Wall clock time and date at job start Tue Mar 31 2020 11:59:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38258 * 119.99679 * 2 1
4 4 C 1.38221 * 120.02061 * 179.72862 * 3 2 1
5 5 C 1.38235 * 120.00849 * 0.54863 * 4 3 2
6 6 S 1.76194 * 120.00627 * 179.74801 * 5 4 3
7 7 O 1.42100 * 106.40339 * 130.68487 * 6 5 4
8 8 O 1.42107 * 106.40217 * 357.76675 * 6 5 4
9 9 N 1.65601 * 107.22067 * 244.22581 * 6 5 4
10 10 C 1.36935 * 119.99988 * 63.35812 * 9 6 5
11 11 H 1.08001 * 119.99725 * 5.06555 * 10 9 6
12 12 C 1.38814 * 120.00044 * 185.06893 * 10 9 6
13 13 N 1.31615 * 119.99672 * 359.97438 * 12 10 9
14 14 Si 1.86798 * 119.99971 * 179.97438 * 12 10 9
15 15 H 1.48500 * 109.47375 * 359.97438 * 14 12 10
16 16 H 1.48494 * 109.47090 * 119.99910 * 14 12 10
17 17 H 1.48502 * 109.46960 * 239.99840 * 14 12 10
18 18 C 1.38310 * 119.98970 * 359.47368 * 5 4 3
19 19 Br 1.89101 * 120.00953 * 180.27576 * 18 5 4
20 20 C 1.38192 * 119.99297 * 180.02562 * 2 1 3
21 21 H 1.09005 * 109.47104 * 269.97726 * 1 2 3
22 22 H 1.09003 * 109.47333 * 29.97683 * 1 2 3
23 23 H 1.08995 * 109.47454 * 149.97602 * 1 2 3
24 24 H 1.08004 * 119.98665 * 0.02562 * 3 2 1
25 25 H 1.08001 * 119.99339 * 180.29570 * 4 3 2
26 26 H 0.97000 * 120.00064 * 243.08105 * 9 6 5
27 27 H 0.97005 * 119.99824 * 180.02562 * 13 12 10
28 28 H 1.08003 * 120.00571 * 0.02562 * 20 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1974 0.0000
4 6 3.5804 1.1980 0.0057
5 6 4.2723 0.0012 -0.0001
6 16 6.0343 0.0021 0.0004
7 8 6.4357 -0.8915 1.0297
8 8 6.4349 1.3647 -0.0458
9 7 6.5253 -0.6783 -1.4273
10 6 6.2201 -0.0708 -2.6160
11 1 5.7314 0.8923 -2.6203
12 6 6.5388 -0.6928 -3.8153
13 7 7.1348 -1.8663 -3.8099
14 14 6.1218 0.1356 -5.4368
15 1 5.4592 1.4378 -5.1714
16 1 7.3682 0.3627 -6.2114
17 1 5.2061 -0.7355 -6.2165
18 6 3.5813 -1.1968 -0.0006
19 35 4.5272 -2.8343 -0.0006
20 6 2.1978 -1.1969 -0.0005
21 1 -0.3633 -0.0004 1.0277
22 1 -0.3634 0.8902 -0.5135
23 1 -0.3634 -0.8897 -0.5142
24 1 1.6579 2.1326 0.0004
25 1 4.1199 2.1336 0.0105
26 1 7.0325 -1.5051 -1.4214
27 1 7.3578 -2.3009 -4.6480
28 1 1.6578 -2.1322 -0.0014
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000040826983.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:59:43
Heat of formation + Delta-G solvation = -46.217483 kcal
Electronic energy + Delta-G solvation = -17149.997604 eV
Core-core repulsion = 14146.322223 eV
Total energy + Delta-G solvation = -3003.675382 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 318.966 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.06271 -35.96128 -34.67902 -34.59291 -33.05400 -31.72035 -30.99097 -29.02807
-27.07239 -24.56717 -22.40480 -21.43590 -18.50992 -18.16703 -17.20425 -16.29995
-15.52045 -14.93131 -14.60450 -14.18342 -14.11430 -13.87391 -13.43997 -13.25895
-12.46411 -12.36341 -11.99439 -11.80196 -11.34995 -11.11192 -11.01036 -10.89825
-10.88007 -10.58086 -10.43396 -10.27686 -10.06698 -9.94892 -9.48524 -8.79903
-8.41546 -8.30400 -6.55729 -3.92464 1.06611 1.41851 1.61480 1.94897
3.14665 3.20225 3.24007 3.62818 4.02732 4.46648 4.75918 4.83393
4.91432 5.10497 5.19564 5.23385 5.48525 5.60781 5.70168 5.84883
5.95333 6.10140 6.24263 6.43702 6.53553 7.00669 7.02804 7.41692
8.62807 8.72850 9.19596 10.58674
Molecular weight = 318.97amu
Principal moments of inertia in cm(-1)
A = 0.013553 B = 0.007841 C = 0.007096
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2065.416977 B = 3569.971284 C = 3945.185605
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.053 4.053
3 C -0.135 4.135
4 C -0.023 4.023
5 C -0.636 4.636
6 S 2.574 3.426
7 O -0.989 6.989
8 O -0.976 6.976
9 N -0.931 5.931
10 C -0.258 4.258
11 H 0.105 0.895
12 C 0.034 3.966
13 N -0.860 5.860
14 Si 0.922 3.078
15 H -0.265 1.265
16 H -0.277 1.277
17 H -0.279 1.279
18 C 0.007 3.993
19 Br -0.028 7.028
20 C -0.119 4.119
21 H 0.073 0.927
22 H 0.069 0.931
23 H 0.069 0.931
24 H 0.128 0.872
25 H 0.143 0.857
26 H 0.413 0.587
27 H 0.276 0.724
28 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.975 -0.031 4.208 11.754
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.054 4.054
3 C -0.154 4.154
4 C -0.043 4.043
5 C -0.715 4.715
6 S 2.665 3.335
7 O -0.977 6.977
8 O -0.966 6.966
9 N -0.682 5.682
10 C -0.402 4.402
11 H 0.123 0.877
12 C -0.176 4.176
13 N -0.502 5.502
14 Si 0.748 3.252
15 H -0.189 1.189
16 H -0.203 1.203
17 H -0.205 1.205
18 C -0.074 4.074
19 Br 0.058 6.942
20 C -0.140 4.140
21 H 0.092 0.908
22 H 0.088 0.912
23 H 0.088 0.912
24 H 0.146 0.854
25 H 0.161 0.839
26 H 0.249 0.751
27 H 0.086 0.914
28 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -10.229 -0.295 4.994 11.387
hybrid contribution -1.055 0.104 -1.160 1.572
sum -11.285 -0.191 3.834 11.920
Atomic orbital electron populations
1.20838 0.90706 1.03115 1.02494 1.20014 0.96060 0.92898 0.96444
1.21219 0.94512 0.97565 1.02077 1.20971 0.94073 0.96978 0.92244
1.32137 1.32671 0.96315 1.10399 1.08576 0.75149 0.74682 0.75109
1.93462 1.81894 1.64447 1.57920 1.93434 1.80754 1.34955 1.87421
1.51903 1.56832 1.39364 1.20088 1.19485 1.36951 1.00774 0.82994
0.87714 1.25341 0.97003 0.95598 0.99665 1.69713 1.37398 1.14437
1.28604 0.85929 0.78581 0.79399 0.81318 1.18938 1.20299 1.20460
1.21359 0.94517 0.91531 1.00025 1.96824 1.74707 1.25622 1.97003
1.21015 0.92203 0.98370 1.02396 0.90850 0.91161 0.91238 0.85399
0.83886 0.75058 0.91398 0.85115
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 27.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.13 10.01 36.01 0.36 -0.77 15
2 C -0.05 -0.75 5.88 -104.63 -0.62 -1.37 15
3 C -0.13 -1.99 9.70 -39.58 -0.38 -2.38 15
4 C -0.02 -0.41 9.55 -39.59 -0.38 -0.79 15
5 C -0.64 -13.07 5.79 -39.56 -0.23 -13.30 15
6 S 2.57 59.66 4.97 -107.50 -0.53 59.13 15
7 O -0.99 -24.02 16.19 -57.17 -0.93 -24.94 15
8 O -0.98 -24.22 16.71 -57.17 -0.96 -25.18 15
9 N -0.93 -22.67 5.25 31.50 0.17 -22.50 15
10 C -0.26 -6.45 9.63 -15.06 -0.14 -6.59 15
11 H 0.11 2.53 7.82 -52.49 -0.41 2.12 15
12 C 0.03 0.83 5.50 -17.43 -0.10 0.74 15
13 N -0.86 -22.07 13.06 55.49 0.72 -21.35 15
14 Si 0.92 19.19 29.55 -169.99 -5.02 14.17 15
15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15
16 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15
17 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15
18 C 0.01 0.13 6.21 -39.52 -0.25 -0.12 15
19 Br -0.03 -0.55 30.60 -68.01 -2.08 -2.63 15
20 C -0.12 -1.92 9.44 -39.56 -0.37 -2.29 15
21 H 0.07 0.63 8.14 -51.93 -0.42 0.20 15
22 H 0.07 0.60 8.09 -51.93 -0.42 0.18 15
23 H 0.07 0.62 8.08 -51.93 -0.42 0.20 15
24 H 0.13 1.45 8.06 -52.48 -0.42 1.03 15
25 H 0.14 2.43 7.34 -52.49 -0.39 2.05 15
26 H 0.41 10.22 8.04 -34.47 -0.28 9.94 15
27 H 0.28 6.63 8.31 -40.82 -0.34 6.29 15
28 H 0.13 1.77 8.06 -52.48 -0.42 1.35 15
LS Contribution 281.30 15.07 4.24 4.24
Total: -1.00 -29.46 281.30 -8.81 -38.27
By element:
Atomic # 1 Polarization: 9.97 SS G_CDS: -2.32 Total: 7.66 kcal
Atomic # 6 Polarization: -24.76 SS G_CDS: -2.11 Total: -26.86 kcal
Atomic # 7 Polarization: -44.74 SS G_CDS: 0.89 Total: -43.85 kcal
Atomic # 8 Polarization: -48.24 SS G_CDS: -1.88 Total: -50.12 kcal
Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal
Atomic # 16 Polarization: 59.66 SS G_CDS: -0.53 Total: 59.13 kcal
Atomic # 35 Polarization: -0.55 SS G_CDS: -2.08 Total: -2.63 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -29.46 -8.81 -38.27 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000040826983.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.951 kcal
(2) G-P(sol) polarization free energy of solvation -29.456 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.406 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.217 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds