Wall clock time and date at job start Tue Mar 31 2020 12:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38239 * 119.99429 * 2 1 4 4 C 1.38308 * 119.99122 * 179.97438 * 3 2 1 5 5 Br 1.89101 * 120.01032 * 179.97438 * 4 3 2 6 6 C 1.38346 * 119.97838 * 359.97438 * 4 3 2 7 7 C 1.38201 * 119.99180 * 359.75192 * 6 4 3 8 8 C 1.38223 * 119.99801 * 179.97438 * 2 1 3 9 9 S 1.76203 * 119.98809 * 0.02562 * 8 2 1 10 10 O 1.42098 * 106.39855 * 311.44525 * 9 8 2 11 11 O 1.42094 * 106.40082 * 178.52719 * 9 8 2 12 12 N 1.65595 * 107.21766 * 64.98539 * 9 8 2 13 13 C 1.36937 * 120.00543 * 63.25216 * 12 9 8 14 14 H 1.07997 * 119.99260 * 5.05842 * 13 12 9 15 15 C 1.38810 * 120.00102 * 185.05476 * 13 12 9 16 16 N 1.31615 * 120.00107 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99709 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47496 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47101 * 120.00377 * 17 15 13 20 20 H 1.48498 * 109.47388 * 240.00011 * 17 15 13 21 21 H 1.09002 * 109.46755 * 264.37381 * 1 2 3 22 22 H 1.08997 * 109.47261 * 24.37353 * 1 2 3 23 23 H 1.09001 * 109.46482 * 144.37677 * 1 2 3 24 24 H 1.08001 * 120.00366 * 359.95722 * 3 2 1 25 25 H 1.08004 * 120.00652 * 179.97438 * 6 4 3 26 26 H 1.07991 * 119.99461 * 180.27223 * 7 6 4 27 27 H 0.97014 * 119.99903 * 243.25247 * 12 9 8 28 28 H 0.97004 * 119.99849 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5811 1.1972 0.0005 5 35 4.5270 2.8346 -0.0002 6 6 4.2724 -0.0012 0.0016 7 6 3.5807 -1.1977 0.0073 8 6 2.1981 -1.1971 0.0005 9 16 1.3167 -2.7228 0.0005 10 8 0.3343 -2.6186 1.0220 11 8 2.2959 -3.7519 -0.0339 12 7 0.4929 -2.8130 -1.4331 13 6 1.1806 -2.8556 -2.6166 14 1 2.2590 -2.9129 -2.6125 15 6 0.4915 -2.8253 -3.8212 16 7 -0.8228 -2.7550 -3.8260 17 14 1.4297 -2.8827 -5.4354 18 1 2.8868 -2.9587 -5.1588 19 1 1.0103 -4.0785 -6.2095 20 1 1.1380 -1.6570 -6.2215 21 1 -0.3633 -0.1008 1.0228 22 1 -0.3633 0.9360 -0.4241 23 1 -0.3632 -0.8354 -0.5986 24 1 1.6580 2.1326 -0.0007 25 1 5.3524 -0.0018 0.0016 26 1 4.1202 -2.1332 0.0126 27 1 -0.4770 -2.8357 -1.4347 28 1 -1.3042 -2.7334 -4.6678 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128903525.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:11 Heat of formation + Delta-G solvation = -50.909533 kcal Electronic energy + Delta-G solvation = -17145.922096 eV Core-core repulsion = 14142.043252 eV Total energy + Delta-G solvation = -3003.878844 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 318.966 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.10236 -36.17750 -34.81967 -34.75823 -33.01134 -31.84461 -31.06586 -29.33904 -26.78737 -24.62779 -22.61312 -21.39917 -18.54579 -18.27181 -17.19218 -16.38643 -15.60149 -15.18516 -14.66135 -14.26133 -14.18473 -13.75359 -13.50208 -13.03587 -12.33617 -12.22174 -11.99277 -11.82119 -11.38579 -11.19659 -11.14302 -11.05277 -10.90517 -10.76491 -10.60207 -10.40477 -10.32419 -10.04301 -9.88282 -8.80361 -8.57611 -8.38560 -6.61274 -4.01273 0.93156 1.47249 1.48117 1.60955 3.11770 3.18086 3.21823 3.56976 3.98138 4.38795 4.69128 4.82811 4.98194 5.02610 5.27648 5.35995 5.58810 5.77593 5.85284 6.00992 6.02266 6.21240 6.25575 6.47179 6.57485 6.96057 6.98828 7.35776 8.54372 8.65675 9.10692 10.53673 Molecular weight = 318.97amu Principal moments of inertia in cm(-1) A = 0.016033 B = 0.005292 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.961548 B = 5290.033192 C = 6131.628634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.026 3.974 3 C -0.120 4.120 4 C -0.051 4.051 5 Br -0.061 7.061 6 C -0.126 4.126 7 C -0.021 4.021 8 C -0.644 4.644 9 S 2.598 3.402 10 O -0.999 6.999 11 O -0.974 6.974 12 N -0.943 5.943 13 C -0.266 4.266 14 H 0.106 0.894 15 C 0.033 3.967 16 N -0.869 5.869 17 Si 0.923 3.077 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.279 1.279 21 H 0.091 0.909 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.146 0.854 27 H 0.412 0.588 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.879 10.176 4.510 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.024 3.976 3 C -0.141 4.141 4 C -0.130 4.130 5 Br 0.025 6.975 6 C -0.147 4.147 7 C -0.040 4.040 8 C -0.723 4.723 9 S 2.689 3.311 10 O -0.988 6.988 11 O -0.964 6.964 12 N -0.694 5.694 13 C -0.408 4.408 14 H 0.124 0.876 15 C -0.176 4.176 16 N -0.510 5.510 17 Si 0.749 3.251 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.204 1.204 21 H 0.110 0.890 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.151 0.849 25 H 0.151 0.849 26 H 0.163 0.837 27 H 0.248 0.752 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.355 10.263 5.268 13.681 hybrid contribution 0.120 0.559 -1.196 1.326 sum 7.475 10.822 4.072 13.768 Atomic orbital electron populations 1.21217 0.89946 1.04403 1.04182 1.19494 0.96133 0.91144 0.90794 1.21049 0.91973 0.98659 1.02373 1.21880 0.94794 0.91305 1.05025 1.96664 1.75401 1.27808 1.97630 1.21143 1.00090 0.91111 1.02353 1.20982 0.92647 0.98343 0.92071 1.32138 1.06214 1.23167 1.10819 1.07498 0.73227 0.75953 0.74416 1.93426 1.59266 1.87629 1.58462 1.93445 1.61524 1.54177 1.87259 1.51861 1.17223 1.79938 1.20416 1.19450 0.92812 1.45596 0.82946 0.87624 1.25318 0.95732 0.96859 0.99673 1.69691 1.06236 1.46621 1.28442 0.85910 0.79885 0.78133 0.81195 1.18912 1.20316 1.20446 0.89017 0.90752 0.89691 0.84927 0.84944 0.83658 0.75171 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.60 36.01 0.31 -2.03 15 2 C 0.03 0.47 5.87 -104.63 -0.61 -0.14 15 3 C -0.12 -1.90 9.42 -39.56 -0.37 -2.27 15 4 C -0.05 -0.77 6.22 -39.52 -0.25 -1.02 15 5 Br -0.06 -0.76 33.70 -68.01 -2.29 -3.06 15 6 C -0.13 -1.95 9.79 -39.56 -0.39 -2.34 15 7 C -0.02 -0.36 9.55 -39.59 -0.38 -0.74 15 8 C -0.64 -12.44 5.79 -39.58 -0.23 -12.67 15 9 S 2.60 56.08 4.90 -107.50 -0.53 55.55 15 10 O -1.00 -22.57 16.46 -57.17 -0.94 -23.51 15 11 O -0.97 -23.03 16.71 -57.17 -0.96 -23.99 15 12 N -0.94 -21.55 4.53 31.50 0.14 -21.41 15 13 C -0.27 -6.41 9.63 -15.06 -0.14 -6.56 15 14 H 0.11 2.48 7.82 -52.49 -0.41 2.06 15 15 C 0.03 0.80 5.50 -17.43 -0.10 0.70 15 16 N -0.87 -21.70 13.06 55.49 0.72 -20.98 15 17 Si 0.92 18.93 29.55 -169.99 -5.02 13.91 15 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 21 H 0.09 1.45 8.01 -51.93 -0.42 1.03 15 22 H 0.07 1.04 8.05 -51.93 -0.42 0.62 15 23 H 0.08 1.56 5.48 -51.93 -0.28 1.28 15 24 H 0.13 1.77 8.06 -52.49 -0.42 1.35 15 25 H 0.13 1.68 8.06 -52.48 -0.42 1.26 15 26 H 0.15 2.40 7.33 -52.49 -0.38 2.01 15 27 H 0.41 9.44 7.71 -34.47 -0.27 9.17 15 28 H 0.28 6.49 8.31 -40.82 -0.34 6.15 15 LS Contribution 279.44 15.07 4.21 4.21 Total: -1.00 -27.94 279.44 -8.98 -36.92 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -2.16 Total: 9.43 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -2.16 Total: -27.07 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.87 Total: -42.39 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -1.90 Total: -47.50 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 16 Polarization: 56.08 SS G_CDS: -0.53 Total: 55.55 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -2.29 Total: -3.06 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.94 -8.98 -36.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128903525.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.989 kcal (2) G-P(sol) polarization free energy of solvation -27.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds