Wall clock time and date at job start Tue Mar 31 2020 12:46:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53000 * 109.46900 * 2 1
4 4 H 1.09003 * 109.47250 * 55.26751 * 3 2 1
5 5 C 1.50703 * 109.47177 * 175.26157 * 3 2 1
6 6 H 1.08001 * 119.99767 * 120.00149 * 5 3 2
7 7 C 1.37880 * 120.00041 * 300.00092 * 5 3 2
8 8 N 1.31515 * 119.99933 * 0.02562 * 7 5 3
9 9 Si 1.86792 * 120.00022 * 179.97438 * 7 5 3
10 10 H 1.48505 * 109.47049 * 60.00381 * 9 7 5
11 11 H 1.48501 * 109.47251 * 180.02562 * 9 7 5
12 12 H 1.48504 * 109.47195 * 300.00536 * 9 7 5
13 13 N 1.46495 * 109.47524 * 295.26384 * 3 2 1
14 14 S 1.65604 * 120.00147 * 144.23227 * 13 3 2
15 15 O 1.42096 * 106.40436 * 177.37893 * 14 13 3
16 16 O 1.42102 * 106.40121 * 310.29848 * 14 13 3
17 17 C 1.76195 * 107.21975 * 63.83665 * 14 13 3
18 18 C 1.32737 * 124.69921 * 89.99920 * 17 14 13
19 19 C 1.44473 * 113.08971 * 179.97438 * 18 17 14
20 20 C 1.47023 * 123.47593 * 180.02562 * 19 18 17
21 21 O 1.21565 * 120.00340 * 359.97438 * 20 19 18
22 22 O 1.34806 * 120.00100 * 179.97438 * 20 19 18
23 23 C 1.36107 * 113.04936 * 359.97438 * 19 18 17
24 24 S 1.70453 * 110.80288 * 359.76781 * 23 19 18
25 25 H 1.08994 * 109.47501 * 295.25993 * 1 2 3
26 26 H 1.09003 * 109.46837 * 55.26499 * 1 2 3
27 27 H 1.09000 * 109.46862 * 175.26110 * 1 2 3
28 28 H 1.09000 * 109.47384 * 240.00316 * 2 1 3
29 29 H 1.08995 * 109.47242 * 120.00258 * 2 1 3
30 30 H 0.96999 * 119.99926 * 180.02562 * 8 7 5
31 31 H 0.97001 * 120.00219 * 324.50670 * 13 3 2
32 32 H 1.07996 * 123.46031 * 359.97438 * 18 17 14
33 33 H 0.96696 * 117.00157 * 179.97438 * 22 20 19
34 34 H 1.07996 * 124.59720 * 180.02562 * 23 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6090 1.9803 0.8446
5 6 3.5424 1.4442 0.1174
6 1 4.1443 1.8900 -0.6607
7 6 4.1486 0.8766 1.2181
8 7 3.4156 0.3333 2.1653
9 14 6.0109 0.8781 1.3632
10 1 6.5063 2.2781 1.3629
11 1 6.4093 0.2118 2.6291
12 1 6.5976 0.1452 0.2126
13 7 1.6470 2.0995 -1.2490
14 16 1.2319 3.7026 -1.2464
15 8 0.9661 4.0505 -2.5982
16 8 0.2851 3.8703 -0.2002
17 6 2.6645 4.6116 -0.7712
18 6 3.5763 5.0801 -1.6145
19 6 4.6474 5.7897 -0.9539
20 6 5.7765 6.4023 -1.6691
21 8 5.8425 6.3252 -2.8805
22 8 6.7387 7.0493 -0.9815
23 6 4.5029 5.8337 0.3988
24 16 3.0794 5.0301 0.8819
25 1 -0.3634 0.4385 0.9293
26 1 -0.3633 0.5856 -0.8446
27 1 -0.3633 -1.0242 -0.0849
28 1 1.8934 -0.5138 -0.8900
29 1 1.8934 -0.5138 0.8899
30 1 3.8420 -0.0656 2.9398
31 1 1.6261 1.5945 -2.0770
32 1 3.5230 4.9448 -2.6846
33 1 7.4612 7.4355 -1.4953
34 1 5.1940 6.3161 1.0740
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000054176914.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:46:38
Heat of formation + Delta-G solvation = -165.067221 kcal
Electronic energy + Delta-G solvation = -23016.210519 eV
Core-core repulsion = 19359.685913 eV
Total energy + Delta-G solvation = -3656.524606 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 319.043 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.26705 -38.49617 -38.15837 -37.63630 -37.06564 -36.96005 -34.11129 -32.24418
-31.50495 -28.49461 -26.68595 -24.82284 -24.28535 -21.92872 -21.03492 -20.39300
-19.58734 -19.11762 -18.55815 -18.34351 -17.61667 -17.12543 -16.73106 -16.57203
-16.33954 -15.55376 -14.91618 -14.81252 -14.65854 -14.24721 -14.22998 -13.90737
-13.56437 -13.35459 -13.22602 -13.14481 -12.97931 -12.80865 -12.64423 -12.58198
-12.55584 -12.41589 -12.08781 -11.65850 -11.59201 -11.55523 -11.40503 -10.61678
-10.40495 -10.00106 -9.63048 -8.05114 -6.18288 -0.71936 -0.47899 0.26589
0.32550 0.68422 1.42602 1.47789 1.51621 1.88192 2.02310 2.17639
2.47571 2.72811 3.22663 3.53070 3.70853 4.02019 4.32227 4.41672
4.51947 4.62310 4.63817 4.77392 4.92094 4.93541 5.16801 5.40164
5.46981 5.48632 5.72412 5.83839 6.06521 6.27329 6.45604 6.89525
6.91409 7.50782 8.97477
Molecular weight = 319.04amu
Principal moments of inertia in cm(-1)
A = 0.011606 B = 0.007078 C = 0.005115
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2411.874885 B = 3955.041742 C = 5472.401108
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.120 4.120
3 C 0.278 3.722
4 H 0.031 0.969
5 C -0.534 4.534
6 H 0.059 0.941
7 C 0.038 3.962
8 N -0.904 5.904
9 Si 0.928 3.072
10 H -0.269 1.269
11 H -0.286 1.286
12 H -0.280 1.280
13 N -1.094 6.094
14 S 2.732 3.268
15 O -0.985 6.985
16 O -0.980 6.980
17 C -0.811 4.811
18 C 0.047 3.953
19 C -0.202 4.202
20 C 0.559 3.441
21 O -0.547 6.547
22 O -0.500 6.500
23 C -0.147 4.147
24 S 0.360 5.640
25 H 0.038 0.962
26 H 0.049 0.951
27 H 0.057 0.943
28 H 0.046 0.954
29 H 0.082 0.918
30 H 0.264 0.736
31 H 0.419 0.581
32 H 0.166 0.834
33 H 0.435 0.565
34 H 0.218 0.782
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.924 9.328 -1.489 9.888
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.160 4.160
3 C 0.173 3.827
4 H 0.049 0.951
5 C -0.574 4.574
6 H 0.077 0.923
7 C -0.164 4.164
8 N -0.543 5.543
9 Si 0.754 3.246
10 H -0.194 1.194
11 H -0.211 1.211
12 H -0.206 1.206
13 N -0.856 5.856
14 S 2.819 3.181
15 O -0.975 6.975
16 O -0.970 6.970
17 C -1.012 5.012
18 C 0.014 3.986
19 C -0.219 4.219
20 C 0.403 3.597
21 O -0.440 6.440
22 O -0.314 6.314
23 C -0.288 4.288
24 S 0.629 5.371
25 H 0.057 0.943
26 H 0.068 0.932
27 H 0.076 0.924
28 H 0.065 0.935
29 H 0.100 0.900
30 H 0.074 0.926
31 H 0.254 0.746
32 H 0.183 0.817
33 H 0.298 0.702
34 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges 1.142 9.242 0.017 9.312
hybrid contribution 3.010 0.109 -1.725 3.471
sum 4.153 9.351 -1.708 10.373
Atomic orbital electron populations
1.21785 0.96868 1.00906 1.00728 1.21704 0.93981 0.98029 1.02319
1.18457 0.93408 0.91302 0.79553 0.95124 1.21674 0.92189 1.38041
1.05478 0.92304 1.25324 1.00562 0.94922 0.95557 1.69931 1.36096
1.38435 1.09849 0.86085 0.82689 0.78641 0.77156 1.19383 1.21119
1.20577 1.55293 1.85716 1.26278 1.18307 1.00485 0.72708 0.72566
0.72355 1.93521 1.84469 1.83847 1.35694 1.93547 1.58178 1.86306
1.58952 1.35580 1.29294 1.28509 1.07789 1.20857 0.88158 0.88719
1.00845 1.19446 0.98376 1.11082 0.92947 1.19885 0.81040 0.74423
0.84398 1.90900 1.77760 1.59023 1.16279 1.84506 1.35566 1.66415
1.44943 1.26753 1.03286 0.99499 0.99245 1.83241 1.11668 1.41684
1.00484 0.94259 0.93218 0.92409 0.93489 0.89986 0.92598 0.74579
0.81691 0.70213 0.76559
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.25 9.85 71.98 0.71 -4.54 16
2 C -0.12 -5.02 5.37 30.59 0.16 -4.86 16
3 C 0.28 12.07 2.27 44.25 0.10 12.17 16
4 H 0.03 1.48 7.54 -2.39 -0.02 1.46 16
5 C -0.53 -24.90 8.84 25.60 0.23 -24.68 16
6 H 0.06 2.74 7.81 -2.91 -0.02 2.72 16
7 C 0.04 1.81 5.29 84.66 0.45 2.26 16
8 N -0.90 -45.58 11.29 21.45 0.24 -45.34 16
9 Si 0.93 39.06 29.54 68.60 2.03 41.08 16
10 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16
11 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16
12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16
13 N -1.09 -40.82 4.81 -172.52 -0.83 -41.65 16
14 S 2.73 101.53 5.84 -56.49 -0.33 101.20 16
15 O -0.98 -38.20 17.77 -128.00 -2.27 -40.48 16
16 O -0.98 -40.33 17.26 -128.00 -2.21 -42.54 16
17 C -0.81 -28.05 6.46 66.65 0.43 -27.62 16
18 C 0.05 1.53 9.72 22.68 0.22 1.75 16
19 C -0.20 -5.94 5.98 -19.88 -0.12 -6.06 16
20 C 0.56 15.26 8.30 70.13 0.58 15.84 16
21 O -0.55 -18.03 17.58 19.63 0.35 -17.69 16
22 O -0.50 -9.24 13.08 -57.18 -0.75 -9.99 16
23 C -0.15 -3.79 10.56 67.32 0.71 -3.08 16
24 S 0.36 11.07 22.86 -56.49 -1.29 9.78 16
25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16
26 H 0.05 1.67 7.62 -2.39 -0.02 1.65 16
27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16
29 H 0.08 3.87 5.96 -2.39 -0.01 3.86 16
30 H 0.26 12.90 8.31 -92.71 -0.77 12.12 16
31 H 0.42 13.63 8.84 -96.74 -0.86 12.78 16
32 H 0.17 5.25 8.05 -2.91 -0.02 5.22 16
33 H 0.44 3.74 9.11 -74.06 -0.67 3.06 16
34 H 0.22 3.88 8.02 -2.91 -0.02 3.85 16
Total: -1.00 -63.36 329.68 -1.96 -65.31
By element:
Atomic # 1 Polarization: 19.48 SS G_CDS: -0.36 Total: 19.12 kcal
Atomic # 6 Polarization: -42.29 SS G_CDS: 3.47 Total: -38.82 kcal
Atomic # 7 Polarization: -86.40 SS G_CDS: -0.59 Total: -86.99 kcal
Atomic # 8 Polarization: -105.80 SS G_CDS: -4.89 Total: -110.68 kcal
Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.08 kcal
Atomic # 16 Polarization: 112.60 SS G_CDS: -1.62 Total: 110.97 kcal
Total: -63.36 -1.96 -65.31 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000054176914.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -99.754 kcal
(2) G-P(sol) polarization free energy of solvation -63.358 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.112 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.955 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.313 kcal
(6) G-S(sol) free energy of system = (1) + (5) -165.067 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds