Wall clock time and date at job start Tue Mar 31 2020 11:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 H 1.09001 * 109.47136 * 54.76767 * 3 2 1 5 5 C 1.53008 * 109.47269 * 174.76665 * 3 2 1 6 6 C 1.50703 * 109.46896 * 293.99486 * 5 3 2 7 7 O 1.21287 * 119.99877 * 353.86939 * 6 5 3 8 8 N 1.34775 * 120.00126 * 173.87258 * 6 5 3 9 9 C 1.46494 * 120.00146 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47317 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47366 * 179.97438 * 10 9 8 12 12 H 1.09005 * 109.47122 * 55.00618 * 11 10 9 13 13 C 1.52999 * 109.47230 * 174.99747 * 11 10 9 14 14 N 1.46498 * 109.47383 * 295.00373 * 11 10 9 15 15 C 1.36937 * 120.00143 * 155.00006 * 14 11 10 16 16 H 1.08000 * 120.00121 * 359.97438 * 15 14 11 17 17 C 1.38810 * 119.99799 * 180.02562 * 15 14 11 18 18 N 1.31614 * 120.00404 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99694 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47118 * 90.00116 * 19 17 15 21 21 H 1.48502 * 109.46884 * 209.99511 * 19 17 15 22 22 H 1.48493 * 109.47172 * 329.99758 * 19 17 15 23 23 C 1.50698 * 109.47217 * 294.76618 * 3 2 1 24 24 C 1.38236 * 119.99846 * 299.72575 * 23 3 2 25 25 C 1.38242 * 119.99836 * 179.78755 * 24 23 3 26 26 C 1.38228 * 119.99964 * 0.44465 * 25 24 23 27 27 C 1.38237 * 120.00097 * 359.80976 * 26 25 24 28 28 C 1.38227 * 120.00190 * 119.99938 * 23 3 2 29 29 H 1.08996 * 109.46980 * 295.25688 * 1 2 3 30 30 H 1.08995 * 109.47108 * 175.25032 * 1 2 3 31 31 H 1.09003 * 109.46878 * 55.25011 * 1 2 3 32 32 H 1.08997 * 109.47360 * 120.00235 * 2 1 3 33 33 H 1.08999 * 109.47480 * 240.00249 * 2 1 3 34 34 H 1.09001 * 109.46788 * 53.98981 * 5 3 2 35 35 H 1.08996 * 109.47122 * 173.99468 * 5 3 2 36 36 H 0.96998 * 119.99563 * 0.02562 * 8 6 5 37 37 H 1.09006 * 109.47548 * 300.00165 * 9 8 6 38 38 H 1.09008 * 109.47160 * 60.00074 * 9 8 6 39 39 H 1.08998 * 109.46978 * 300.00214 * 10 9 8 40 40 H 1.09008 * 109.46958 * 59.99935 * 10 9 8 41 41 H 1.09009 * 109.46811 * 60.00538 * 13 11 10 42 42 H 1.09002 * 109.47092 * 179.97438 * 13 11 10 43 43 H 1.08994 * 109.47855 * 300.00419 * 13 11 10 44 44 H 0.96996 * 119.99915 * 334.99632 * 14 11 10 45 45 H 0.97003 * 120.00558 * 179.97438 * 18 17 15 46 46 H 1.08002 * 119.99960 * 0.02562 * 24 23 3 47 47 H 1.07996 * 119.99856 * 180.27389 * 25 24 23 48 48 H 1.07996 * 119.99880 * 179.83548 * 26 25 24 49 49 H 1.07997 * 119.99940 * 180.02562 * 27 26 25 50 50 H 1.08003 * 119.99989 * 359.97438 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 0.8394 5 6 3.5644 1.4445 0.1316 6 6 3.9525 0.9071 1.4850 7 8 3.0963 0.6616 2.3082 8 7 5.2509 0.6994 1.7806 9 6 5.6281 0.1775 3.0965 10 6 7.1497 0.0364 3.1721 11 6 7.5438 -0.5080 4.5465 12 1 7.0110 -1.4403 4.7345 13 6 9.0513 -0.7667 4.5796 14 7 7.1935 0.4711 5.5784 15 6 6.9619 0.0585 6.8634 16 1 7.0370 -0.9888 7.1161 17 6 6.6295 0.9862 7.8410 18 7 6.5375 2.2625 7.5330 19 14 6.3128 0.4232 9.5938 20 1 7.5859 0.4442 10.3581 21 1 5.3340 1.3357 10.2375 22 1 5.7670 -0.9576 9.5791 23 6 1.6463 2.1145 -1.2901 24 6 2.0911 1.6080 -2.4970 25 6 1.7263 2.2219 -3.6807 26 6 0.9245 3.3476 -3.6570 27 6 0.4840 3.8572 -2.4498 28 6 0.8452 3.2407 -1.2664 29 1 -0.3633 0.4385 0.9294 30 1 -0.3633 -1.0241 -0.0851 31 1 -0.3633 0.5858 -0.8444 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.9971 0.8158 -0.6467 35 1 3.9370 2.4632 0.0247 36 1 5.9356 0.8962 1.1224 37 1 5.2884 0.8650 3.8711 38 1 5.1645 -0.7975 3.2472 39 1 7.4898 -0.6509 2.3975 40 1 7.6130 1.0116 3.0215 41 1 9.5842 0.1655 4.3917 42 1 9.3321 -1.1542 5.5589 43 1 9.3120 -1.4952 3.8119 44 1 7.1258 1.4117 5.3515 45 1 6.3049 2.9108 8.2161 46 1 2.7203 0.7304 -2.5153 47 1 2.0702 1.8236 -4.6238 48 1 0.6417 3.8287 -4.5816 49 1 -0.1428 4.7364 -2.4313 50 1 0.5010 3.6388 -0.3232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753017653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:41 Heat of formation + Delta-G solvation = -50.093795 kcal Electronic energy + Delta-G solvation = -26090.368333 eV Core-core repulsion = 22501.683566 eV Total energy + Delta-G solvation = -3588.684766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.15957 -40.05525 -38.18092 -36.61115 -35.70203 -34.13768 -32.00701 -31.73915 -31.29205 -30.54360 -29.29870 -26.10180 -25.57767 -23.81630 -23.73210 -23.15106 -21.87236 -21.21518 -20.53193 -19.27522 -18.28973 -17.38177 -17.00809 -16.87057 -16.50694 -16.20876 -15.84906 -15.61988 -15.38073 -15.20684 -14.99345 -14.76204 -14.42745 -14.17745 -14.11235 -13.81512 -13.59376 -13.45830 -13.35864 -13.22480 -12.82324 -12.76070 -12.62967 -12.31969 -12.24731 -12.21854 -12.11815 -11.97997 -11.86986 -11.64453 -11.61014 -11.50210 -11.45179 -10.95711 -10.72856 -10.01705 -9.74752 -9.53886 -8.97813 -7.93107 -5.19669 0.51077 0.57090 1.44982 1.46775 1.54633 1.71775 2.27464 2.56529 2.95258 3.41092 3.64411 3.73478 3.92650 4.02153 4.04825 4.14983 4.17678 4.23026 4.27655 4.33781 4.37008 4.39587 4.51576 4.58109 4.67749 4.69411 4.71505 4.78249 4.81428 4.91407 4.95757 5.03518 5.05121 5.11782 5.12965 5.21059 5.24435 5.25296 5.37565 5.40213 5.40623 5.53507 5.54730 5.62375 5.66409 5.70139 5.82048 6.19104 6.30093 6.65568 7.35843 7.37144 8.14360 8.35337 9.30536 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.002274 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.697137 B =12311.924096 C =12905.343973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.030 4.030 4 H 0.060 0.940 5 C -0.122 4.122 6 C 0.502 3.498 7 O -0.585 6.585 8 N -0.716 5.716 9 C 0.133 3.867 10 C -0.115 4.115 11 C 0.163 3.837 12 H 0.041 0.959 13 C -0.153 4.153 14 N -0.735 5.735 15 C -0.232 4.232 16 H 0.074 0.926 17 C -0.080 4.080 18 N -0.970 5.970 19 Si 0.966 3.034 20 H -0.286 1.286 21 H -0.299 1.299 22 H -0.272 1.272 23 C -0.075 4.075 24 C -0.119 4.119 25 C -0.122 4.122 26 C -0.132 4.132 27 C -0.127 4.127 28 C -0.134 4.134 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.416 0.584 37 H 0.032 0.968 38 H 0.048 0.952 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.032 0.968 43 H 0.076 0.924 44 H 0.371 0.629 45 H 0.248 0.752 46 H 0.137 0.863 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.133 0.867 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.921 -1.647 -28.596 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.049 4.049 4 H 0.079 0.921 5 C -0.161 4.161 6 C 0.290 3.710 7 O -0.465 6.465 8 N -0.369 5.369 9 C 0.009 3.991 10 C -0.153 4.153 11 C 0.054 3.946 12 H 0.059 0.941 13 C -0.213 4.213 14 N -0.376 5.376 15 C -0.364 4.364 16 H 0.092 0.908 17 C -0.272 4.272 18 N -0.622 5.622 19 Si 0.796 3.204 20 H -0.213 1.213 21 H -0.226 1.226 22 H -0.197 1.197 23 C -0.075 4.075 24 C -0.137 4.137 25 C -0.140 4.140 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.152 4.152 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.142 0.858 35 H 0.127 0.873 36 H 0.253 0.747 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.095 0.905 44 H 0.203 0.797 45 H 0.057 0.943 46 H 0.155 0.845 47 H 0.160 0.840 48 H 0.156 0.844 49 H 0.151 0.849 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.542 -1.968 -27.868 28.938 hybrid contribution -0.056 0.539 1.483 1.579 sum -7.598 -1.428 -26.385 27.495 Atomic orbital electron populations 1.21689 0.95722 1.01665 1.01140 1.21598 0.96393 0.95189 1.02010 1.19865 0.93817 0.96684 0.94576 0.92117 1.21753 0.96900 1.04216 0.93260 1.21372 0.82158 0.77059 0.90430 1.90713 1.50738 1.53114 1.51980 1.45960 1.07995 1.66272 1.16674 1.21047 0.96206 0.97822 0.84023 1.21902 0.92840 1.02831 0.97736 1.20473 0.94208 0.92194 0.87706 0.94073 1.22261 0.97294 1.00976 1.00744 1.42650 1.83278 1.06035 1.05591 1.19598 1.36841 0.92959 0.86989 0.90838 1.25494 1.04056 0.95635 1.01969 1.69805 1.57396 1.01298 1.33677 0.85234 0.77164 0.77234 0.80768 1.21304 1.22611 1.19655 1.19755 0.97789 0.95500 0.94478 1.21202 1.00428 1.00510 0.91576 1.21444 0.97908 0.95914 0.98743 1.21446 0.98261 0.96931 0.98386 1.21367 1.00234 1.00387 0.92492 1.21244 0.99005 0.96173 0.98774 0.94201 0.92298 0.92366 0.92935 0.90478 0.85762 0.87262 0.74651 0.94981 0.93330 0.87623 0.91076 0.93644 0.94920 0.90530 0.79688 0.94296 0.84548 0.84020 0.84366 0.84937 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.80 71.98 0.71 -2.29 16 2 C -0.11 -2.43 5.11 30.59 0.16 -2.27 16 3 C -0.03 -0.63 1.68 -11.54 -0.02 -0.65 16 4 H 0.06 1.60 7.56 -2.39 -0.02 1.58 16 5 C -0.12 -2.21 4.89 29.85 0.15 -2.06 16 6 C 0.50 13.97 7.38 87.66 0.65 14.61 16 7 O -0.59 -22.64 14.31 -3.05 -0.04 -22.68 16 8 N -0.72 -17.84 5.56 -463.06 -2.57 -20.41 16 9 C 0.13 4.41 5.56 86.38 0.48 4.90 16 10 C -0.11 -3.24 4.87 30.59 0.15 -3.09 16 11 C 0.16 6.06 2.89 44.99 0.13 6.19 16 12 H 0.04 1.60 8.08 -2.38 -0.02 1.58 16 13 C -0.15 -4.99 9.49 71.98 0.68 -4.31 16 14 N -0.73 -36.67 4.57 -322.95 -1.48 -38.14 16 15 C -0.23 -13.03 9.93 84.03 0.83 -12.20 16 16 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 17 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 18 N -0.97 -61.02 13.06 21.65 0.28 -60.74 16 19 Si 0.97 47.73 29.55 68.60 2.03 49.76 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 23 C -0.08 -1.32 3.70 -19.87 -0.07 -1.39 16 24 C -0.12 -1.67 8.71 22.27 0.19 -1.47 16 25 C -0.12 -1.51 10.05 22.27 0.22 -1.29 16 26 C -0.13 -1.71 10.05 22.27 0.22 -1.48 16 27 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 28 C -0.13 -2.42 9.67 22.27 0.22 -2.21 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.12 7.24 -2.39 -0.02 1.10 16 32 H 0.05 1.44 6.19 -2.39 -0.01 1.42 16 33 H 0.08 1.29 7.23 -2.39 -0.02 1.27 16 34 H 0.12 1.43 7.59 -2.39 -0.02 1.41 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.42 6.79 8.47 -92.71 -0.79 6.01 16 37 H 0.03 1.40 7.75 -2.38 -0.02 1.38 16 38 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.07 1.97 8.14 -2.38 -0.02 1.96 16 41 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.37 20.07 7.80 -92.71 -0.72 19.34 16 45 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.14 1.40 7.15 -2.91 -0.02 1.38 16 47 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 48 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 49 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16 50 H 0.12 2.12 7.95 -2.91 -0.02 2.09 16 Total: -1.00 -74.90 404.29 3.01 -71.89 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: -0.59 Total: 35.26 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 5.39 Total: -14.93 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -3.77 Total: -119.30 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.04 Total: -22.68 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -74.90 3.01 -71.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753017653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.796 kcal (2) G-P(sol) polarization free energy of solvation -74.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds