Wall clock time and date at job start Tue Mar 31 2020 12:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00024 * 2 1 4 4 H 1.48509 * 109.47407 * 240.00260 * 3 2 1 5 5 H 1.48498 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47232 * 120.00141 * 3 2 1 7 7 C 1.37875 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00204 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99718 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47044 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47094 * 179.97438 * 11 10 9 13 13 S 1.65597 * 119.99926 * 165.27799 * 12 11 10 14 14 O 1.42096 * 106.40195 * 178.26439 * 13 12 11 15 15 O 1.42108 * 106.40105 * 311.18495 * 13 12 11 16 16 C 1.76199 * 107.22117 * 64.72196 * 13 12 11 17 17 C 1.33863 * 122.44608 * 269.71546 * 16 13 12 18 18 S 1.70618 * 110.96244 * 179.88848 * 17 16 13 19 19 C 1.75834 * 91.56174 * 0.30875 * 18 17 16 20 20 C 1.46399 * 125.46070 * 179.78488 * 19 18 17 21 21 O 1.21622 * 120.00083 * 180.02562 * 20 19 18 22 22 O 1.34898 * 119.99827 * 0.04861 * 20 19 18 23 23 C 1.36745 * 109.07572 * 359.82835 * 19 18 17 24 24 H 0.97004 * 120.00051 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47804 * 59.99925 * 9 7 2 26 26 H 1.09002 * 109.47061 * 299.99380 * 9 7 2 27 27 H 1.08994 * 109.47357 * 60.00031 * 10 9 7 28 28 H 1.09002 * 109.47067 * 299.99259 * 10 9 7 29 29 H 1.09007 * 109.47007 * 59.99772 * 11 10 9 30 30 H 1.08995 * 109.47080 * 300.00016 * 11 10 9 31 31 H 0.97001 * 119.99790 * 344.99588 * 12 11 10 32 32 H 1.07997 * 124.51797 * 359.97438 * 17 16 13 33 33 H 0.96699 * 116.99968 * 179.97438 * 22 20 19 34 34 H 1.08003 * 123.35243 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4323 -6.1006 -0.0024 13 16 1.9161 -7.6314 0.3615 14 8 3.0506 -8.4778 0.2365 15 8 1.1539 -7.5245 1.5561 16 6 0.7910 -8.1172 -0.9045 17 6 -0.5255 -7.8894 -0.8215 18 16 -1.3348 -8.4757 -2.2044 19 6 0.1729 -9.0523 -2.9014 20 6 0.3070 -9.7341 -4.1901 21 8 1.4027 -10.0924 -4.5774 22 8 -0.7849 -9.9644 -4.9480 23 6 1.2001 -8.7628 -2.0465 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5564 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 2.8712 -3.6047 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 0.8539 -5.0447 -0.8923 30 1 0.8533 -5.0450 0.8877 31 1 3.3642 -5.9418 -0.2197 32 1 -1.0105 -7.3985 0.0093 33 1 -0.6465 -10.4174 -5.7911 34 1 2.2304 -9.0158 -2.2489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079865799.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:20 Heat of formation + Delta-G solvation = -145.031880 kcal Electronic energy + Delta-G solvation = -21498.342881 eV Core-core repulsion = 17842.687073 eV Total energy + Delta-G solvation = -3655.655809 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.50529 -38.26379 -37.31044 -36.42208 -36.05193 -35.91035 -33.28992 -30.92073 -30.79043 -26.46231 -26.21946 -23.70409 -23.06169 -20.72516 -20.21535 -19.60303 -18.92807 -17.98680 -17.48650 -17.03059 -16.61069 -16.10363 -16.09520 -15.62859 -14.74980 -14.58445 -14.45095 -14.22507 -13.74332 -13.54814 -13.40590 -12.63388 -12.38641 -12.26035 -12.16622 -12.05192 -12.02090 -11.90418 -11.60785 -11.28126 -11.02788 -10.93281 -10.81157 -10.60839 -9.98801 -9.69313 -9.51161 -9.38953 -9.29900 -9.15752 -8.40833 -6.06271 -4.08933 -0.20704 0.24335 0.93448 1.25732 1.35806 2.37703 2.51702 3.04194 3.30184 3.34878 3.37290 3.65528 4.22042 4.41374 4.47789 4.72478 4.82379 5.15409 5.25456 5.30045 5.38958 5.57251 5.60520 5.83920 5.97556 6.00426 6.50518 6.69580 6.89565 7.07273 7.39510 7.57345 7.69794 7.92167 8.34011 8.97291 9.55614 11.04978 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.003039 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.609636 B = 9211.407169 C =10029.179131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.116 4.116 11 C 0.111 3.889 12 N -1.110 6.110 13 S 2.711 3.289 14 O -0.959 6.959 15 O -0.952 6.952 16 C -0.706 4.706 17 C -0.115 4.115 18 S 0.311 5.689 19 C -0.285 4.285 20 C 0.562 3.438 21 O -0.502 6.502 22 O -0.513 6.513 23 C 0.035 3.965 24 H 0.262 0.738 25 H 0.018 0.982 26 H 0.020 0.980 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.419 0.581 32 H 0.195 0.805 33 H 0.420 0.580 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 -20.166 -6.429 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.155 4.155 11 C -0.014 4.014 12 N -0.872 5.872 13 S 2.796 3.204 14 O -0.949 6.949 15 O -0.942 6.942 16 C -0.803 4.803 17 C -0.256 4.256 18 S 0.579 5.421 19 C -0.404 4.404 20 C 0.405 3.595 21 O -0.391 6.391 22 O -0.326 6.326 23 C 0.004 3.996 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.255 0.745 32 H 0.212 0.788 33 H 0.279 0.721 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.263 -20.515 -5.908 21.988 hybrid contribution 1.951 0.924 -0.850 2.320 sum -3.312 -19.591 -6.758 20.987 Atomic orbital electron populations 1.69940 1.06054 1.26833 1.50580 1.25012 0.94867 0.99299 0.95207 0.86640 0.79573 0.83026 0.78647 1.20246 1.21287 1.20208 1.21175 0.93050 0.90931 1.50993 0.92633 1.19073 0.93921 0.91030 0.97569 1.21860 0.99673 0.92589 1.01428 1.21634 0.91378 0.86857 1.01518 1.55492 1.19546 1.23906 1.88243 1.01563 0.73045 0.72398 0.73416 1.93586 1.49043 1.65518 1.86802 1.93601 1.72771 1.86171 1.41622 1.29993 1.10882 1.19502 1.19965 1.25708 0.97313 0.98660 1.03945 1.83288 1.06056 1.46055 1.06715 1.23611 0.99597 1.17001 1.00162 1.19165 0.81772 0.75699 0.82889 1.90979 1.27387 1.49034 1.71694 1.84570 1.37890 1.74096 1.36012 1.20352 1.00644 0.90107 0.88504 0.92874 0.96347 0.96168 0.92238 0.92491 0.92197 0.90381 0.74518 0.78819 0.72050 0.81216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.12 -2.13 5.30 -26.73 -0.14 -2.27 16 11 C 0.11 1.63 6.22 -4.04 -0.03 1.61 16 12 N -1.11 -13.76 6.00 -10.61 -0.06 -13.82 16 13 S 2.71 34.09 5.79 -107.50 -0.62 33.46 16 14 O -0.96 -13.99 17.64 -57.17 -1.01 -15.00 16 15 O -0.95 -14.29 17.10 -57.17 -0.98 -15.27 16 16 C -0.71 -7.75 5.84 -41.42 -0.24 -7.99 16 17 C -0.12 -1.08 10.40 29.20 0.30 -0.78 16 18 S 0.31 2.52 22.92 -107.50 -2.46 0.06 16 19 C -0.28 -2.97 6.45 -36.84 -0.24 -3.20 16 20 C 0.56 5.81 8.30 34.01 0.28 6.09 16 21 O -0.50 -6.59 17.63 -19.36 -0.34 -6.93 16 22 O -0.51 -3.56 13.29 -41.04 -0.55 -4.11 16 23 C 0.04 0.39 9.53 -40.42 -0.39 0.01 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.15 7.76 -51.93 -0.40 0.74 16 31 H 0.42 4.55 8.65 -34.47 -0.30 4.25 16 32 H 0.19 1.47 7.97 -52.49 -0.42 1.05 16 33 H 0.42 0.96 9.11 45.56 0.42 1.38 16 34 H 0.17 1.83 7.98 -52.48 -0.42 1.41 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -35.75 334.32 -9.04 -44.79 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -2.78 Total: 0.10 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.00 Total: -19.16 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.67 Total: -39.07 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -2.87 Total: -41.30 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 36.61 SS G_CDS: -3.09 Total: 33.52 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.75 -9.04 -44.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079865799.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.242 kcal (2) G-P(sol) polarization free energy of solvation -35.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds