Wall clock time and date at job start Tue Mar 31 2020 12:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46867 * 180.02562 * 11 10 9 13 13 C 1.34799 * 116.99660 * 180.02562 * 12 11 10 14 14 O 1.21564 * 120.00133 * 359.97438 * 13 12 11 15 15 C 1.47031 * 120.00148 * 179.97438 * 13 12 11 16 16 C 1.36103 * 123.47172 * 0.02562 * 15 13 12 17 17 S 1.70447 * 110.80427 * 179.97438 * 16 15 13 18 18 C 1.75500 * 92.45588 * 359.97438 * 17 16 15 19 19 S 1.76202 * 124.69925 * 180.02562 * 18 17 16 20 20 N 1.65607 * 107.21705 * 269.97606 * 19 18 17 21 21 O 1.42100 * 106.40167 * 23.51370 * 19 18 17 22 22 O 1.42099 * 106.40052 * 156.43915 * 19 18 17 23 23 C 1.32742 * 110.59799 * 359.75448 * 18 17 16 24 24 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 26 26 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 27 27 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 28 28 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 29 29 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 30 30 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 31 31 H 1.07995 * 124.60180 * 359.97438 * 16 15 13 32 32 H 0.97002 * 119.99431 * 359.97438 * 20 19 18 33 33 H 0.96994 * 119.99979 * 180.02562 * 20 19 18 34 34 H 1.08005 * 123.45124 * 180.21236 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 8 2.4236 -6.0908 -0.0006 13 6 1.9083 -7.3364 -0.0016 14 8 0.7032 -7.4957 -0.0024 15 6 2.8039 -8.5025 -0.0016 16 6 4.1615 -8.4063 -0.0001 17 16 4.8780 -9.9529 0.0000 18 6 3.3187 -10.7581 -0.0011 19 16 3.0922 -12.5055 -0.0009 20 7 3.0299 -12.9919 -1.5827 21 8 4.2798 -13.0640 0.5441 22 8 1.8010 -12.7427 0.5430 23 6 2.3336 -9.8684 0.0038 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6245 -2.5571 0.8896 27 1 2.8717 -3.6045 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8531 -5.0451 0.8886 30 1 0.8537 -5.0446 -0.8913 31 1 4.7105 -7.4762 0.0008 32 1 3.1145 -12.3386 -2.2946 33 1 2.9080 -13.9300 -1.7972 34 1 1.2878 -10.1381 0.0074 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028184936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:25 Heat of formation + Delta-G solvation = -171.185217 kcal Electronic energy + Delta-G solvation = -20904.441881 eV Core-core repulsion = 17247.651978 eV Total energy + Delta-G solvation = -3656.789902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59196 -38.82440 -38.24537 -37.61512 -37.03793 -35.95406 -34.10197 -33.72620 -31.72319 -29.07215 -26.75141 -25.30702 -23.76803 -22.19660 -20.97774 -20.60893 -19.85820 -18.90059 -18.45154 -18.43730 -17.74095 -17.69421 -17.28800 -16.71806 -16.50212 -16.22831 -15.78077 -15.04283 -14.53053 -14.47079 -14.23108 -14.06037 -13.78843 -13.75527 -13.31366 -13.29073 -13.19687 -12.81203 -12.77346 -12.56163 -12.53350 -12.38785 -12.11262 -11.82172 -11.46644 -11.45032 -11.39959 -11.26440 -10.82083 -10.57373 -9.77266 -8.22298 -6.34008 -0.91436 -0.71532 0.08049 0.16272 0.44621 1.41104 1.44499 1.50820 1.54362 1.75930 2.07946 2.40955 2.54142 3.11690 3.52968 3.57901 3.75502 3.95509 3.97656 4.02729 4.27282 4.38506 4.49508 4.69390 4.77980 4.87633 5.05803 5.25545 5.31104 5.48180 5.62563 5.79240 6.17733 6.31720 6.54424 6.81987 7.35612 8.89698 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.040254 B = 0.002077 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.424268 B =13474.706207 C =13970.349668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.079 3.921 12 O -0.349 6.349 13 C 0.522 3.478 14 O -0.539 6.539 15 C -0.200 4.200 16 C -0.138 4.138 17 S 0.398 5.602 18 C -0.830 4.830 19 S 2.755 3.245 20 N -1.231 6.231 21 O -0.979 6.979 22 O -0.989 6.989 23 C 0.061 3.939 24 H 0.264 0.736 25 H -0.003 1.003 26 H -0.004 1.004 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.211 0.789 32 H 0.431 0.569 33 H 0.433 0.567 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.145 -27.390 -4.430 30.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.012 4.012 10 C -0.130 4.130 11 C 0.005 3.995 12 O -0.265 6.265 13 C 0.367 3.633 14 O -0.430 6.430 15 C -0.216 4.216 16 C -0.279 4.279 17 S 0.665 5.335 18 C -1.030 5.030 19 S 2.838 3.162 20 N -0.914 5.914 21 O -0.968 6.968 22 O -0.978 6.978 23 C 0.028 3.972 24 H 0.073 0.927 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.228 0.772 32 H 0.262 0.738 33 H 0.267 0.733 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 14.106 -28.282 -3.486 31.797 hybrid contribution -1.984 2.379 -0.547 3.146 sum 12.121 -25.904 -4.033 28.882 Atomic orbital electron populations 1.70096 1.07916 1.28006 1.51382 1.26028 0.95789 1.03585 0.94623 0.85438 0.78177 0.77741 0.79310 1.18940 1.21074 1.19049 1.21590 0.93776 0.91793 1.50943 0.91523 1.18936 0.94308 0.92518 0.95457 1.21456 0.98718 0.90034 1.02759 1.23208 0.90934 0.83279 1.02059 1.86503 1.41623 1.14745 1.83633 1.20808 0.86807 0.83555 0.72175 1.90860 1.17403 1.87169 1.47604 1.19499 0.92613 0.91245 1.18202 1.26871 0.97839 1.08225 0.94926 1.82991 0.99344 0.89324 1.61809 1.35384 1.06346 1.29568 1.31661 0.99970 0.73010 0.70443 0.72738 1.52611 1.93625 1.19902 1.25213 1.93603 1.49694 1.75732 1.77810 1.93601 1.42602 1.83570 1.78044 1.20950 1.00911 0.88605 0.86771 0.92692 0.98470 0.98606 0.91305 0.91133 0.91893 0.91628 0.77169 0.73838 0.73302 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.66 5.53 30.60 0.17 -3.49 16 11 C 0.08 2.82 5.48 71.98 0.39 3.22 16 12 O -0.35 -10.81 9.87 -57.10 -0.56 -11.37 16 13 C 0.52 15.61 7.92 70.13 0.56 16.16 16 14 O -0.54 -19.50 16.59 19.63 0.33 -19.18 16 15 C -0.20 -4.28 5.98 -19.88 -0.12 -4.40 16 16 C -0.14 -1.98 10.56 67.32 0.71 -1.27 16 17 S 0.40 4.10 22.86 -56.49 -1.29 2.81 16 18 C -0.83 -11.81 6.48 66.65 0.43 -11.37 16 19 S 2.75 37.92 6.42 -56.49 -0.36 37.56 16 20 N -1.23 -6.18 9.55 37.02 0.35 -5.82 16 21 O -0.98 -18.05 17.88 -128.00 -2.29 -20.34 16 22 O -0.99 -21.50 17.77 -128.00 -2.27 -23.78 16 23 C 0.06 1.13 9.72 22.68 0.22 1.35 16 24 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 25 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.07 2.65 8.14 -2.39 -0.02 2.64 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.21 2.23 8.02 -2.91 -0.02 2.20 16 32 H 0.43 0.14 8.92 -96.74 -0.86 -0.72 16 33 H 0.43 0.67 8.96 -96.75 -0.87 -0.19 16 34 H 0.17 3.23 8.05 -2.91 -0.02 3.21 16 Total: -1.00 -79.12 335.12 -1.15 -80.27 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -0.57 Total: -1.40 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 3.21 Total: -27.95 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 0.64 Total: -61.99 kcal Atomic # 8 Polarization: -69.87 SS G_CDS: -4.80 Total: -74.67 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 42.02 SS G_CDS: -1.65 Total: 40.37 kcal Total: -79.12 -1.15 -80.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028184936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.916 kcal (2) G-P(sol) polarization free energy of solvation -79.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds