Wall clock time and date at job start Tue Mar 31 2020 12:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00024 * 2 1 4 4 H 1.48509 * 109.47407 * 240.00260 * 3 2 1 5 5 H 1.48498 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47232 * 120.00141 * 3 2 1 7 7 C 1.37875 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00204 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99718 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47044 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47094 * 179.97438 * 11 10 9 13 13 S 1.65597 * 119.99926 * 165.27799 * 12 11 10 14 14 O 1.42096 * 106.40195 * 178.26439 * 13 12 11 15 15 O 1.42108 * 106.40105 * 311.18495 * 13 12 11 16 16 C 1.76199 * 107.22117 * 64.72196 * 13 12 11 17 17 C 1.33863 * 122.44608 * 269.71546 * 16 13 12 18 18 S 1.70618 * 110.96244 * 179.88848 * 17 16 13 19 19 C 1.75834 * 91.56174 * 0.30875 * 18 17 16 20 20 C 1.46399 * 125.46070 * 179.78488 * 19 18 17 21 21 O 1.21622 * 120.00083 * 180.02562 * 20 19 18 22 22 O 1.34898 * 119.99827 * 0.04861 * 20 19 18 23 23 C 1.36745 * 109.07572 * 359.82835 * 19 18 17 24 24 H 0.97004 * 120.00051 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47804 * 59.99925 * 9 7 2 26 26 H 1.09002 * 109.47061 * 299.99380 * 9 7 2 27 27 H 1.08994 * 109.47357 * 60.00031 * 10 9 7 28 28 H 1.09002 * 109.47067 * 299.99259 * 10 9 7 29 29 H 1.09007 * 109.47007 * 59.99772 * 11 10 9 30 30 H 1.08995 * 109.47080 * 300.00016 * 11 10 9 31 31 H 0.97001 * 119.99790 * 344.99588 * 12 11 10 32 32 H 1.07997 * 124.51797 * 359.97438 * 17 16 13 33 33 H 0.96699 * 116.99968 * 179.97438 * 22 20 19 34 34 H 1.08003 * 123.35243 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4323 -6.1006 -0.0024 13 16 1.9161 -7.6314 0.3615 14 8 3.0506 -8.4778 0.2365 15 8 1.1539 -7.5245 1.5561 16 6 0.7910 -8.1172 -0.9045 17 6 -0.5255 -7.8894 -0.8215 18 16 -1.3348 -8.4757 -2.2044 19 6 0.1729 -9.0523 -2.9014 20 6 0.3070 -9.7341 -4.1901 21 8 1.4027 -10.0924 -4.5774 22 8 -0.7849 -9.9644 -4.9480 23 6 1.2001 -8.7628 -2.0465 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5564 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 2.8712 -3.6047 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 0.8539 -5.0447 -0.8923 30 1 0.8533 -5.0450 0.8877 31 1 3.3642 -5.9418 -0.2197 32 1 -1.0105 -7.3985 0.0093 33 1 -0.6465 -10.4174 -5.7911 34 1 2.2304 -9.0158 -2.2489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079865799.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:20 Heat of formation + Delta-G solvation = -172.837630 kcal Electronic energy + Delta-G solvation = -21499.548629 eV Core-core repulsion = 17842.687073 eV Total energy + Delta-G solvation = -3656.861556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26078 -39.03393 -38.41134 -37.36323 -37.14278 -37.01322 -35.14884 -32.61867 -31.56597 -28.18373 -27.00647 -24.75895 -24.49974 -22.22934 -21.11981 -20.36171 -19.91115 -18.72476 -18.56693 -18.44801 -17.90752 -17.17380 -16.86443 -16.66897 -16.44535 -16.04362 -15.63495 -15.07006 -14.55871 -14.30566 -14.28221 -14.16634 -14.03813 -13.72334 -13.31592 -13.22442 -13.18273 -12.78969 -12.74051 -12.73529 -12.51072 -12.32401 -12.12692 -11.86742 -11.64848 -11.36848 -11.13960 -10.51357 -10.48481 -10.43704 -10.02916 -8.16769 -6.26250 -0.97144 -0.73070 0.20953 0.43315 0.60614 1.43544 1.45155 1.52876 1.58790 1.85466 2.06170 2.44165 2.67191 3.17357 3.28392 3.75548 3.97688 4.02594 4.05599 4.30500 4.38735 4.53337 4.65381 4.72793 4.79921 5.02022 5.22074 5.26183 5.39489 5.57538 5.80083 5.90250 6.06266 6.29304 6.79344 6.90607 7.42582 8.94492 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.003039 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.609636 B = 9211.407169 C =10029.179131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.119 3.881 12 N -1.106 6.106 13 S 2.732 3.268 14 O -0.981 6.981 15 O -0.977 6.977 16 C -0.714 4.714 17 C -0.126 4.126 18 S 0.388 5.612 19 C -0.308 4.308 20 C 0.567 3.433 21 O -0.538 6.538 22 O -0.502 6.502 23 C 0.022 3.978 24 H 0.263 0.737 25 H 0.002 0.998 26 H -0.002 1.002 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.427 0.573 32 H 0.212 0.788 33 H 0.440 0.560 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.312 -20.331 -7.131 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.007 4.007 12 N -0.868 5.868 13 S 2.820 3.180 14 O -0.972 6.972 15 O -0.968 6.968 16 C -0.814 4.814 17 C -0.267 4.267 18 S 0.655 5.345 19 C -0.427 4.427 20 C 0.411 3.589 21 O -0.430 6.430 22 O -0.317 6.317 23 C -0.009 4.009 24 H 0.072 0.928 25 H 0.021 0.979 26 H 0.017 0.983 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.264 0.736 32 H 0.229 0.771 33 H 0.304 0.696 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.727 -20.687 -6.609 22.459 hybrid contribution 1.968 0.918 -0.703 2.283 sum -3.759 -19.769 -7.312 21.410 Atomic orbital electron populations 1.70060 1.07568 1.27725 1.51696 1.25889 0.95737 1.03050 0.94934 0.85592 0.78335 0.78612 0.79044 1.19301 1.21037 1.19476 1.21687 0.93615 0.92481 1.50409 0.92218 1.18986 0.94471 0.92434 0.95672 1.21632 0.98623 0.92464 1.01841 1.21415 0.91276 0.85588 1.02422 1.55287 1.19807 1.23347 1.88393 1.00647 0.72505 0.71783 0.73110 1.93555 1.50425 1.65945 1.87255 1.93565 1.73181 1.86433 1.43571 1.29569 1.11099 1.21153 1.19608 1.26076 0.97103 0.98300 1.05254 1.83039 1.03479 1.43534 1.04424 1.23835 1.00990 1.17381 1.00453 1.19178 0.81764 0.74980 0.82957 1.90963 1.28817 1.50645 1.72572 1.84523 1.36248 1.73887 1.37016 1.20373 1.00915 0.90689 0.88928 0.92827 0.97924 0.98321 0.92264 0.91649 0.90575 0.90429 0.73632 0.77131 0.69631 0.81763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.47 13.29 21.45 0.28 -54.18 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -29.50 9.11 25.60 0.23 -29.27 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.11 -3.83 5.30 30.60 0.16 -3.67 16 11 C 0.12 3.35 6.22 86.38 0.54 3.89 16 12 N -1.11 -26.39 6.00 -187.48 -1.12 -27.52 16 13 S 2.73 67.18 5.79 -56.49 -0.33 66.85 16 14 O -0.98 -28.52 17.64 -128.00 -2.26 -30.78 16 15 O -0.98 -28.77 17.10 -128.00 -2.19 -30.96 16 16 C -0.71 -14.90 5.84 21.08 0.12 -14.78 16 17 C -0.13 -2.11 10.40 66.82 0.70 -1.42 16 18 S 0.39 5.25 22.92 -56.49 -1.29 3.96 16 19 C -0.31 -5.96 6.45 24.05 0.16 -5.80 16 20 C 0.57 11.01 8.30 69.95 0.58 11.59 16 21 O -0.54 -13.95 17.63 19.44 0.34 -13.60 16 22 O -0.50 -5.83 13.29 -58.13 -0.77 -6.60 16 23 C 0.02 0.48 9.53 21.72 0.21 0.69 16 24 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 26 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16 30 H 0.08 2.22 7.76 -2.39 -0.02 2.20 16 31 H 0.43 8.86 8.65 -96.74 -0.84 8.03 16 32 H 0.21 2.72 7.97 -2.91 -0.02 2.69 16 33 H 0.44 1.01 9.11 -74.06 -0.67 0.33 16 34 H 0.16 3.60 7.98 -2.91 -0.02 3.58 16 Total: -1.00 -76.20 334.32 -2.35 -78.56 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -0.35 Total: 6.21 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 3.30 Total: -36.96 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -0.84 Total: -81.70 kcal Atomic # 8 Polarization: -77.06 SS G_CDS: -4.88 Total: -81.94 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 72.43 SS G_CDS: -1.62 Total: 70.81 kcal Total: -76.20 -2.35 -78.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079865799.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.280 kcal (2) G-P(sol) polarization free energy of solvation -76.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds