Wall clock time and date at job start Tue Mar 31 2020 12:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47286 * 2 1 4 4 C 1.46504 * 119.99869 * 275.00331 * 3 2 1 5 5 C 1.50700 * 109.46960 * 274.99399 * 4 3 2 6 6 H 1.07997 * 120.00102 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99997 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00316 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00135 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47279 * 89.99268 * 9 7 5 11 11 H 1.48501 * 109.47395 * 209.99887 * 9 7 5 12 12 H 1.48505 * 109.47099 * 329.99795 * 9 7 5 13 13 S 1.65592 * 119.99808 * 94.99677 * 3 2 1 14 14 O 1.42094 * 106.40509 * 336.46358 * 13 3 2 15 15 O 1.42101 * 106.40051 * 203.54317 * 13 3 2 16 16 C 1.76201 * 107.21680 * 90.00586 * 13 3 2 17 17 C 1.33858 * 124.52028 * 89.99684 * 16 13 3 18 18 C 1.37415 * 115.11391 * 179.97438 * 17 16 13 19 19 C 1.36752 * 113.28549 * 0.02562 * 18 17 16 20 20 C 1.46398 * 125.46315 * 180.02562 * 19 18 17 21 21 O 1.21622 * 119.99934 * 359.97438 * 20 19 18 22 22 O 1.34901 * 119.99619 * 179.97438 * 20 19 18 23 23 S 1.70621 * 124.51941 * 269.95614 * 16 13 3 24 24 H 1.09004 * 109.47492 * 60.00313 * 1 2 3 25 25 H 1.09003 * 109.46972 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47055 * 299.99820 * 1 2 3 27 27 H 1.09004 * 109.47361 * 239.99929 * 2 1 3 28 28 H 1.09000 * 109.47595 * 120.00179 * 2 1 3 29 29 H 1.09000 * 109.47201 * 34.99378 * 4 3 2 30 30 H 1.08994 * 109.46930 * 154.99778 * 4 3 2 31 31 H 0.96997 * 120.00437 * 180.02562 * 8 7 5 32 32 H 1.08003 * 122.44823 * 359.97438 * 17 16 13 33 33 H 1.07995 * 123.35992 * 179.73247 * 18 17 16 34 34 H 0.96707 * 116.99434 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1720 1.1112 -1.3840 7 6 3.8524 2.3606 -3.0849 8 7 5.0186 2.0812 -3.6249 9 14 2.6807 3.5322 -3.9473 10 1 2.9450 4.9209 -3.4921 11 1 2.8851 3.4452 -5.4156 12 1 1.2803 3.1621 -3.6197 13 16 2.4121 2.1202 1.4286 14 8 1.6868 1.4415 2.4447 15 8 2.3056 3.5186 1.1998 16 6 4.1169 1.7941 1.7319 17 6 5.1239 2.5702 1.3131 18 6 6.3799 2.1330 1.6588 19 6 6.3687 0.9690 2.3765 20 6 7.5524 0.2701 2.8799 21 8 8.6615 0.7221 2.6680 22 8 7.4130 -0.8753 3.5789 23 16 4.7043 0.4474 2.5994 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.3617 1.8097 -1.9453 30 1 2.0921 3.1802 -1.0756 31 1 5.2705 2.4837 -4.4707 32 1 4.9611 3.4742 0.7450 33 1 7.2859 2.6540 1.3866 34 1 8.2236 -1.3009 3.8904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038059064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:58 Heat of formation + Delta-G solvation = -150.629364 kcal Electronic energy + Delta-G solvation = -22845.834963 eV Core-core repulsion = 19189.936429 eV Total energy + Delta-G solvation = -3655.898534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32655 -38.98499 -38.35758 -37.82372 -37.18700 -37.03286 -34.64760 -31.83547 -31.59061 -28.96096 -27.06895 -24.59982 -23.77903 -23.20822 -21.47568 -20.25860 -19.60428 -19.07357 -18.86267 -18.48119 -17.52677 -17.10260 -16.92382 -16.90581 -16.17164 -15.75730 -15.10344 -14.87622 -14.58058 -14.42268 -14.38416 -14.13510 -13.75241 -13.70409 -13.52819 -13.28149 -13.15645 -12.80669 -12.77599 -12.75253 -12.58823 -12.28372 -12.17320 -12.08259 -11.98792 -11.69094 -11.59980 -10.74883 -10.59208 -9.83948 -9.73343 -8.25427 -6.30204 -1.26163 -0.67933 0.16604 0.47819 0.83212 1.40292 1.43939 1.50270 1.63767 1.78255 1.93796 2.37547 2.58170 3.09710 3.34546 3.89746 3.90868 4.06254 4.16794 4.42159 4.46703 4.62928 4.72053 4.74748 4.94969 5.01351 5.03123 5.05959 5.33072 5.41673 5.43727 5.49154 5.74679 6.31898 6.74900 6.75589 7.34334 8.89397 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.005853 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.407219 B = 4782.391878 C = 6011.723416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.974 5.974 4 C 0.217 3.783 5 C -0.535 4.535 6 H 0.052 0.948 7 C 0.024 3.976 8 N -0.937 5.937 9 Si 0.920 3.080 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.238 1.238 13 S 2.720 3.280 14 O -0.962 6.962 15 O -0.975 6.975 16 C -0.818 4.818 17 C -0.013 4.013 18 C -0.071 4.071 19 C -0.244 4.244 20 C 0.569 3.431 21 O -0.525 6.525 22 O -0.498 6.498 23 S 0.393 5.607 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.266 0.734 32 H 0.156 0.844 33 H 0.171 0.829 34 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 -6.246 12.611 14.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 N -0.813 5.813 4 C 0.093 3.907 5 C -0.575 4.575 6 H 0.070 0.930 7 C -0.175 4.175 8 N -0.577 5.577 9 Si 0.744 3.256 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.161 1.161 13 S 2.806 3.194 14 O -0.953 6.953 15 O -0.966 6.966 16 C -1.021 5.021 17 C -0.048 4.048 18 C -0.106 4.106 19 C -0.365 4.365 20 C 0.412 3.588 21 O -0.417 6.417 22 O -0.313 6.313 23 S 0.666 5.334 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.174 0.826 33 H 0.189 0.811 34 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges -3.584 -6.753 13.561 15.568 hybrid contribution 2.035 1.487 -1.670 3.023 sum -1.549 -5.266 11.891 13.097 Atomic orbital electron populations 1.22211 0.94574 1.03769 1.02157 1.21466 0.95530 0.80495 1.03853 1.57191 1.77805 1.24770 1.21579 1.19475 0.96887 0.92426 0.81931 1.21607 1.01831 1.27940 1.06080 0.92962 1.25602 0.96329 0.97748 0.97819 1.70022 1.22588 1.45515 1.19562 0.86113 0.81468 0.80034 0.77959 1.19652 1.21037 1.16133 1.01135 0.72431 0.73168 0.72669 1.93544 1.69266 1.75697 1.56778 1.93515 1.86032 1.31388 1.85639 1.35739 1.31325 1.13625 1.21365 1.19808 0.90251 0.99732 0.95025 1.21055 0.99554 0.94324 0.95691 1.24249 0.98426 1.02689 1.11102 1.19064 0.86383 0.78836 0.74565 1.90955 1.27196 1.67156 1.56393 1.84542 1.44921 1.35954 1.65901 1.82456 0.92132 1.15878 1.42977 0.92371 0.88874 0.92732 0.89696 0.89515 0.92510 0.94044 0.92526 0.82619 0.81134 0.69325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 10.24 71.98 0.74 -3.46 16 2 C 0.11 3.30 6.06 86.38 0.52 3.82 16 3 N -0.97 -35.82 2.77 -519.84 -1.44 -37.26 16 4 C 0.22 9.31 4.50 85.63 0.39 9.69 16 5 C -0.54 -27.27 9.94 25.60 0.25 -27.01 16 6 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 7 C 0.02 1.30 5.47 84.65 0.46 1.76 16 8 N -0.94 -54.47 13.96 21.45 0.30 -54.17 16 9 Si 0.92 40.68 27.47 68.60 1.88 42.57 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 13 S 2.72 99.39 5.77 -56.49 -0.33 99.06 16 14 O -0.96 -33.89 16.79 -128.00 -2.15 -36.04 16 15 O -0.98 -40.87 16.30 -128.00 -2.09 -42.96 16 16 C -0.82 -27.96 6.35 66.82 0.42 -27.53 16 17 C -0.01 -0.44 9.77 21.08 0.21 -0.23 16 18 C -0.07 -2.25 10.01 21.73 0.22 -2.04 16 19 C -0.24 -7.08 6.45 24.05 0.16 -6.92 16 20 C 0.57 14.71 8.30 69.95 0.58 15.29 16 21 O -0.53 -16.26 17.63 19.44 0.34 -15.92 16 22 O -0.50 -8.55 13.29 -58.15 -0.77 -9.32 16 23 S 0.39 10.86 22.68 -56.49 -1.28 9.58 16 24 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 2.56 8.11 -2.38 -0.02 2.54 16 28 H 0.09 2.22 7.61 -2.39 -0.02 2.20 16 29 H 0.06 2.29 7.17 -2.39 -0.02 2.28 16 30 H 0.04 1.83 6.34 -2.39 -0.02 1.82 16 31 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.16 5.60 8.02 -2.91 -0.02 5.57 16 33 H 0.17 4.93 8.06 -2.91 -0.02 4.91 16 34 H 0.44 2.84 9.11 -74.05 -0.67 2.16 16 Total: -1.00 -69.02 329.71 -1.16 -70.18 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.42 Total: 10.90 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 3.95 Total: -36.62 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -1.14 Total: -91.43 kcal Atomic # 8 Polarization: -99.57 SS G_CDS: -4.67 Total: -104.24 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.88 Total: 42.57 kcal Atomic # 16 Polarization: 110.24 SS G_CDS: -1.61 Total: 108.64 kcal Total: -69.02 -1.16 -70.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038059064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.453 kcal (2) G-P(sol) polarization free energy of solvation -69.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds