Wall clock time and date at job start Tue Mar 31 2020 12:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31324 * 1 3 3 Si 1.86803 * 119.99987 * 2 1 4 4 H 1.48490 * 109.47019 * 240.00170 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00137 * 3 2 1 7 7 C 1.39117 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99651 * 179.97438 * 7 2 1 9 9 N 1.36716 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99951 * 179.97438 * 9 7 2 11 11 O 1.21763 * 120.00062 * 0.02562 * 10 9 7 12 12 C 1.46198 * 119.99982 * 180.27788 * 10 9 7 13 13 C 1.35017 * 120.00030 * 179.72985 * 12 10 9 14 14 C 1.47094 * 119.99904 * 179.97438 * 13 12 10 15 15 C 1.39931 * 120.16151 * 359.97438 * 14 13 12 16 16 C 1.37801 * 119.83638 * 179.97438 * 15 14 13 17 17 C 1.38580 * 120.16194 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 119.83650 * 179.97438 * 17 16 15 19 19 C 1.38540 * 120.32324 * 0.02562 * 17 16 15 20 20 C 1.50697 * 119.91602 * 179.97438 * 19 17 16 21 21 F 1.39901 * 109.47135 * 179.97438 * 20 19 17 22 22 F 1.39905 * 109.47201 * 299.99245 * 20 19 17 23 23 F 1.39897 * 109.47680 * 59.99516 * 20 19 17 24 24 C 1.37847 * 120.15823 * 359.69308 * 19 17 16 25 25 H 0.97005 * 119.99979 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00312 * 0.02562 * 9 7 2 27 27 H 1.08001 * 119.99713 * 359.72209 * 12 10 9 28 28 H 1.08002 * 119.99729 * 359.97438 * 13 12 10 29 29 H 1.08001 * 120.07719 * 359.95208 * 15 14 13 30 30 H 1.07999 * 119.91733 * 180.02562 * 16 15 14 31 31 H 1.07999 * 120.07993 * 180.28079 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.1009 1.6964 -1.2124 5 1 1.2822 2.7465 0.0006 6 1 3.1010 1.6964 1.2125 7 6 2.0088 -1.2048 -0.0005 8 1 3.0888 -1.2047 -0.0010 9 7 1.3252 -2.3888 -0.0005 10 6 1.9991 -3.5560 -0.0016 11 8 3.2168 -3.5560 -0.0021 12 6 1.2682 -4.8221 -0.0077 13 6 1.9432 -5.9913 -0.0143 14 6 1.2078 -7.2652 -0.0199 15 6 -0.1915 -7.2691 -0.0179 16 6 -0.8738 -8.4664 -0.0237 17 6 -0.1775 -9.6645 -0.0310 18 17 -1.0455 -11.1679 -0.0376 19 6 1.2079 -9.6684 -0.0319 20 6 1.9558 -10.9767 -0.0393 21 9 3.3324 -10.7269 -0.0395 22 9 1.6156 -11.7148 1.0995 23 9 1.6140 -11.7030 -1.1850 24 6 1.9038 -8.4785 -0.0320 25 1 -0.4850 0.8401 0.0004 26 1 0.3552 -2.3888 -0.0005 27 1 0.1881 -4.8221 -0.0069 28 1 3.0233 -5.9913 -0.0154 29 1 -0.7354 -6.3361 -0.0115 30 1 -1.9537 -8.4710 -0.0226 31 1 2.9838 -8.4830 -0.0373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060332232.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:10 Heat of formation + Delta-G solvation = -172.178614 kcal Electronic energy + Delta-G solvation = -22843.244044 eV Core-core repulsion = 18507.066667 eV Total energy + Delta-G solvation = -4336.177377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.033 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.24877 -48.77571 -48.69419 -40.78408 -40.02477 -37.80229 -36.19330 -35.02819 -33.36314 -33.04665 -30.90257 -27.42635 -27.16754 -24.91529 -23.68106 -22.29124 -20.60296 -19.90898 -19.58103 -19.50715 -19.06557 -18.11762 -17.59623 -16.86840 -16.38863 -15.83534 -15.76192 -15.69059 -15.43056 -15.38729 -15.15059 -15.08812 -14.86400 -14.78581 -14.70302 -14.56166 -13.89062 -13.57493 -13.30694 -13.03486 -12.92384 -12.83814 -12.49329 -12.47447 -12.12686 -11.96838 -11.60886 -11.18928 -10.50249 -10.46887 -10.11337 -9.33384 -8.56546 -5.98240 -0.74102 -0.18927 0.77534 0.78792 1.42465 1.45294 1.51993 1.53158 2.22867 2.27022 2.54219 2.59144 2.83814 3.16377 3.27220 3.29702 3.54622 3.74015 3.90908 4.00225 4.05644 4.33363 4.48117 4.56959 4.77826 4.91077 4.94443 5.33217 5.38807 5.45996 5.50416 5.96034 6.52226 7.04125 7.46607 8.05422 8.59804 Molecular weight = 319.03amu Principal moments of inertia in cm(-1) A = 0.029946 B = 0.002429 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.805152 B =11525.386974 C =12285.673879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.007 4.007 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.082 0.918 9 N -0.548 5.548 10 C 0.446 3.554 11 O -0.648 6.648 12 C -0.160 4.160 13 C -0.062 4.062 14 C -0.052 4.052 15 C -0.063 4.063 16 C -0.098 4.098 17 C -0.003 4.003 18 Cl -0.047 7.047 19 C -0.186 4.186 20 C 0.511 3.489 21 F -0.175 7.175 22 F -0.173 7.173 23 F -0.173 7.173 24 C -0.050 4.050 25 H 0.283 0.717 26 H 0.400 0.600 27 H 0.155 0.845 28 H 0.122 0.878 29 H 0.168 0.832 30 H 0.176 0.824 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 -20.625 -0.080 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.209 4.209 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.100 0.900 9 N -0.181 5.181 10 C 0.237 3.763 11 O -0.539 6.539 12 C -0.180 4.180 13 C -0.083 4.083 14 C -0.052 4.052 15 C -0.081 4.081 16 C -0.116 4.116 17 C -0.030 4.030 18 Cl -0.018 7.018 19 C -0.188 4.188 20 C 0.457 3.543 21 F -0.156 7.156 22 F -0.155 7.155 23 F -0.155 7.155 24 C -0.069 4.069 25 H 0.093 0.907 26 H 0.235 0.765 27 H 0.172 0.828 28 H 0.140 0.860 29 H 0.185 0.815 30 H 0.194 0.806 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.141 -20.586 -0.081 21.218 hybrid contribution 0.181 0.468 0.001 0.502 sum -4.959 -20.118 -0.080 20.720 Atomic orbital electron populations 1.69604 1.06948 1.30021 1.47953 1.26137 0.96554 1.02602 0.95576 0.84960 0.77883 0.76258 0.79135 1.19551 1.19158 1.19560 1.19728 0.93100 0.84033 1.49795 0.89959 1.41873 1.09613 1.04881 1.61723 1.18656 0.87616 0.85338 0.84672 1.90618 1.15670 1.88277 1.59367 1.23035 1.01065 0.91116 1.02795 1.22008 0.99802 0.90010 0.96529 1.19011 0.93819 0.91882 1.00515 1.21959 0.92755 0.99702 0.93652 1.21299 1.02384 0.88693 0.99256 1.20931 0.90468 0.89524 1.02103 1.98418 1.76074 1.30829 1.96434 1.19738 0.93140 0.92973 1.12994 1.18115 0.77217 0.84837 0.74124 1.93185 1.32046 1.94148 1.96235 1.93232 1.92038 1.79040 1.51153 1.93230 1.92002 1.79623 1.50616 1.21272 1.01584 0.89393 0.94620 0.90721 0.76496 0.82765 0.85964 0.81452 0.80647 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.40 13.05 21.69 0.28 -46.11 16 2 C -0.01 -0.34 5.50 84.98 0.47 0.12 16 3 Si 0.99 40.94 29.55 68.60 2.03 42.96 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.34 -18.55 9.68 84.14 0.81 -17.73 16 8 H 0.08 4.84 7.15 -2.91 -0.02 4.82 16 9 N -0.55 -27.26 5.27 -311.07 -1.64 -28.90 16 10 C 0.45 20.93 7.68 86.31 0.66 21.60 16 11 O -0.65 -35.88 15.80 -4.55 -0.07 -35.95 16 12 C -0.16 -5.24 9.41 23.60 0.22 -5.01 16 13 C -0.06 -1.80 9.46 23.85 0.23 -1.57 16 14 C -0.05 -1.14 5.87 -20.15 -0.12 -1.26 16 15 C -0.06 -1.08 9.41 22.58 0.21 -0.87 16 16 C -0.10 -1.48 9.81 22.25 0.22 -1.27 16 17 C 0.00 -0.06 6.26 22.42 0.14 0.08 16 18 Cl -0.05 -0.83 26.55 -2.72 -0.07 -0.90 16 19 C -0.19 -3.80 5.37 -19.89 -0.11 -3.91 16 20 C 0.51 10.72 2.86 71.23 0.20 10.92 16 21 F -0.17 -3.71 15.96 44.97 0.72 -2.99 16 22 F -0.17 -3.73 16.37 44.97 0.74 -2.99 16 23 F -0.17 -3.73 16.37 44.97 0.74 -2.99 16 24 C -0.05 -1.05 9.17 22.57 0.21 -0.84 16 25 H 0.28 13.50 8.31 -92.70 -0.77 12.73 16 26 H 0.40 18.46 7.87 -92.71 -0.73 17.73 16 27 H 0.15 3.79 6.07 -2.91 -0.02 3.77 16 28 H 0.12 3.93 7.52 -2.91 -0.02 3.91 16 29 H 0.17 2.24 6.17 -2.91 -0.02 2.22 16 30 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.16 3.00 7.15 -2.91 -0.02 2.98 16 Total: -1.00 -64.46 309.03 6.37 -58.10 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.50 Total: 19.53 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 3.15 Total: 0.26 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -1.36 Total: -75.02 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.07 Total: -35.95 kcal Atomic # 9 Polarization: -11.17 SS G_CDS: 2.19 Total: -8.98 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.07 Total: -0.90 kcal Total: -64.46 6.37 -58.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060332232.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.083 kcal (2) G-P(sol) polarization free energy of solvation -64.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds