Wall clock time and date at job start Tue Mar 31 2020 12:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38239 * 119.99429 * 2 1 4 4 C 1.38308 * 119.99122 * 179.97438 * 3 2 1 5 5 Br 1.89101 * 120.01032 * 179.97438 * 4 3 2 6 6 C 1.38346 * 119.97838 * 359.97438 * 4 3 2 7 7 C 1.38201 * 119.99180 * 359.75192 * 6 4 3 8 8 C 1.38223 * 119.99801 * 179.97438 * 2 1 3 9 9 S 1.76203 * 119.98809 * 0.02562 * 8 2 1 10 10 O 1.42098 * 106.39855 * 311.44525 * 9 8 2 11 11 O 1.42094 * 106.40082 * 178.52719 * 9 8 2 12 12 N 1.65595 * 107.21766 * 64.98539 * 9 8 2 13 13 C 1.36937 * 120.00543 * 63.25216 * 12 9 8 14 14 H 1.07997 * 119.99260 * 5.05842 * 13 12 9 15 15 C 1.38810 * 120.00102 * 185.05476 * 13 12 9 16 16 N 1.31615 * 120.00107 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99709 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47496 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47101 * 120.00377 * 17 15 13 20 20 H 1.48498 * 109.47388 * 240.00011 * 17 15 13 21 21 H 1.09002 * 109.46755 * 264.37381 * 1 2 3 22 22 H 1.08997 * 109.47261 * 24.37353 * 1 2 3 23 23 H 1.09001 * 109.46482 * 144.37677 * 1 2 3 24 24 H 1.08001 * 120.00366 * 359.95722 * 3 2 1 25 25 H 1.08004 * 120.00652 * 179.97438 * 6 4 3 26 26 H 1.07991 * 119.99461 * 180.27223 * 7 6 4 27 27 H 0.97014 * 119.99903 * 243.25247 * 12 9 8 28 28 H 0.97004 * 119.99849 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5811 1.1972 0.0005 5 35 4.5270 2.8346 -0.0002 6 6 4.2724 -0.0012 0.0016 7 6 3.5807 -1.1977 0.0073 8 6 2.1981 -1.1971 0.0005 9 16 1.3167 -2.7228 0.0005 10 8 0.3343 -2.6186 1.0220 11 8 2.2959 -3.7519 -0.0339 12 7 0.4929 -2.8130 -1.4331 13 6 1.1806 -2.8556 -2.6166 14 1 2.2590 -2.9129 -2.6125 15 6 0.4915 -2.8253 -3.8212 16 7 -0.8228 -2.7550 -3.8260 17 14 1.4297 -2.8827 -5.4354 18 1 2.8868 -2.9587 -5.1588 19 1 1.0103 -4.0785 -6.2095 20 1 1.1380 -1.6570 -6.2215 21 1 -0.3633 -0.1008 1.0228 22 1 -0.3633 0.9360 -0.4241 23 1 -0.3632 -0.8354 -0.5986 24 1 1.6580 2.1326 -0.0007 25 1 5.3524 -0.0018 0.0016 26 1 4.1202 -2.1332 0.0126 27 1 -0.4770 -2.8357 -1.4347 28 1 -1.3042 -2.7334 -4.6678 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128903525.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:11 Heat of formation + Delta-G solvation = -68.968048 kcal Electronic energy + Delta-G solvation = -17146.705172 eV Core-core repulsion = 14142.043252 eV Total energy + Delta-G solvation = -3004.661920 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 318.966 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43705 -38.08084 -36.68601 -36.53970 -34.32652 -33.16153 -32.80070 -30.59033 -28.11529 -26.41541 -24.00360 -22.76597 -20.28556 -20.03529 -18.79164 -18.09942 -17.10361 -16.56299 -16.37467 -15.91214 -15.58745 -15.32451 -15.01308 -14.30796 -13.84282 -13.60388 -13.43909 -13.28488 -13.07505 -12.97881 -12.92833 -12.78273 -12.46130 -12.31358 -12.09603 -11.97665 -11.77872 -11.50030 -11.40362 -10.18844 -10.06415 -9.88501 -8.33122 -5.87683 -0.48749 -0.20418 0.17087 0.38634 1.48620 1.50693 1.61256 2.15938 2.33957 2.66995 2.93122 3.22518 3.49797 3.70530 3.78998 4.07601 4.25550 4.34466 4.53654 4.69633 4.74180 4.88850 4.97539 5.10211 5.13991 5.22234 5.62259 5.65796 6.76004 6.93498 7.33189 8.84536 Molecular weight = 318.97amu Principal moments of inertia in cm(-1) A = 0.016033 B = 0.005292 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.961548 B = 5290.033192 C = 6131.628634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.017 3.983 3 C -0.119 4.119 4 C -0.050 4.050 5 Br -0.026 7.026 6 C -0.121 4.121 7 C -0.030 4.030 8 C -0.667 4.667 9 S 2.658 3.342 10 O -1.005 7.005 11 O -0.997 6.997 12 N -0.966 5.966 13 C -0.305 4.305 14 H 0.103 0.897 15 C -0.009 4.009 16 N -0.917 5.917 17 Si 0.976 3.024 18 H -0.260 1.260 19 H -0.280 1.280 20 H -0.277 1.277 21 H 0.098 0.902 22 H 0.102 0.898 23 H 0.062 0.938 24 H 0.161 0.839 25 H 0.164 0.836 26 H 0.151 0.849 27 H 0.409 0.591 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.773 12.382 5.445 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 C -0.139 4.139 4 C -0.130 4.130 5 Br 0.060 6.940 6 C -0.142 4.142 7 C -0.050 4.050 8 C -0.753 4.753 9 S 2.751 3.249 10 O -0.995 6.995 11 O -0.987 6.987 12 N -0.719 5.719 13 C -0.441 4.441 14 H 0.121 0.879 15 C -0.212 4.212 16 N -0.560 5.560 17 Si 0.800 3.200 18 H -0.184 1.184 19 H -0.205 1.205 20 H -0.202 1.202 21 H 0.117 0.883 22 H 0.121 0.879 23 H 0.081 0.919 24 H 0.178 0.822 25 H 0.182 0.818 26 H 0.169 0.831 27 H 0.245 0.755 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.221 12.412 6.095 16.620 hybrid contribution -0.256 0.071 -1.089 1.121 sum 8.965 12.482 5.006 16.163 Atomic orbital electron populations 1.21311 0.89520 1.05140 1.04429 1.19702 0.96709 0.91451 0.90707 1.21336 0.92484 0.98845 1.01252 1.22207 0.95073 0.92857 1.02821 1.96718 1.74527 1.25362 1.97388 1.21446 1.01633 0.90207 1.00889 1.21156 0.91904 0.99871 0.92083 1.31363 1.07091 1.21372 1.15442 1.03720 0.72770 0.75469 0.72940 1.93445 1.59993 1.88074 1.57959 1.93439 1.62310 1.55605 1.87388 1.51315 1.16803 1.83962 1.19828 1.19454 0.92600 1.48427 0.83591 0.87892 1.25906 0.96378 0.96962 1.01938 1.69774 1.07203 1.50414 1.28560 0.85111 0.78944 0.77833 0.78079 1.18374 1.20537 1.20249 0.88318 0.87899 0.91875 0.82150 0.81846 0.83102 0.75550 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 8.60 71.24 0.61 -4.10 15 2 C 0.02 0.56 5.87 -19.87 -0.12 0.44 15 3 C -0.12 -3.35 9.42 22.29 0.21 -3.14 15 4 C -0.05 -1.33 6.22 22.31 0.14 -1.19 15 5 Br -0.03 -0.55 33.70 -20.37 -0.69 -1.23 15 6 C -0.12 -3.33 9.79 22.29 0.22 -3.11 15 7 C -0.03 -0.99 9.55 22.27 0.21 -0.78 15 8 C -0.67 -24.92 5.79 22.27 0.13 -24.79 15 9 S 2.66 114.76 4.90 -56.49 -0.28 114.48 15 10 O -1.01 -45.03 16.46 -128.00 -2.11 -47.13 15 11 O -1.00 -47.10 16.71 -128.00 -2.14 -49.24 15 12 N -0.97 -45.56 4.53 -54.27 -0.25 -45.80 15 13 C -0.30 -15.20 9.63 84.03 0.81 -14.40 15 14 H 0.10 4.98 7.82 -2.91 -0.02 4.96 15 15 C -0.01 -0.44 5.50 84.86 0.47 0.03 15 16 N -0.92 -48.03 13.06 21.65 0.28 -47.74 15 17 Si 0.98 39.85 29.55 68.60 2.03 41.88 15 18 H -0.26 -10.17 7.11 99.48 0.71 -9.47 15 19 H -0.28 -11.34 7.11 99.48 0.71 -10.63 15 20 H -0.28 -11.05 7.11 99.48 0.71 -10.34 15 21 H 0.10 2.97 8.01 -2.39 -0.02 2.95 15 22 H 0.10 2.64 8.05 -2.39 -0.02 2.62 15 23 H 0.06 2.33 5.48 -2.39 -0.01 2.32 15 24 H 0.16 3.59 8.06 -2.91 -0.02 3.56 15 25 H 0.16 3.42 8.06 -2.91 -0.02 3.40 15 26 H 0.15 4.73 7.33 -2.92 -0.02 4.71 15 27 H 0.41 19.65 7.71 -96.73 -0.75 18.91 15 28 H 0.27 13.52 8.31 -92.71 -0.77 12.75 15 Total: -1.00 -60.08 279.44 0.00 -60.08 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.46 Total: 25.75 kcal Atomic # 6 Polarization: -53.72 SS G_CDS: 2.68 Total: -51.04 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: 0.04 Total: -93.55 kcal Atomic # 8 Polarization: -92.13 SS G_CDS: -4.25 Total: -96.38 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 16 Polarization: 114.76 SS G_CDS: -0.28 Total: 114.48 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -0.69 Total: -1.23 kcal Total: -60.08 0.00 -60.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128903525.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.890 kcal (2) G-P(sol) polarization free energy of solvation -60.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds