Wall clock time and date at job start Tue Mar 31 2020 11:59:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38258 * 119.99679 * 2 1
4 4 C 1.38221 * 120.02061 * 179.72862 * 3 2 1
5 5 C 1.38235 * 120.00849 * 0.54863 * 4 3 2
6 6 S 1.76194 * 120.00627 * 179.74801 * 5 4 3
7 7 O 1.42100 * 106.40339 * 130.68487 * 6 5 4
8 8 O 1.42107 * 106.40217 * 357.76675 * 6 5 4
9 9 N 1.65601 * 107.22067 * 244.22581 * 6 5 4
10 10 C 1.36935 * 119.99988 * 63.35812 * 9 6 5
11 11 H 1.08001 * 119.99725 * 5.06555 * 10 9 6
12 12 C 1.38814 * 120.00044 * 185.06893 * 10 9 6
13 13 N 1.31615 * 119.99672 * 359.97438 * 12 10 9
14 14 Si 1.86798 * 119.99971 * 179.97438 * 12 10 9
15 15 H 1.48500 * 109.47375 * 359.97438 * 14 12 10
16 16 H 1.48494 * 109.47090 * 119.99910 * 14 12 10
17 17 H 1.48502 * 109.46960 * 239.99840 * 14 12 10
18 18 C 1.38310 * 119.98970 * 359.47368 * 5 4 3
19 19 Br 1.89101 * 120.00953 * 180.27576 * 18 5 4
20 20 C 1.38192 * 119.99297 * 180.02562 * 2 1 3
21 21 H 1.09005 * 109.47104 * 269.97726 * 1 2 3
22 22 H 1.09003 * 109.47333 * 29.97683 * 1 2 3
23 23 H 1.08995 * 109.47454 * 149.97602 * 1 2 3
24 24 H 1.08004 * 119.98665 * 0.02562 * 3 2 1
25 25 H 1.08001 * 119.99339 * 180.29570 * 4 3 2
26 26 H 0.97000 * 120.00064 * 243.08105 * 9 6 5
27 27 H 0.97005 * 119.99824 * 180.02562 * 13 12 10
28 28 H 1.08003 * 120.00571 * 0.02562 * 20 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1974 0.0000
4 6 3.5804 1.1980 0.0057
5 6 4.2723 0.0012 -0.0001
6 16 6.0343 0.0021 0.0004
7 8 6.4357 -0.8915 1.0297
8 8 6.4349 1.3647 -0.0458
9 7 6.5253 -0.6783 -1.4273
10 6 6.2201 -0.0708 -2.6160
11 1 5.7314 0.8923 -2.6203
12 6 6.5388 -0.6928 -3.8153
13 7 7.1348 -1.8663 -3.8099
14 14 6.1218 0.1356 -5.4368
15 1 5.4592 1.4378 -5.1714
16 1 7.3682 0.3627 -6.2114
17 1 5.2061 -0.7355 -6.2165
18 6 3.5813 -1.1968 -0.0006
19 35 4.5272 -2.8343 -0.0006
20 6 2.1978 -1.1969 -0.0005
21 1 -0.3633 -0.0004 1.0277
22 1 -0.3634 0.8902 -0.5135
23 1 -0.3634 -0.8897 -0.5142
24 1 1.6579 2.1326 0.0004
25 1 4.1199 2.1336 0.0105
26 1 7.0325 -1.5051 -1.4214
27 1 7.3578 -2.3009 -4.6480
28 1 1.6578 -2.1322 -0.0014
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000040826983.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:59:43
Heat of formation + Delta-G solvation = -66.285471 kcal
Electronic energy + Delta-G solvation = -17150.867818 eV
Core-core repulsion = 14146.322223 eV
Total energy + Delta-G solvation = -3004.545595 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 318.966 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.37252 -37.97775 -36.63175 -36.47087 -34.30918 -33.10187 -32.79871 -30.41015
-28.19408 -26.41938 -23.74644 -22.74998 -20.31156 -20.00074 -18.89308 -18.12655
-17.02988 -16.39301 -16.21728 -15.90279 -15.54482 -15.22813 -14.92067 -14.56821
-13.82263 -13.57904 -13.18782 -13.12373 -13.07864 -12.97902 -12.92129 -12.84564
-12.32676 -12.20615 -12.07646 -11.84523 -11.70621 -11.70207 -11.08743 -10.18792
-10.06254 -9.79761 -8.32126 -5.84850 -0.39655 -0.16548 0.10482 0.47744
1.48909 1.50702 1.61714 2.22744 2.36706 2.67450 2.92607 3.24132
3.54428 3.78453 3.87548 4.11569 4.31093 4.43496 4.59386 4.80416
4.83282 4.92996 5.04071 5.12585 5.20011 5.36465 5.61624 5.77407
6.76454 6.95242 7.34634 8.85207
Molecular weight = 318.97amu
Principal moments of inertia in cm(-1)
A = 0.013553 B = 0.007841 C = 0.007096
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2065.416977 B = 3569.971284 C = 3945.185605
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.034 4.034
3 C -0.126 4.126
4 C -0.034 4.034
5 C -0.667 4.667
6 S 2.630 3.370
7 O -1.000 7.000
8 O -0.996 6.996
9 N -0.956 5.956
10 C -0.300 4.300
11 H 0.104 0.896
12 C -0.008 4.008
13 N -0.911 5.911
14 Si 0.979 3.021
15 H -0.258 1.258
16 H -0.278 1.278
17 H -0.276 1.276
18 C -0.013 4.013
19 Br -0.043 7.043
20 C -0.123 4.123
21 H 0.095 0.905
22 H 0.091 0.909
23 H 0.081 0.919
24 H 0.172 0.828
25 H 0.147 0.853
26 H 0.408 0.592
27 H 0.274 0.726
28 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.590 1.286 4.953 15.461
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.035 4.035
3 C -0.145 4.145
4 C -0.054 4.054
5 C -0.754 4.754
6 S 2.723 3.277
7 O -0.989 6.989
8 O -0.987 6.987
9 N -0.709 5.709
10 C -0.437 4.437
11 H 0.121 0.879
12 C -0.212 4.212
13 N -0.553 5.553
14 Si 0.803 3.197
15 H -0.181 1.181
16 H -0.204 1.204
17 H -0.202 1.202
18 C -0.094 4.094
19 Br 0.044 6.956
20 C -0.143 4.143
21 H 0.114 0.886
22 H 0.110 0.890
23 H 0.100 0.900
24 H 0.190 0.810
25 H 0.165 0.835
26 H 0.243 0.757
27 H 0.083 0.917
28 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -13.771 1.026 5.634 14.914
hybrid contribution -0.214 -0.189 -0.991 1.031
sum -13.985 0.837 4.642 14.759
Atomic orbital electron populations
1.20994 0.86789 1.04914 1.04358 1.20647 0.98687 0.91684 0.92498
1.21693 0.93035 0.99871 0.99910 1.21212 0.96030 0.95921 0.92245
1.31270 1.29517 0.98563 1.16017 1.04865 0.75592 0.73566 0.73684
1.93475 1.82787 1.65021 1.57618 1.93428 1.81825 1.35897 1.87538
1.51363 1.60982 1.38811 1.19701 1.19504 1.38792 1.01902 0.83517
0.87877 1.25986 0.96935 0.96167 1.02139 1.69805 1.40603 1.16034
1.28859 0.85073 0.78180 0.78693 0.77775 1.18150 1.20386 1.20194
1.21555 0.96079 0.90399 1.01355 1.96814 1.75336 1.26379 1.97105
1.21421 0.90788 1.00642 1.01455 0.88640 0.89009 0.89963 0.81024
0.83510 0.75691 0.91676 0.82577
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 34.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.52 10.01 71.24 0.71 -0.80 15
2 C -0.03 -0.79 5.88 -19.87 -0.12 -0.91 15
3 C -0.13 -3.14 9.70 22.27 0.22 -2.92 15
4 C -0.03 -1.14 9.55 22.26 0.21 -0.93 15
5 C -0.67 -26.76 5.79 22.29 0.13 -26.63 15
6 S 2.63 123.23 4.97 -56.49 -0.28 122.95 15
7 O -1.00 -49.00 16.19 -128.00 -2.07 -51.07 15
8 O -1.00 -49.80 16.71 -128.00 -2.14 -51.94 15
9 N -0.96 -48.34 5.25 -54.27 -0.28 -48.63 15
10 C -0.30 -15.53 9.63 84.03 0.81 -14.72 15
11 H 0.10 5.15 7.82 -2.91 -0.02 5.12 15
12 C -0.01 -0.44 5.50 84.86 0.47 0.03 15
13 N -0.91 -49.17 13.06 21.65 0.28 -48.88 15
14 Si 0.98 40.41 29.55 68.60 2.03 42.43 15
15 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15
16 H -0.28 -11.35 7.11 99.48 0.71 -10.64 15
17 H -0.28 -11.12 7.11 99.48 0.71 -10.42 15
18 C -0.01 -0.48 6.21 22.31 0.14 -0.34 15
19 Br -0.04 -1.67 30.60 -20.37 -0.62 -2.29 15
20 C -0.12 -3.53 9.44 22.28 0.21 -3.32 15
21 H 0.10 0.98 8.14 -2.38 -0.02 0.96 15
22 H 0.09 0.92 8.09 -2.39 -0.02 0.90 15
23 H 0.08 0.97 8.08 -2.39 -0.02 0.95 15
24 H 0.17 2.79 8.06 -2.91 -0.02 2.76 15
25 H 0.15 4.72 7.34 -2.91 -0.02 4.70 15
26 H 0.41 21.30 8.04 -96.74 -0.78 20.53 15
27 H 0.27 13.89 8.31 -92.70 -0.77 13.12 15
28 H 0.16 3.64 8.06 -2.91 -0.02 3.61 15
Total: -1.00 -65.89 281.30 0.11 -65.78
By element:
Atomic # 1 Polarization: 21.78 SS G_CDS: 0.42 Total: 22.20 kcal
Atomic # 6 Polarization: -53.32 SS G_CDS: 2.78 Total: -50.54 kcal
Atomic # 7 Polarization: -97.51 SS G_CDS: 0.00 Total: -97.51 kcal
Atomic # 8 Polarization: -98.80 SS G_CDS: -4.21 Total: -103.02 kcal
Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.43 kcal
Atomic # 16 Polarization: 123.23 SS G_CDS: -0.28 Total: 122.95 kcal
Atomic # 35 Polarization: -1.67 SS G_CDS: -0.62 Total: -2.29 kcal
Total: -65.89 0.11 -65.78 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000040826983.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.510 kcal
(2) G-P(sol) polarization free energy of solvation -65.888 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.398 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.775 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.285 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds