Wall clock time and date at job start Tue Mar 31 2020 12:46:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53000 * 109.46900 * 2 1
4 4 H 1.09003 * 109.47250 * 55.26751 * 3 2 1
5 5 C 1.50703 * 109.47177 * 175.26157 * 3 2 1
6 6 H 1.08001 * 119.99767 * 120.00149 * 5 3 2
7 7 C 1.37880 * 120.00041 * 300.00092 * 5 3 2
8 8 N 1.31515 * 119.99933 * 0.02562 * 7 5 3
9 9 Si 1.86792 * 120.00022 * 179.97438 * 7 5 3
10 10 H 1.48505 * 109.47049 * 60.00381 * 9 7 5
11 11 H 1.48501 * 109.47251 * 180.02562 * 9 7 5
12 12 H 1.48504 * 109.47195 * 300.00536 * 9 7 5
13 13 N 1.46495 * 109.47524 * 295.26384 * 3 2 1
14 14 S 1.65604 * 120.00147 * 144.23227 * 13 3 2
15 15 O 1.42096 * 106.40436 * 177.37893 * 14 13 3
16 16 O 1.42102 * 106.40121 * 310.29848 * 14 13 3
17 17 C 1.76195 * 107.21975 * 63.83665 * 14 13 3
18 18 C 1.32737 * 124.69921 * 89.99920 * 17 14 13
19 19 C 1.44473 * 113.08971 * 179.97438 * 18 17 14
20 20 C 1.47023 * 123.47593 * 180.02562 * 19 18 17
21 21 O 1.21565 * 120.00340 * 359.97438 * 20 19 18
22 22 O 1.34806 * 120.00100 * 179.97438 * 20 19 18
23 23 C 1.36107 * 113.04936 * 359.97438 * 19 18 17
24 24 S 1.70453 * 110.80288 * 359.76781 * 23 19 18
25 25 H 1.08994 * 109.47501 * 295.25993 * 1 2 3
26 26 H 1.09003 * 109.46837 * 55.26499 * 1 2 3
27 27 H 1.09000 * 109.46862 * 175.26110 * 1 2 3
28 28 H 1.09000 * 109.47384 * 240.00316 * 2 1 3
29 29 H 1.08995 * 109.47242 * 120.00258 * 2 1 3
30 30 H 0.96999 * 119.99926 * 180.02562 * 8 7 5
31 31 H 0.97001 * 120.00219 * 324.50670 * 13 3 2
32 32 H 1.07996 * 123.46031 * 359.97438 * 18 17 14
33 33 H 0.96696 * 117.00157 * 179.97438 * 22 20 19
34 34 H 1.07996 * 124.59720 * 180.02562 * 23 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6090 1.9803 0.8446
5 6 3.5424 1.4442 0.1174
6 1 4.1443 1.8900 -0.6607
7 6 4.1486 0.8766 1.2181
8 7 3.4156 0.3333 2.1653
9 14 6.0109 0.8781 1.3632
10 1 6.5063 2.2781 1.3629
11 1 6.4093 0.2118 2.6291
12 1 6.5976 0.1452 0.2126
13 7 1.6470 2.0995 -1.2490
14 16 1.2319 3.7026 -1.2464
15 8 0.9661 4.0505 -2.5982
16 8 0.2851 3.8703 -0.2002
17 6 2.6645 4.6116 -0.7712
18 6 3.5763 5.0801 -1.6145
19 6 4.6474 5.7897 -0.9539
20 6 5.7765 6.4023 -1.6691
21 8 5.8425 6.3252 -2.8805
22 8 6.7387 7.0493 -0.9815
23 6 4.5029 5.8337 0.3988
24 16 3.0794 5.0301 0.8819
25 1 -0.3634 0.4385 0.9293
26 1 -0.3633 0.5856 -0.8446
27 1 -0.3633 -1.0242 -0.0849
28 1 1.8934 -0.5138 -0.8900
29 1 1.8934 -0.5138 0.8899
30 1 3.8420 -0.0656 2.9398
31 1 1.6261 1.5945 -2.0770
32 1 3.5230 4.9448 -2.6846
33 1 7.4612 7.4355 -1.4953
34 1 5.1940 6.3161 1.0740
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000054176914.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:46:39
Heat of formation + Delta-G solvation = -142.736737 kcal
Electronic energy + Delta-G solvation = -23015.242197 eV
Core-core repulsion = 19359.685913 eV
Total energy + Delta-G solvation = -3655.556284 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 319.043 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.15565 -37.17460 -36.70032 -36.01119 -35.96654 -35.39725 -32.30731 -30.67239
-30.23800 -26.72828 -25.51621 -23.11224 -23.03303 -20.28014 -19.79111 -19.04434
-18.18181 -18.00391 -16.93989 -16.63603 -16.45248 -15.62376 -15.53692 -15.11395
-14.72363 -13.97866 -13.65596 -13.17797 -13.11404 -13.03085 -12.92168 -12.70295
-11.92616 -11.73071 -11.63981 -11.60250 -11.56686 -11.26389 -11.24904 -11.15165
-11.02428 -10.87635 -10.42229 -10.34743 -9.90759 -9.89729 -9.74940 -9.33520
-8.56143 -8.37010 -8.33032 -6.20243 -4.29655 0.52997 0.95543 1.53773
1.58202 1.92174 3.04422 3.08460 3.17204 3.23830 3.27056 3.64433
4.20840 4.27114 4.80607 5.02765 5.09281 5.20519 5.42160 5.68711
5.79238 6.10756 6.18046 6.21631 6.33138 6.39733 6.50478 6.80152
6.96878 7.10951 7.50408 7.57141 7.78980 7.86814 7.95849 8.13932
8.74399 9.37882 10.83372
Molecular weight = 319.04amu
Principal moments of inertia in cm(-1)
A = 0.011606 B = 0.007078 C = 0.005115
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2411.874885 B = 3955.041742 C = 5472.401108
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.121 4.121
3 C 0.272 3.728
4 H 0.052 0.948
5 C -0.536 4.536
6 H 0.062 0.938
7 C 0.073 3.927
8 N -0.883 5.883
9 Si 0.885 3.115
10 H -0.276 1.276
11 H -0.285 1.285
12 H -0.276 1.276
13 N -1.096 6.096
14 S 2.718 3.282
15 O -0.975 6.975
16 O -0.958 6.958
17 C -0.790 4.790
18 C 0.048 3.952
19 C -0.183 4.183
20 C 0.551 3.449
21 O -0.516 6.516
22 O -0.515 6.515
23 C -0.174 4.174
24 S 0.372 5.628
25 H 0.048 0.952
26 H 0.039 0.961
27 H 0.035 0.965
28 H 0.040 0.960
29 H 0.106 0.894
30 H 0.266 0.734
31 H 0.409 0.591
32 H 0.164 0.836
33 H 0.412 0.588
34 H 0.182 0.818
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.673 8.538 -1.473 8.824
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.161 4.161
3 C 0.168 3.832
4 H 0.070 0.930
5 C -0.575 4.575
6 H 0.080 0.920
7 C -0.131 4.131
8 N -0.520 5.520
9 Si 0.713 3.287
10 H -0.202 1.202
11 H -0.211 1.211
12 H -0.201 1.201
13 N -0.858 5.858
14 S 2.802 3.198
15 O -0.965 6.965
16 O -0.948 6.948
17 C -0.989 4.989
18 C 0.016 3.984
19 C -0.201 4.201
20 C 0.394 3.606
21 O -0.406 6.406
22 O -0.326 6.326
23 C -0.314 4.314
24 S 0.641 5.359
25 H 0.067 0.933
26 H 0.058 0.942
27 H 0.054 0.946
28 H 0.059 0.941
29 H 0.124 0.876
30 H 0.076 0.924
31 H 0.243 0.757
32 H 0.182 0.818
33 H 0.271 0.729
34 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -0.112 8.447 0.053 8.448
hybrid contribution 3.340 0.277 -1.737 3.775
sum 3.227 8.724 -1.685 9.453
Atomic orbital electron populations
1.21847 0.98766 0.99362 1.00803 1.21806 0.92224 0.98840 1.03256
1.18703 0.94316 0.90957 0.79195 0.93022 1.21517 0.91314 1.38828
1.05873 0.91982 1.24827 0.97913 0.94809 0.95534 1.69830 1.35104
1.37616 1.09483 0.86758 0.85874 0.78499 0.77595 1.20170 1.21056
1.20133 1.55478 1.85724 1.25898 1.18652 1.01164 0.72769 0.72870
0.73026 1.93540 1.83987 1.83784 1.35165 1.93579 1.56764 1.86078
1.58403 1.35869 1.29208 1.27211 1.06592 1.20669 0.87964 0.89116
1.00643 1.19326 0.97960 1.10468 0.92312 1.20095 0.80846 0.74721
0.84984 1.90905 1.76982 1.57689 1.15055 1.84571 1.35585 1.67266
1.45224 1.26414 1.04202 1.01422 0.99392 1.83170 1.10375 1.41037
1.01280 0.93289 0.94229 0.94566 0.94098 0.87566 0.92420 0.75746
0.81822 0.72946 0.80073
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.78 9.85 37.16 0.37 -2.42 16
2 C -0.12 -2.55 5.37 -26.73 -0.14 -2.69 16
3 C 0.27 5.93 2.27 -69.08 -0.16 5.77 16
4 H 0.05 1.23 7.54 -51.93 -0.39 0.83 16
5 C -0.54 -12.62 8.84 -34.44 -0.30 -12.92 16
6 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16
7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16
8 N -0.88 -22.22 11.29 55.43 0.63 -21.59 16
9 Si 0.89 19.49 29.54 -169.99 -5.02 14.47 16
10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16
11 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16
12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
13 N -1.10 -20.63 4.81 -5.88 -0.03 -20.66 16
14 S 2.72 50.68 5.84 -107.50 -0.63 50.05 16
15 O -0.97 -19.06 17.77 -57.17 -1.02 -20.07 16
16 O -0.96 -19.63 17.26 -57.17 -0.99 -20.62 16
17 C -0.79 -13.89 6.46 28.85 0.19 -13.70 16
18 C 0.05 0.81 9.72 -39.01 -0.38 0.43 16
19 C -0.18 -2.88 5.98 -104.65 -0.63 -3.51 16
20 C 0.55 8.17 8.30 34.29 0.28 8.46 16
21 O -0.52 -8.91 17.58 -19.32 -0.34 -9.25 16
22 O -0.51 -5.67 13.08 -40.78 -0.53 -6.20 16
23 C -0.17 -2.46 10.56 29.97 0.32 -2.14 16
24 S 0.37 5.92 22.86 -107.50 -2.46 3.46 16
25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16
26 H 0.04 0.68 7.62 -51.93 -0.40 0.29 16
27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
29 H 0.11 2.50 5.96 -51.93 -0.31 2.19 16
30 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16
31 H 0.41 6.78 8.84 -34.47 -0.30 6.48 16
32 H 0.16 2.63 8.05 -52.49 -0.42 2.21 16
33 H 0.41 2.52 9.11 45.56 0.42 2.94 16
34 H 0.18 2.01 8.02 -52.49 -0.42 1.58 16
LS Contribution 329.68 15.07 4.97 4.97
Total: -1.00 -30.36 329.68 -8.61 -38.96
By element:
Atomic # 1 Polarization: 10.17 SS G_CDS: -2.64 Total: 7.53 kcal
Atomic # 6 Polarization: -20.50 SS G_CDS: -0.55 Total: -21.05 kcal
Atomic # 7 Polarization: -42.85 SS G_CDS: 0.60 Total: -42.25 kcal
Atomic # 8 Polarization: -53.26 SS G_CDS: -2.88 Total: -56.14 kcal
Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal
Atomic # 16 Polarization: 56.60 SS G_CDS: -3.09 Total: 53.51 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -30.36 -8.61 -38.96 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000054176914.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -103.772 kcal
(2) G-P(sol) polarization free energy of solvation -30.355 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.128 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal
(6) G-S(sol) free energy of system = (1) + (5) -142.737 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds