Wall clock time and date at job start Tue Mar 31 2020 12:34:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86801 * 120.00030 * 2 1
4 4 H 1.48500 * 109.46947 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47168 * 300.00040 * 3 2 1
6 6 H 1.48498 * 109.46833 * 59.99953 * 3 2 1
7 7 C 1.38801 * 120.00239 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00192 * 180.02562 * 7 2 1
9 9 S 1.76204 * 119.99914 * 0.02562 * 7 2 1
10 10 C 1.80994 * 100.00163 * 179.97438 * 9 7 2
11 11 C 1.50701 * 109.47114 * 179.97438 * 10 9 7
12 12 O 1.21294 * 119.99900 * 359.97438 * 11 10 9
13 13 N 1.34784 * 119.99880 * 180.02562 * 11 10 9
14 14 C 1.40136 * 119.99798 * 185.53000 * 13 11 10
15 15 C 1.38653 * 120.10109 * 24.80895 * 14 13 11
16 16 C 1.38248 * 120.00528 * 180.02562 * 15 14 13
17 17 C 1.38292 * 120.21279 * 359.97438 * 16 15 14
18 18 C 1.38196 * 120.20058 * 0.02562 * 17 16 15
19 19 C 1.38783 * 119.98852 * 0.02562 * 18 17 16
20 20 S 1.76201 * 120.10331 * 180.02562 * 19 18 17
21 21 C 1.81398 * 103.00166 * 359.95609 * 20 19 18
22 22 F 1.39897 * 109.47469 * 300.00426 * 21 20 19
23 23 F 1.39905 * 109.47007 * 60.00008 * 21 20 19
24 24 H 0.96995 * 120.00089 * 0.02562 * 1 2 3
25 25 H 1.09000 * 109.47081 * 59.99967 * 10 9 7
26 26 H 1.08998 * 109.47490 * 300.00323 * 10 9 7
27 27 H 0.97001 * 119.99995 * 5.52468 * 13 11 10
28 28 H 1.07993 * 119.99399 * 0.02562 * 15 14 13
29 29 H 1.08003 * 119.89200 * 180.02562 * 16 15 14
30 30 H 1.08001 * 119.89776 * 179.74607 * 17 16 15
31 31 H 1.08001 * 120.00440 * 180.02562 * 18 17 16
32 32 H 1.09005 * 109.47208 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7103 1.3463 0.0006
5 1 1.8915 2.3964 -1.2124
6 1 1.8915 2.3964 1.2125
7 6 2.0103 -1.2020 0.0005
8 1 3.0903 -1.2020 0.0010
9 16 1.1293 -2.7280 0.0005
10 6 2.5158 -3.8914 0.0005
11 6 1.9874 -5.3027 0.0012
12 8 0.7909 -5.5023 0.0021
13 7 2.8442 -6.3432 0.0018
14 6 2.3571 -7.6520 -0.1146
15 6 1.1352 -7.8875 -0.7261
16 6 0.6563 -9.1794 -0.8393
17 6 1.3927 -10.2404 -0.3447
18 6 2.6116 -10.0156 0.2664
19 6 3.0998 -8.7219 0.3855
20 16 4.6539 -8.4320 1.1635
21 6 5.1984 -10.1004 1.6220
22 9 4.2622 -10.6750 2.4884
23 9 5.3120 -10.8868 0.4704
24 1 -0.4850 0.8400 -0.0004
25 1 3.1244 -3.7313 0.8905
26 1 3.1245 -3.7314 -0.8894
27 1 3.7979 -6.1860 0.0827
28 1 0.5575 -7.0615 -1.1139
29 1 -0.2955 -9.3607 -1.3164
30 1 1.0118 -11.2472 -0.4323
31 1 3.1842 -10.8466 0.6512
32 1 6.1668 -10.0429 2.1192
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000047903604.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:34:41
Heat of formation + Delta-G solvation = -93.582396 kcal
Electronic energy + Delta-G solvation = -20992.092329 eV
Core-core repulsion = 17227.580022 eV
Total energy + Delta-G solvation = -3764.512307 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 319.025 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-49.74928 -47.73757 -40.46386 -38.34080 -34.76431 -32.48514 -31.28545 -30.69615
-28.37277 -27.45434 -25.54757 -23.39532 -22.89401 -20.47337 -19.29192 -18.37179
-17.96717 -17.93119 -17.29195 -16.94220 -16.56678 -15.47736 -15.05217 -14.85053
-14.63445 -14.60071 -14.43989 -14.06289 -14.02234 -13.51594 -13.41414 -13.32494
-12.80442 -12.65068 -12.24988 -12.00849 -11.29632 -11.10642 -11.07338 -10.84781
-10.79575 -10.54133 -10.19492 -9.87970 -9.53173 -9.12575 -8.48590 -8.33724
-7.82228 -6.58182 -6.27428 -3.99132 0.31581 0.95934 1.20851 1.46229
2.78427 2.79420 3.18803 3.23315 3.24315 3.28437 3.51403 3.61705
3.83864 3.91736 4.14146 4.60067 4.79140 4.91981 5.08350 5.12172
5.29688 5.33263 5.50550 5.70501 5.73658 5.98694 6.03702 6.08740
6.31826 6.43790 6.85653 7.33137 7.55025 8.24220 8.30062 9.18314
10.80061
Molecular weight = 319.03amu
Principal moments of inertia in cm(-1)
A = 0.024398 B = 0.002849 C = 0.002613
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1147.364570 B = 9825.542168 C =10712.195769
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.867 5.867
2 C 0.074 3.926
3 Si 0.920 3.080
4 H -0.271 1.271
5 H -0.279 1.279
6 H -0.279 1.279
7 C -0.537 4.537
8 H 0.075 0.925
9 S -0.055 6.055
10 C -0.155 4.155
11 C 0.534 3.466
12 O -0.490 6.490
13 N -0.675 5.675
14 C 0.195 3.805
15 C -0.120 4.120
16 C -0.088 4.088
17 C -0.129 4.129
18 C -0.101 4.101
19 C -0.137 4.137
20 S -0.101 6.101
21 C 0.276 3.724
22 F -0.179 7.179
23 F -0.181 7.181
24 H 0.269 0.731
25 H 0.095 0.905
26 H 0.096 0.904
27 H 0.410 0.590
28 H 0.158 0.842
29 H 0.131 0.869
30 H 0.127 0.873
31 H 0.127 0.873
32 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.002 -21.928 1.184 24.562
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.502 5.502
2 C -0.135 4.135
3 Si 0.746 3.254
4 H -0.196 1.196
5 H -0.205 1.205
6 H -0.205 1.205
7 C -0.685 4.685
8 H 0.093 0.907
9 S 0.172 5.828
10 C -0.305 4.305
11 C 0.322 3.678
12 O -0.362 6.362
13 N -0.321 5.321
14 C 0.093 3.907
15 C -0.142 4.142
16 C -0.108 4.108
17 C -0.149 4.149
18 C -0.124 4.124
19 C -0.252 4.252
20 S 0.134 5.866
21 C 0.113 3.887
22 F -0.161 7.161
23 F -0.163 7.163
24 H 0.079 0.921
25 H 0.113 0.887
26 H 0.115 0.885
27 H 0.246 0.754
28 H 0.175 0.825
29 H 0.149 0.851
30 H 0.145 0.855
31 H 0.145 0.855
32 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 9.512 -21.094 1.421 23.183
hybrid contribution 1.774 0.065 -0.130 1.780
sum 11.286 -21.029 1.292 23.901
Atomic orbital electron populations
1.70015 1.05969 1.27484 1.46728 1.24998 0.95045 0.99095 0.94403
0.86094 0.79590 0.81743 0.77945 1.19564 1.20523 1.20523 1.22895
0.94987 0.91432 1.59166 0.90723 1.85406 1.04286 0.96379 1.96769
1.23565 1.07160 0.94265 1.05537 1.20594 0.86388 0.86239 0.74546
1.90677 1.15169 1.85048 1.45289 1.43848 1.11145 1.03799 1.73319
1.17310 0.94412 0.82756 0.96185 1.21525 0.95179 0.98664 0.98823
1.21216 0.99619 0.91851 0.98129 1.20984 0.94484 0.99404 1.00043
1.21100 0.97358 0.93916 1.00004 1.21071 0.99047 0.96405 1.08668
1.86114 1.19836 1.07825 1.72791 1.24285 0.95421 0.89058 0.79966
1.93123 1.67544 1.86010 1.69416 1.93119 1.96497 1.76380 1.50263
0.92146 0.88658 0.88547 0.75380 0.82477 0.85063 0.85475 0.85520
0.82581
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -25.67 13.22 55.49 0.73 -24.93 16
2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16
3 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16
4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16
5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16
6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
7 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16
8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16
9 S -0.05 -1.44 20.57 -107.50 -2.21 -3.65 16
10 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16
11 C 0.53 9.72 7.65 -10.98 -0.08 9.64 16
12 O -0.49 -10.43 13.04 5.54 0.07 -10.36 16
13 N -0.68 -9.81 5.17 -9.71 -0.05 -9.86 16
14 C 0.19 2.81 6.44 -83.43 -0.54 2.27 16
15 C -0.12 -1.76 8.72 -39.42 -0.34 -2.10 16
16 C -0.09 -1.04 10.04 -39.56 -0.40 -1.43 16
17 C -0.13 -1.39 10.04 -39.58 -0.40 -1.79 16
18 C -0.10 -1.17 8.68 -39.40 -0.34 -1.51 16
19 C -0.14 -1.73 6.12 -38.90 -0.24 -1.97 16
20 S -0.10 -1.00 20.88 -107.50 -2.24 -3.24 16
21 C 0.28 2.02 5.37 101.05 0.54 2.56 16
22 F -0.18 -1.63 15.65 2.25 0.04 -1.60 16
23 F -0.18 -1.56 15.64 2.25 0.04 -1.52 16
24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16
25 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16
26 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16
27 H 0.41 4.90 7.65 -40.82 -0.31 4.59 16
28 H 0.16 2.59 5.79 -52.49 -0.30 2.28 16
29 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16
30 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16
31 H 0.13 1.33 4.55 -52.49 -0.24 1.09 16
32 H 0.16 0.50 8.14 -51.92 -0.42 0.08 16
LS Contribution 313.90 15.07 4.73 4.73
Total: -1.00 -33.16 313.90 -7.81 -40.97
By element:
Atomic # 1 Polarization: 5.72 SS G_CDS: -2.51 Total: 3.21 kcal
Atomic # 6 Polarization: -8.38 SS G_CDS: -1.38 Total: -9.75 kcal
Atomic # 7 Polarization: -35.48 SS G_CDS: 0.68 Total: -34.79 kcal
Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal
Atomic # 9 Polarization: -3.19 SS G_CDS: 0.07 Total: -3.12 kcal
Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal
Atomic # 16 Polarization: -2.44 SS G_CDS: -4.46 Total: -6.90 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -33.16 -7.81 -40.97 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000047903604.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.614 kcal
(2) G-P(sol) polarization free energy of solvation -33.157 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.770 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.582 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds