Wall clock time and date at job start Tue Mar 31 2020 12:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31324 * 1 3 3 Si 1.86803 * 119.99987 * 2 1 4 4 H 1.48490 * 109.47019 * 240.00170 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00137 * 3 2 1 7 7 C 1.39117 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99651 * 179.97438 * 7 2 1 9 9 N 1.36716 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99951 * 179.97438 * 9 7 2 11 11 O 1.21763 * 120.00062 * 0.02562 * 10 9 7 12 12 C 1.46198 * 119.99982 * 180.27788 * 10 9 7 13 13 C 1.35017 * 120.00030 * 179.72985 * 12 10 9 14 14 C 1.47094 * 119.99904 * 179.97438 * 13 12 10 15 15 C 1.39931 * 120.16151 * 359.97438 * 14 13 12 16 16 C 1.37801 * 119.83638 * 179.97438 * 15 14 13 17 17 C 1.38580 * 120.16194 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 119.83650 * 179.97438 * 17 16 15 19 19 C 1.38540 * 120.32324 * 0.02562 * 17 16 15 20 20 C 1.50697 * 119.91602 * 179.97438 * 19 17 16 21 21 F 1.39901 * 109.47135 * 179.97438 * 20 19 17 22 22 F 1.39905 * 109.47201 * 299.99245 * 20 19 17 23 23 F 1.39897 * 109.47680 * 59.99516 * 20 19 17 24 24 C 1.37847 * 120.15823 * 359.69308 * 19 17 16 25 25 H 0.97005 * 119.99979 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00312 * 0.02562 * 9 7 2 27 27 H 1.08001 * 119.99713 * 359.72209 * 12 10 9 28 28 H 1.08002 * 119.99729 * 359.97438 * 13 12 10 29 29 H 1.08001 * 120.07719 * 359.95208 * 15 14 13 30 30 H 1.07999 * 119.91733 * 180.02562 * 16 15 14 31 31 H 1.07999 * 120.07993 * 180.28079 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.1009 1.6964 -1.2124 5 1 1.2822 2.7465 0.0006 6 1 3.1010 1.6964 1.2125 7 6 2.0088 -1.2048 -0.0005 8 1 3.0888 -1.2047 -0.0010 9 7 1.3252 -2.3888 -0.0005 10 6 1.9991 -3.5560 -0.0016 11 8 3.2168 -3.5560 -0.0021 12 6 1.2682 -4.8221 -0.0077 13 6 1.9432 -5.9913 -0.0143 14 6 1.2078 -7.2652 -0.0199 15 6 -0.1915 -7.2691 -0.0179 16 6 -0.8738 -8.4664 -0.0237 17 6 -0.1775 -9.6645 -0.0310 18 17 -1.0455 -11.1679 -0.0376 19 6 1.2079 -9.6684 -0.0319 20 6 1.9558 -10.9767 -0.0393 21 9 3.3324 -10.7269 -0.0395 22 9 1.6156 -11.7148 1.0995 23 9 1.6140 -11.7030 -1.1850 24 6 1.9038 -8.4785 -0.0320 25 1 -0.4850 0.8401 0.0004 26 1 0.3552 -2.3888 -0.0005 27 1 0.1881 -4.8221 -0.0069 28 1 3.0233 -5.9913 -0.0154 29 1 -0.7354 -6.3361 -0.0115 30 1 -1.9537 -8.4710 -0.0226 31 1 2.9838 -8.4830 -0.0373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060332232.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:11 Heat of formation + Delta-G solvation = -156.119931 kcal Electronic energy + Delta-G solvation = -22842.547687 eV Core-core repulsion = 18507.066667 eV Total energy + Delta-G solvation = -4335.481021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.033 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.32884 -47.85622 -47.76845 -39.79538 -38.27535 -36.90868 -34.47326 -33.68799 -32.14405 -31.49841 -29.71904 -26.27727 -25.68764 -23.60270 -22.78352 -21.00209 -19.08645 -18.65996 -18.58518 -18.33684 -17.84568 -16.81787 -16.46466 -15.56767 -14.96266 -14.76773 -14.65235 -14.50715 -14.23116 -14.19025 -13.97215 -13.94278 -13.85482 -13.78925 -13.48077 -13.07946 -12.85326 -12.24908 -12.05255 -11.93893 -11.69185 -11.37358 -11.24841 -11.05461 -10.61082 -10.44262 -10.14163 -9.71413 -9.60292 -8.59734 -8.26838 -8.15173 -6.72438 -3.99621 0.26671 0.71091 1.65147 1.98710 2.43223 3.08815 3.12761 3.16861 3.31561 3.45229 3.76352 3.97708 4.19258 4.24378 4.40552 4.54193 4.77657 4.88248 4.94683 5.15098 5.20171 5.39197 5.46679 5.68222 5.81760 5.89858 6.13218 6.35146 6.72161 6.78314 7.27396 7.82306 8.36553 8.92027 9.27608 9.87064 10.43385 Molecular weight = 319.03amu Principal moments of inertia in cm(-1) A = 0.029946 B = 0.002429 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.805152 B =11525.386974 C =12285.673879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.024 3.976 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.291 4.291 8 H 0.110 0.890 9 N -0.534 5.534 10 C 0.442 3.558 11 O -0.604 6.604 12 C -0.130 4.130 13 C -0.108 4.108 14 C -0.028 4.028 15 C -0.080 4.080 16 C -0.103 4.103 17 C -0.008 4.008 18 Cl -0.054 7.054 19 C -0.174 4.174 20 C 0.510 3.490 21 F -0.174 7.174 22 F -0.172 7.172 23 F -0.172 7.172 24 C -0.058 4.058 25 H 0.279 0.721 26 H 0.395 0.605 27 H 0.116 0.884 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 -19.007 -0.072 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.181 4.181 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.421 4.421 8 H 0.127 0.873 9 N -0.166 5.166 10 C 0.232 3.768 11 O -0.493 6.493 12 C -0.152 4.152 13 C -0.130 4.130 14 C -0.029 4.029 15 C -0.098 4.098 16 C -0.122 4.122 17 C -0.036 4.036 18 Cl -0.025 7.025 19 C -0.176 4.176 20 C 0.456 3.544 21 F -0.155 7.155 22 F -0.153 7.153 23 F -0.153 7.153 24 C -0.077 4.077 25 H 0.089 0.911 26 H 0.229 0.771 27 H 0.134 0.866 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.584 -18.930 -0.073 19.266 hybrid contribution -0.308 0.460 0.000 0.553 sum -3.892 -18.470 -0.073 18.876 Atomic orbital electron populations 1.69562 1.06271 1.29225 1.46978 1.25463 0.95714 1.00366 0.96512 0.85802 0.78872 0.79544 0.79488 1.19477 1.20647 1.19482 1.19867 0.93938 0.82251 1.46017 0.87254 1.41944 1.09517 1.05073 1.60096 1.17709 0.87894 0.83764 0.87408 1.90663 1.13282 1.87178 1.58141 1.23276 0.99484 0.93854 0.98601 1.21896 1.00241 0.89058 1.01757 1.19195 0.92933 0.93276 0.97457 1.21690 0.93644 0.98367 0.96097 1.20979 1.00894 0.89790 1.00498 1.20651 0.90497 0.88651 1.03765 1.98404 1.76365 1.31142 1.96615 1.19710 0.92707 0.93175 1.12024 1.18113 0.77227 0.84816 0.74248 1.93184 1.31955 1.94154 1.96242 1.93234 1.92029 1.78966 1.51065 1.93232 1.91993 1.79551 1.50527 1.21190 1.01050 0.89539 0.95884 0.91108 0.77144 0.86620 0.84475 0.83506 0.83682 0.83176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.30 13.05 55.50 0.72 -21.58 16 2 C 0.02 0.60 5.50 -17.44 -0.10 0.51 16 3 Si 0.94 19.64 29.55 -169.99 -5.02 14.62 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.29 -7.67 9.68 -15.05 -0.15 -7.82 16 8 H 0.11 3.02 7.15 -52.49 -0.38 2.65 16 9 N -0.53 -12.89 5.27 -12.32 -0.06 -12.95 16 10 C 0.44 10.15 7.68 -13.06 -0.10 10.05 16 11 O -0.60 -16.12 15.80 5.13 0.08 -16.04 16 12 C -0.13 -2.22 9.41 -37.53 -0.35 -2.57 16 13 C -0.11 -1.64 9.46 -37.14 -0.35 -1.99 16 14 C -0.03 -0.35 5.87 -105.06 -0.62 -0.97 16 15 C -0.08 -0.85 9.41 -39.11 -0.37 -1.22 16 16 C -0.10 -1.00 9.81 -39.62 -0.39 -1.39 16 17 C -0.01 -0.09 6.26 -39.34 -0.25 -0.34 16 18 Cl -0.05 -0.57 26.55 -51.86 -1.38 -1.94 16 19 C -0.17 -2.01 5.37 -104.66 -0.56 -2.57 16 20 C 0.51 5.87 2.86 36.00 0.10 5.97 16 21 F -0.17 -1.99 15.96 2.25 0.04 -1.95 16 22 F -0.17 -2.02 16.37 2.25 0.04 -1.98 16 23 F -0.17 -2.02 16.37 2.25 0.04 -1.98 16 24 C -0.06 -0.68 9.17 -39.11 -0.36 -1.04 16 25 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 26 H 0.39 8.91 7.87 -40.82 -0.32 8.59 16 27 H 0.12 1.58 6.07 -52.49 -0.32 1.26 16 28 H 0.14 2.23 7.52 -52.49 -0.39 1.84 16 29 H 0.15 1.33 6.17 -52.49 -0.32 1.01 16 30 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.15 1.57 7.15 -52.49 -0.38 1.20 16 LS Contribution 309.03 15.07 4.66 4.66 Total: -1.00 -28.80 309.03 -6.04 -34.84 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -1.67 Total: 7.68 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -3.48 Total: -3.37 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.66 Total: -34.53 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.08 Total: -16.04 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.11 Total: -5.91 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.38 Total: -1.94 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.80 -6.04 -34.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060332232.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.276 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds