Wall clock time and date at job start Tue Mar 31 2020 12:34:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86801 * 120.00030 * 2 1
4 4 H 1.48500 * 109.46947 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47168 * 300.00040 * 3 2 1
6 6 H 1.48498 * 109.46833 * 59.99953 * 3 2 1
7 7 C 1.38801 * 120.00239 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00192 * 180.02562 * 7 2 1
9 9 S 1.76204 * 119.99914 * 0.02562 * 7 2 1
10 10 C 1.80994 * 100.00163 * 179.97438 * 9 7 2
11 11 C 1.50701 * 109.47114 * 179.97438 * 10 9 7
12 12 O 1.21294 * 119.99900 * 359.97438 * 11 10 9
13 13 N 1.34784 * 119.99880 * 180.02562 * 11 10 9
14 14 C 1.40136 * 119.99798 * 185.53000 * 13 11 10
15 15 C 1.38653 * 120.10109 * 24.80895 * 14 13 11
16 16 C 1.38248 * 120.00528 * 180.02562 * 15 14 13
17 17 C 1.38292 * 120.21279 * 359.97438 * 16 15 14
18 18 C 1.38196 * 120.20058 * 0.02562 * 17 16 15
19 19 C 1.38783 * 119.98852 * 0.02562 * 18 17 16
20 20 S 1.76201 * 120.10331 * 180.02562 * 19 18 17
21 21 C 1.81398 * 103.00166 * 359.95609 * 20 19 18
22 22 F 1.39897 * 109.47469 * 300.00426 * 21 20 19
23 23 F 1.39905 * 109.47007 * 60.00008 * 21 20 19
24 24 H 0.96995 * 120.00089 * 0.02562 * 1 2 3
25 25 H 1.09000 * 109.47081 * 59.99967 * 10 9 7
26 26 H 1.08998 * 109.47490 * 300.00323 * 10 9 7
27 27 H 0.97001 * 119.99995 * 5.52468 * 13 11 10
28 28 H 1.07993 * 119.99399 * 0.02562 * 15 14 13
29 29 H 1.08003 * 119.89200 * 180.02562 * 16 15 14
30 30 H 1.08001 * 119.89776 * 179.74607 * 17 16 15
31 31 H 1.08001 * 120.00440 * 180.02562 * 18 17 16
32 32 H 1.09005 * 109.47208 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7103 1.3463 0.0006
5 1 1.8915 2.3964 -1.2124
6 1 1.8915 2.3964 1.2125
7 6 2.0103 -1.2020 0.0005
8 1 3.0903 -1.2020 0.0010
9 16 1.1293 -2.7280 0.0005
10 6 2.5158 -3.8914 0.0005
11 6 1.9874 -5.3027 0.0012
12 8 0.7909 -5.5023 0.0021
13 7 2.8442 -6.3432 0.0018
14 6 2.3571 -7.6520 -0.1146
15 6 1.1352 -7.8875 -0.7261
16 6 0.6563 -9.1794 -0.8393
17 6 1.3927 -10.2404 -0.3447
18 6 2.6116 -10.0156 0.2664
19 6 3.0998 -8.7219 0.3855
20 16 4.6539 -8.4320 1.1635
21 6 5.1984 -10.1004 1.6220
22 9 4.2622 -10.6750 2.4884
23 9 5.3120 -10.8868 0.4704
24 1 -0.4850 0.8400 -0.0004
25 1 3.1244 -3.7313 0.8905
26 1 3.1245 -3.7314 -0.8894
27 1 3.7979 -6.1860 0.0827
28 1 0.5575 -7.0615 -1.1139
29 1 -0.2955 -9.3607 -1.3164
30 1 1.0118 -11.2472 -0.4323
31 1 3.1842 -10.8466 0.6512
32 1 6.1668 -10.0429 2.1192
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000047903604.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:34:41
Heat of formation + Delta-G solvation = -114.262753 kcal
Electronic energy + Delta-G solvation = -20992.989097 eV
Core-core repulsion = 17227.580022 eV
Total energy + Delta-G solvation = -3765.409075 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 319.025 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-50.38386 -48.37916 -41.69600 -39.50079 -36.01477 -34.59698 -32.25427 -32.01019
-29.66244 -28.04469 -27.67136 -24.44288 -23.91013 -21.78255 -20.23391 -19.73647
-19.04904 -18.56282 -18.29490 -18.09815 -17.74179 -16.89026 -16.81792 -16.27421
-15.72235 -15.69677 -15.29682 -15.23198 -14.93329 -14.70902 -14.55902 -14.43332
-14.24596 -13.65112 -13.54684 -13.19257 -12.96822 -12.91624 -12.62172 -12.16911
-11.76338 -11.70651 -11.51555 -11.16725 -11.13432 -10.92216 -10.32331 -9.50625
-8.74834 -8.67377 -8.36221 -6.14538 -0.35248 -0.02231 0.19045 0.61597
1.18522 1.41347 1.42478 1.43838 1.56531 2.00275 2.25019 2.62295
2.73112 2.98666 3.22733 3.31823 3.38819 3.62549 3.71635 4.01697
4.19953 4.21617 4.31650 4.36053 4.44357 4.71003 4.96756 5.14802
5.29614 5.41897 5.45300 5.83888 6.14568 6.19260 6.89837 7.05725
8.73155
Molecular weight = 319.03amu
Principal moments of inertia in cm(-1)
A = 0.024398 B = 0.002849 C = 0.002613
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1147.364570 B = 9825.542168 C =10712.195769
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.015 3.985
3 Si 0.999 3.001
4 H -0.256 1.256
5 H -0.274 1.274
6 H -0.274 1.274
7 C -0.547 4.547
8 H 0.085 0.915
9 S -0.139 6.139
10 C -0.131 4.131
11 C 0.538 3.462
12 O -0.529 6.529
13 N -0.657 5.657
14 C 0.165 3.835
15 C -0.142 4.142
16 C -0.091 4.091
17 C -0.118 4.118
18 C -0.107 4.107
19 C -0.140 4.140
20 S -0.109 6.109
21 C 0.281 3.719
22 F -0.188 7.188
23 F -0.186 7.186
24 H 0.272 0.728
25 H 0.115 0.885
26 H 0.117 0.883
27 H 0.422 0.578
28 H 0.131 0.869
29 H 0.153 0.847
30 H 0.161 0.839
31 H 0.141 0.859
32 H 0.207 0.793
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.554 -23.375 1.634 27.070
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.190 4.190
3 Si 0.821 3.179
4 H -0.180 1.180
5 H -0.200 1.200
6 H -0.200 1.200
7 C -0.695 4.695
8 H 0.103 0.897
9 S 0.088 5.912
10 C -0.282 4.282
11 C 0.326 3.674
12 O -0.404 6.404
13 N -0.303 5.303
14 C 0.064 3.936
15 C -0.164 4.164
16 C -0.111 4.111
17 C -0.138 4.138
18 C -0.130 4.130
19 C -0.255 4.255
20 S 0.127 5.873
21 C 0.118 3.882
22 F -0.170 7.170
23 F -0.168 7.168
24 H 0.081 0.919
25 H 0.134 0.866
26 H 0.135 0.865
27 H 0.261 0.739
28 H 0.148 0.852
29 H 0.170 0.830
30 H 0.178 0.822
31 H 0.159 0.841
32 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges 12.107 -22.582 1.870 25.691
hybrid contribution 1.035 0.282 -0.260 1.104
sum 13.142 -22.301 1.610 25.935
Atomic orbital electron populations
1.70174 1.07948 1.28620 1.47955 1.26113 0.95958 1.03289 0.93680
0.84902 0.78652 0.76331 0.78049 1.17983 1.19965 1.19984 1.23242
0.95451 0.91860 1.58929 0.89738 1.85556 1.09612 0.98994 1.97077
1.23377 1.04241 0.93108 1.07440 1.20311 0.86122 0.86492 0.74484
1.90676 1.16789 1.85480 1.47448 1.43469 1.11238 1.03348 1.72272
1.17435 0.95207 0.82798 0.98114 1.21473 0.95620 0.99246 1.00026
1.21466 1.00582 0.90985 0.98064 1.21389 0.93763 1.00568 0.98093
1.21403 0.97844 0.93878 0.99894 1.21276 1.00124 0.96168 1.07925
1.86070 1.18014 1.10929 1.72259 1.24749 0.96735 0.86980 0.79703
1.93107 1.68271 1.85960 1.69628 1.93108 1.96491 1.76325 1.50856
0.91946 0.86645 0.86522 0.73909 0.85174 0.82975 0.82155 0.84107
0.77687
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -55.21 13.22 21.65 0.29 -54.93 16
2 C 0.01 0.81 5.49 84.86 0.47 1.28 16
3 Si 1.00 43.03 29.55 68.60 2.03 45.06 16
4 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16
5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16
6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16
7 C -0.55 -30.67 9.50 67.95 0.65 -30.03 16
8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16
9 S -0.14 -7.56 20.57 -56.49 -1.16 -8.72 16
10 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16
11 C 0.54 19.99 7.65 87.66 0.67 20.66 16
12 O -0.53 -23.65 13.04 -3.07 -0.04 -23.69 16
13 N -0.66 -19.02 5.17 -303.00 -1.57 -20.59 16
14 C 0.16 4.75 6.44 38.22 0.25 5.00 16
15 C -0.14 -4.26 8.72 22.37 0.20 -4.06 16
16 C -0.09 -2.07 10.04 22.29 0.22 -1.85 16
17 C -0.12 -2.28 10.04 22.27 0.22 -2.05 16
18 C -0.11 -2.26 8.68 22.39 0.19 -2.06 16
19 C -0.14 -3.36 6.12 22.71 0.14 -3.22 16
20 S -0.11 -1.92 20.88 -56.49 -1.18 -3.09 16
21 C 0.28 3.20 5.37 113.37 0.61 3.81 16
22 F -0.19 -2.88 15.65 44.97 0.70 -2.18 16
23 F -0.19 -2.64 15.64 44.97 0.70 -1.93 16
24 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16
25 H 0.12 4.01 8.14 -2.40 -0.02 3.99 16
26 H 0.12 4.04 8.14 -2.40 -0.02 4.02 16
27 H 0.42 9.73 7.65 -92.71 -0.71 9.02 16
28 H 0.13 4.61 5.79 -2.91 -0.02 4.59 16
29 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16
30 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16
31 H 0.14 2.55 4.55 -2.91 -0.01 2.53 16
32 H 0.21 0.38 8.14 -2.39 -0.02 0.36 16
Total: -1.00 -74.70 313.90 4.31 -70.39
By element:
Atomic # 1 Polarization: 16.37 SS G_CDS: 0.48 Total: 16.85 kcal
Atomic # 6 Polarization: -21.21 SS G_CDS: 4.05 Total: -17.16 kcal
Atomic # 7 Polarization: -74.24 SS G_CDS: -1.28 Total: -75.52 kcal
Atomic # 8 Polarization: -23.65 SS G_CDS: -0.04 Total: -23.69 kcal
Atomic # 9 Polarization: -5.52 SS G_CDS: 1.41 Total: -4.11 kcal
Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal
Atomic # 16 Polarization: -9.48 SS G_CDS: -2.34 Total: -11.82 kcal
Total: -74.70 4.31 -70.39 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000047903604.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.871 kcal
(2) G-P(sol) polarization free energy of solvation -74.699 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.570 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.392 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.263 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds