9576 9.5791 23 6 1.6463 2.1145 -1.2901 24 6 2.0911 1.6080 -2.4970 25 6 1.7263 2.2219 -3.6807 26 6 0.9245 3.3476 -3.6570 27 6 0.4840 3.8572 -2.4498 28 6 0.8452 3.2407 -1.2664 29 1 -0.3633 0.4385 0.9294 30 1 -0.3633 -1.0241 -0.0851 31 1 -0.3633 0.5858 -0.8444 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.9971 0.8158 -0.6467 35 1 3.9370 2.4632 0.0247 36 1 5.9356 0.8962 1.1224 37 1 5.2884 0.8650 3.8711 38 1 5.1645 -0.7975 3.2472 39 1 7.4898 -0.6509 2.3975 40 1 7.6130 1.0116 3.0215 41 1 9.5842 0.1655 4.3917 42 1 9.3321 -1.1542 5.5589 43 1 9.3120 -1.4952 3.8119 44 1 7.1258 1.4117 5.3515 45 1 6.3049 2.9108 8.2161 46 1 2.7203 0.7304 -2.5153 47 1 2.0702 1.8236 -4.6238 48 1 0.6417 3.8287 -4.5816 49 1 -0.1428 4.7364 -2.4313 50 1 0.5010 3.6388 -0.3232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753017653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:42 Heat of formation + Delta-G solvation = -30.724051 kcal Electronic energy + Delta-G solvation = -26089.528397 eV Core-core repulsion = 22501.683566 eV Total energy + Delta-G solvation = -3587.844831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.23010 -39.16956 -36.70050 -35.68855 -34.26901 -32.26546 -31.14058 -31.10774 -30.24466 -29.00803 -27.96082 -25.00270 -23.74052 -23.13758 -22.50517 -22.38026 -20.68059 -20.00963 -19.45284 -17.48659 -17.17353 -16.57545 -15.74225 -15.61763 -15.43904 -15.04893 -14.83773 -14.49112 -14.14262 -14.04627 -13.60736 -13.50556 -13.39464 -13.33866 -12.89816 -12.71247 -12.53889 -12.45947 -12.03314 -11.93936 -11.55097 -11.52912 -11.30384 -11.11455 -11.06146 -10.89367 -10.74578 -10.68867 -10.66350 -10.60611 -10.26870 -9.97479 -9.63024 -9.53693 -9.14028 -8.90804 -8.88328 -8.74722 -6.93065 -5.72994 -3.01606 1.13583 1.17873 2.83319 3.35418 3.46496 3.51875 3.53553 3.59000 4.47331 4.50748 4.62793 4.76831 4.79596 4.88841 4.90649 5.05268 5.15815 5.26887 5.28440 5.31927 5.34340 5.41472 5.43914 5.58284 5.61263 5.71396 5.72400 5.76594 5.85360 5.87902 5.90309 6.03241 6.08875 6.17562 6.19362 6.22293 6.29216 6.32364 6.37289 6.41522 6.48922 6.52708 6.71287 6.74771 6.78932 6.88034 7.07533 7.70001 7.73941 8.43705 8.45396 9.56736 10.13511 10.48043 11.49690 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.002274 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.697137 B =12311.924096 C =12905.343973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.035 4.035 4 H 0.090 0.910 5 C -0.133 4.133 6 C 0.507 3.493 7 O -0.534 6.534 8 N -0.731 5.731 9 C 0.122 3.878 10 C -0.132 4.132 11 C 0.174 3.826 12 H 0.049 0.951 13 C -0.163 4.163 14 N -0.723 5.723 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.067 4.067 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.128 4.128 27 C -0.119 4.119 28 C -0.115 4.115 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.395 0.605 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.053 0.947 43 H 0.035 0.965 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.982 -0.603 -25.388 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.054 4.054 4 H 0.108 0.892 5 C -0.174 4.174 6 C 0.293 3.707 7 O -0.411 6.411 8 N -0.382 5.382 9 C -0.001 4.001 10 C -0.171 4.171 11 C 0.063 3.937 12 H 0.067 0.933 13 C -0.224 4.224 14 N -0.365 5.365 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.068 4.068 24 C -0.134 4.134 25 C -0.138 4.138 26 C -0.147 4.147 27 C -0.137 4.137 28 C -0.133 4.133 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.228 0.772 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.649 -0.883 -24.602 26.093 hybrid contribution 0.295 0.261 0.584 0.704 sum -8.354 -0.622 -24.018 25.437 Atomic orbital electron populations 1.21726 0.95813 1.01264 1.01752 1.21650 0.96258 0.95038 1.02569 1.19995 0.93517 0.97143 0.94711 0.89176 1.21743 0.97189 1.03065 0.95362 1.20565 0.82622 0.78137 0.89372 1.90726 1.49281 1.51001 1.50048 1.46160 1.07458 1.66943 1.17619 1.21436 0.95217 0.99893 0.83560 1.22052 0.94283 1.01623 0.99103 1.20153 0.92950 0.93552 0.87000 0.93332 1.22427 0.99384 0.99995 1.00548 1.42447 1.83143 1.05609 1.05318 1.19219 1.39113 0.92909 0.85586 0.91225 1.24724 1.02688 0.95396 0.98129 1.69651 1.55221 1.00315 1.32939 0.86218 0.77502 0.77519 0.85136 1.21841 1.21815 1.20771 1.19886 0.96911 0.95206 0.94752 1.21010 1.00371 1.00040 0.91960 1.21126 0.98449 0.96181 0.98017 1.21123 0.98759 0.96899 0.97871 1.21149 1.00041 0.99910 0.92572 1.21141 0.98257 0.95562 0.98381 0.92583 0.93059 0.92990 0.90037 0.92551 0.89187 0.88750 0.77161 0.89808 0.91948 0.92008 0.91669 0.93547 0.92739 0.94593 0.78307 0.93568 0.86171 0.86285 0.86396 0.86219 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.80 37.16 0.36 -1.15 16 2 C -0.12 -1.26 5.11 -26.73 -0.14 -1.40 16 3 C -0.03 -0.36 1.68 -91.77 -0.15 -0.52 16 4 H 0.09 1.10 7.56 -51.93 -0.39 0.71 16 5 C -0.13 -1.31 4.89 -27.88 -0.14 -1.45 16 6 C 0.51 7.07 7.38 -10.98 -0.08 6.99 16 7 O -0.53 -9.80 14.31 5.55 0.08 -9.72 16 8 N -0.73 -9.50 5.56 -60.29 -0.33 -9.83 16 9 C 0.12 2.00 5.56 -4.05 -0.02 1.98 16 10 C -0.13 -2.00 4.87 -26.74 -0.13 -2.13 16 11 C 0.17 3.33 2.89 -67.93 -0.20 3.13 16 12 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 13 C -0.16 -2.85 9.49 37.16 0.35 -2.49 16 14 N -0.72 -17.75 4.57 -53.43 -0.24 -17.99 16 15 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 19 Si 0.90 22.75 29.55 -169.99 -5.02 17.73 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 C -0.07 -0.63 3.70 -104.63 -0.39 -1.02 16 24 C -0.12 -0.97 8.71 -39.58 -0.34 -1.32 16 25 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 26 C -0.13 -0.99 10.05 -39.59 -0.40 -1.39 16 27 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 28 C -0.12 -1.06 9.67 -39.59 -0.38 -1.45 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.51 7.24 -51.93 -0.38 0.13 16 32 H 0.08 1.08 6.19 -51.93 -0.32 0.76 16 33 H 0.06 0.53 7.23 -51.93 -0.38 0.15 16 34 H 0.09 0.68 7.59 -51.93 -0.39 0.29 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 3.80 8.47 -40.82 -0.35 3.45 16 37 H 0.08 1.74 7.75 -51.93 -0.40 1.34 16 38 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 41 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.21 16 46 H 0.12 0.85 7.15 -52.49 -0.38 0.48 16 47 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.12 1.05 7.95 -52.48 -0.42 0.63 16 LS Contribution 404.29 15.07 6.09 6.09 Total: -1.00 -32.70 404.29 -10.16 -42.86 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -8.76 Total: 10.66 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -2.69 Total: -12.11 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.15 Total: -55.52 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.70 -10.16 -42.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753017653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.133 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds