Wall clock time and date at job start Tue Mar 31 2020 12:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47409 * 2 1 4 4 C 1.53004 * 109.46711 * 119.99531 * 2 1 3 5 5 N 1.46502 * 109.46837 * 174.99951 * 4 2 1 6 6 C 1.46503 * 119.99759 * 269.99756 * 5 4 2 7 7 C 1.36932 * 120.00058 * 90.00261 * 5 4 2 8 8 H 1.08001 * 120.00090 * 20.37995 * 7 5 4 9 9 C 1.38808 * 119.99944 * 200.37899 * 7 5 4 10 10 N 1.31625 * 120.00129 * 15.00497 * 9 7 5 11 11 Si 1.86796 * 120.00158 * 195.00087 * 9 7 5 12 12 H 1.48510 * 109.47195 * 85.00403 * 11 9 7 13 13 H 1.48503 * 109.47608 * 205.00241 * 11 9 7 14 14 H 1.48504 * 109.47275 * 325.00449 * 11 9 7 15 15 N 1.46501 * 109.46946 * 239.99203 * 2 1 3 16 16 C 1.34773 * 120.00042 * 85.00705 * 15 2 1 17 17 O 1.21292 * 119.99700 * 359.97438 * 16 15 2 18 18 C 1.50691 * 120.00519 * 179.97438 * 16 15 2 19 19 C 1.52996 * 109.47792 * 179.97438 * 18 16 15 20 20 C 1.52993 * 109.47839 * 179.97438 * 19 18 16 21 21 C 1.52992 * 109.47500 * 180.02562 * 20 19 18 22 22 C 1.50701 * 109.47490 * 180.02562 * 21 20 19 23 23 C 1.38237 * 120.00026 * 269.72708 * 22 21 20 24 24 C 1.38236 * 120.00138 * 179.76344 * 23 22 21 25 25 C 1.38235 * 119.99613 * 0.50333 * 24 23 22 26 26 C 1.38237 * 120.00509 * 359.75096 * 25 24 23 27 27 C 1.38234 * 119.99634 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.46944 * 300.00498 * 1 2 3 29 29 H 1.08999 * 109.46651 * 60.00363 * 1 2 3 30 30 H 1.09003 * 109.47034 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47181 * 294.99695 * 4 2 1 32 32 H 1.09003 * 109.47239 * 55.00349 * 4 2 1 33 33 H 1.08998 * 109.47178 * 95.13062 * 6 5 4 34 34 H 1.09000 * 109.46973 * 215.12963 * 6 5 4 35 35 H 1.08997 * 109.47471 * 335.12679 * 6 5 4 36 36 H 0.96998 * 120.00095 * 179.97438 * 10 9 7 37 37 H 0.97001 * 120.00356 * 265.00256 * 15 2 1 38 38 H 1.09004 * 109.46973 * 300.00255 * 18 16 15 39 39 H 1.09003 * 109.47076 * 59.99236 * 18 16 15 40 40 H 1.09004 * 109.47198 * 300.00275 * 19 18 16 41 41 H 1.09003 * 109.47305 * 59.99534 * 19 18 16 42 42 H 1.09004 * 109.47011 * 300.00464 * 20 19 18 43 43 H 1.09003 * 109.46991 * 59.99417 * 20 19 18 44 44 H 1.09002 * 109.47643 * 299.99794 * 21 20 19 45 45 H 1.09000 * 109.47777 * 60.00136 * 21 20 19 46 46 H 1.08001 * 120.00005 * 359.97438 * 23 22 21 47 47 H 1.07995 * 120.00338 * 180.23482 * 24 23 22 48 48 H 1.08007 * 119.99620 * 179.72289 * 25 24 23 49 49 H 1.07996 * 120.00024 * 179.97438 * 26 25 24 50 50 H 1.07992 * 120.00026 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9920 0.5615 7 6 4.2798 0.1648 1.7241 8 1 3.8671 0.8402 2.4589 9 6 5.6009 0.3015 1.3205 10 7 6.0234 -0.3086 0.2334 11 14 6.7791 1.3514 2.3200 12 1 7.3498 0.5397 3.4249 13 1 7.8760 1.8354 1.4438 14 1 6.0482 2.5136 2.8860 15 7 2.0184 -0.6908 -1.1961 16 6 2.1472 -0.0186 -2.3571 17 8 1.8584 1.1582 -2.4118 18 6 2.6500 -0.7289 -3.5873 19 6 2.7009 0.2539 -4.7588 20 6 3.2120 -0.4671 -6.0077 21 6 3.2635 0.5158 -7.1789 22 6 3.7663 -0.1945 -8.4092 23 6 5.1207 -0.2260 -8.6842 24 6 5.5824 -0.8818 -9.8101 25 6 4.6888 -1.4971 -10.6666 26 6 3.3339 -1.4612 -10.3946 27 6 2.8727 -0.8103 -9.2656 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -0.1582 2.1370 32 1 1.6054 -1.7198 1.2953 33 1 4.3628 -1.7609 -0.4770 34 1 5.0416 -2.2453 1.0955 35 1 3.4385 -2.8373 0.5978 36 1 6.9465 -0.2127 -0.0489 37 1 2.2490 -1.6320 -1.1525 38 1 3.6493 -1.1208 -3.3977 39 1 1.9778 -1.5512 -3.8323 40 1 1.7014 0.6454 -4.9483 41 1 3.3729 1.0765 -4.5141 42 1 4.2115 -0.8583 -5.8179 43 1 2.5404 -1.2900 -6.2526 44 1 2.2641 0.9074 -7.3690 45 1 3.9354 1.3384 -6.9339 46 1 5.8185 0.2588 -8.0175 47 1 6.6408 -0.9096 -10.0229 48 1 5.0491 -2.0056 -11.5487 49 1 2.6358 -1.9416 -11.0640 50 1 1.8143 -0.7818 -9.0533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:55 Heat of formation + Delta-G solvation = -17.812711 kcal Electronic energy + Delta-G solvation = -26218.302329 eV Core-core repulsion = 22631.017375 eV Total energy + Delta-G solvation = -3587.284954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.50845 -39.17356 -36.48397 -35.43981 -33.94950 -32.40570 -31.21378 -31.05445 -30.23295 -28.54356 -26.17162 -25.60830 -24.80653 -22.73731 -22.15051 -21.35581 -20.81641 -20.10483 -19.60371 -16.93066 -16.77557 -16.44404 -15.91123 -15.46780 -15.28013 -15.10629 -14.78440 -14.14484 -13.72536 -13.69311 -13.58435 -13.52470 -13.24003 -13.08605 -12.85037 -12.50492 -12.21362 -12.12460 -11.95993 -11.72712 -11.43724 -11.35666 -11.10558 -11.04703 -10.96737 -10.83496 -10.79901 -10.75470 -10.51917 -10.43997 -10.19222 -9.95775 -9.82346 -9.16897 -9.09486 -8.81847 -8.57239 -8.27789 -6.77040 -5.72229 -3.14709 1.19166 1.22699 3.33118 3.40156 3.46538 3.47446 3.60664 3.89396 4.52190 4.61297 4.66942 4.82025 4.94531 5.02018 5.04685 5.19316 5.31207 5.34961 5.37680 5.46922 5.49496 5.52982 5.64771 5.71134 5.77725 5.84123 5.86170 5.91633 5.93435 6.01652 6.04070 6.10280 6.12743 6.27710 6.30028 6.33511 6.36556 6.49158 6.52308 6.53491 6.56447 6.65057 6.84557 6.92458 7.26276 7.33541 7.65014 7.81554 8.23465 8.38497 8.94608 9.23554 9.86869 10.33924 11.33323 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.002540 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.732676 B =11021.840201 C =12371.624632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.254 4.254 8 H 0.069 0.931 9 C 0.003 3.997 10 N -0.905 5.905 11 Si 0.903 3.097 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.281 1.281 15 N -0.701 5.701 16 C 0.516 3.484 17 O -0.557 6.557 18 C -0.140 4.140 19 C -0.101 4.101 20 C -0.112 4.112 21 C -0.083 4.083 22 C -0.076 4.076 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.120 4.120 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.031 0.969 34 H 0.043 0.957 35 H -0.005 1.005 36 H 0.251 0.749 37 H 0.394 0.606 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.030 -5.075 -17.254 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.102 0.898 4 C 0.015 3.985 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.383 4.383 8 H 0.086 0.914 9 C -0.196 4.196 10 N -0.550 5.550 11 Si 0.734 3.266 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.350 5.350 16 C 0.303 3.697 17 O -0.435 6.435 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.150 4.150 21 C -0.121 4.121 22 C -0.076 4.076 23 C -0.136 4.136 24 C -0.137 4.137 25 C -0.148 4.148 26 C -0.138 4.138 27 C -0.138 4.138 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.013 0.987 36 H 0.061 0.939 37 H 0.228 0.772 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.045 -4.246 -17.328 19.181 hybrid contribution 0.974 0.085 0.418 1.063 sum -6.071 -4.161 -16.910 18.442 Atomic orbital electron populations 1.22147 0.97058 1.00951 1.01571 1.21826 0.91548 0.99127 0.86647 0.89830 1.21185 0.85716 0.97202 0.94437 1.43918 0.99097 1.20865 1.68085 1.20842 0.94518 0.85079 0.97861 1.19180 0.92904 1.09643 1.16611 0.91356 1.24933 0.98608 0.99485 0.96545 1.70061 1.15872 1.46885 1.22161 0.86288 0.80925 0.80018 0.79387 1.21572 1.21834 1.20623 1.45816 1.66192 1.13618 1.09385 1.20474 0.77214 0.87256 0.84782 1.90632 1.51241 1.16152 1.85512 1.21644 1.03241 0.99468 0.93675 1.21299 1.02296 0.97912 0.92341 1.21583 1.01845 0.97884 0.93648 1.20657 1.01768 0.97855 0.91772 1.20013 0.93510 0.97805 0.96241 1.21136 0.95213 0.99761 0.97469 1.21162 0.99630 0.97926 0.94965 1.21126 0.93543 1.00395 0.99759 1.21134 0.95693 0.99540 0.97468 1.21077 0.99547 0.98357 0.94773 0.92238 0.93042 0.93294 0.92411 0.94068 0.95070 0.93856 0.98653 0.93912 0.77221 0.88747 0.89830 0.91546 0.91079 0.91639 0.91990 0.90930 0.90734 0.85945 0.86189 0.86373 0.86285 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 37.16 0.35 -2.07 16 2 C 0.12 2.20 2.88 -67.92 -0.20 2.01 16 3 H 0.08 1.93 7.58 -51.93 -0.39 1.54 16 4 C 0.14 2.78 5.33 -4.04 -0.02 2.76 16 5 N -0.60 -14.35 2.78 -181.12 -0.50 -14.86 16 6 C 0.16 3.73 7.60 59.85 0.45 4.18 16 7 C -0.25 -6.90 9.68 -15.06 -0.15 -7.04 16 8 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 9 C 0.00 0.07 5.06 -17.43 -0.09 -0.02 16 10 N -0.90 -25.91 10.67 55.49 0.59 -25.32 16 11 Si 0.90 22.12 29.58 -169.99 -5.03 17.09 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 N -0.70 -12.75 4.42 -53.80 -0.24 -12.98 16 16 C 0.52 9.71 7.79 -10.99 -0.09 9.63 16 17 O -0.56 -12.44 15.65 5.55 0.09 -12.36 16 18 C -0.14 -2.02 5.70 -27.89 -0.16 -2.18 16 19 C -0.10 -1.36 4.50 -26.74 -0.12 -1.48 16 20 C -0.11 -1.23 5.20 -26.74 -0.14 -1.37 16 21 C -0.08 -0.85 5.35 -27.89 -0.15 -1.00 16 22 C -0.08 -0.78 5.13 -104.62 -0.54 -1.32 16 23 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 26 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 27 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.10 8.03 -51.93 -0.42 0.69 16 32 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 33 H 0.03 0.76 6.97 -51.93 -0.36 0.40 16 34 H 0.04 1.10 7.22 -51.93 -0.37 0.73 16 35 H -0.01 -0.10 7.83 -51.93 -0.41 -0.51 16 36 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.39 6.55 7.18 -40.82 -0.29 6.25 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.07 1.11 8.10 -51.93 -0.42 0.68 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 45 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 46 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 48 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 49 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 50 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 406.16 15.07 6.12 6.12 Total: -1.00 -32.02 406.16 -10.72 -42.74 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -8.96 Total: 5.07 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.80 Total: -5.51 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.15 Total: -53.16 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.02 -10.72 -42.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.927 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds