Wall clock time and date at job start Tue Mar 31 2020 12:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35788 * 116.99688 * 2 1 4 4 C 1.38014 * 123.47394 * 359.97438 * 3 2 1 5 5 C 1.33617 * 115.08900 * 180.02562 * 4 3 2 6 6 S 1.70578 * 111.14234 * 359.97438 * 5 4 3 7 7 C 1.37271 * 123.46693 * 179.97438 * 3 2 1 8 8 C 1.41717 * 125.47925 * 359.96896 * 7 3 2 9 9 O 1.21776 * 120.00124 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99910 * 180.02562 * 8 7 3 11 11 S 1.65602 * 119.99847 * 180.02562 * 10 8 7 12 12 O 1.42101 * 104.27945 * 181.07550 * 11 10 8 13 13 O 1.42109 * 104.27753 * 308.93172 * 11 10 8 14 14 C 1.81402 * 104.45139 * 65.00205 * 11 10 8 15 15 C 1.53001 * 109.47165 * 179.97438 * 14 11 10 16 16 C 1.50697 * 109.46685 * 180.02562 * 15 14 11 17 17 H 1.07994 * 120.00634 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99639 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99901 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47290 * 59.99361 * 20 18 16 22 22 H 1.48494 * 109.47176 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46810 * 299.99829 * 20 18 16 24 24 H 1.09007 * 109.47002 * 60.00965 * 1 2 3 25 25 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47470 * 300.00656 * 1 2 3 27 27 H 1.08000 * 122.45707 * 0.02562 * 4 3 2 28 28 H 1.07997 * 124.42778 * 180.26429 * 5 4 3 29 29 H 0.96996 * 120.00207 * 0.02562 * 10 8 7 30 30 H 1.08998 * 109.46964 * 300.00460 * 14 11 10 31 31 H 1.09003 * 109.46662 * 59.99678 * 14 11 10 32 32 H 1.08996 * 109.46918 * 300.00089 * 15 14 11 33 33 H 1.08996 * 109.46847 * 60.00240 * 15 14 11 34 34 H 0.97005 * 119.99691 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3651 2.4108 -0.0005 5 6 2.1388 3.5002 -0.0010 6 16 3.7922 3.0806 -0.0001 7 6 3.4093 1.3646 0.0005 8 6 4.3567 0.3106 0.0017 9 8 3.9793 -0.8472 0.0019 10 7 5.6752 0.5897 0.0026 11 16 6.7822 -0.6420 0.0034 12 8 8.0405 0.0177 0.0302 13 8 6.3721 -1.4811 1.0745 14 6 6.5338 -1.4749 -1.5888 15 6 7.5111 -2.6459 -1.7097 16 6 7.3051 -3.3374 -3.0328 17 1 6.5523 -2.9780 -3.7186 18 6 8.0772 -4.4297 -3.3673 19 7 8.9937 -4.8677 -2.5320 20 14 7.8224 -5.2864 -5.0076 21 1 8.0651 -4.3238 -6.1118 22 1 8.7700 -6.4238 -5.1244 23 1 6.4290 -5.7932 -5.0901 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2865 2.4659 -0.0005 28 1 1.7661 4.5138 0.0027 29 1 5.9758 1.5119 0.0029 30 1 5.5111 -1.8470 -1.6485 31 1 6.7114 -0.7686 -2.3998 32 1 8.5337 -2.2733 -1.6502 33 1 7.3339 -3.3522 -0.8987 34 1 9.5371 -5.6360 -2.7675 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181269568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:01 Heat of formation + Delta-G solvation = -110.472319 kcal Electronic energy + Delta-G solvation = -22226.293144 eV Core-core repulsion = 18572.135950 eV Total energy + Delta-G solvation = -3654.157194 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.66708 -39.33430 -36.62225 -36.32892 -35.52005 -34.31462 -33.82320 -31.11977 -30.60454 -27.45468 -25.58046 -25.29937 -22.65833 -21.56909 -20.12990 -19.45024 -19.13538 -17.70026 -16.93955 -16.55441 -16.37803 -16.24907 -15.63126 -15.42350 -14.94647 -14.74195 -14.51501 -14.34306 -14.01030 -13.38559 -13.15516 -13.03975 -12.47806 -12.21924 -11.92287 -11.73156 -11.63501 -11.52113 -11.46717 -11.42056 -11.01553 -10.93595 -10.75351 -10.37354 -10.32644 -10.19848 -9.64560 -9.27766 -9.11841 -8.47207 -8.43932 -6.06441 -4.11505 0.06354 0.60519 1.02655 1.36034 1.90568 2.78503 2.95372 3.11512 3.32517 3.36602 3.39126 4.10009 4.19371 4.42455 4.46229 4.71074 4.74809 4.84263 4.84556 4.99809 5.11700 5.22397 5.28759 5.34479 5.62611 5.71965 5.82978 6.54696 6.70124 6.91285 7.35390 7.42493 7.62945 7.86790 8.23350 8.91187 9.52515 11.04740 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.017148 B = 0.003660 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.475437 B = 7649.157429 C = 8490.464468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.268 6.268 3 C 0.202 3.798 4 C -0.216 4.216 5 C -0.188 4.188 6 S 0.235 5.765 7 C -0.337 4.337 8 C 0.614 3.386 9 O -0.473 6.473 10 N -1.061 6.061 11 S 2.568 3.432 12 O -0.955 6.955 13 O -0.936 6.936 14 C -0.575 4.575 15 C 0.030 3.970 16 C -0.518 4.518 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.901 3.099 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.058 0.942 25 H 0.107 0.893 26 H 0.057 0.943 27 H 0.153 0.847 28 H 0.177 0.823 29 H 0.421 0.579 30 H 0.133 0.867 31 H 0.121 0.879 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.447 20.538 4.735 27.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.178 6.178 3 C 0.140 3.860 4 C -0.250 4.250 5 C -0.326 4.326 6 S 0.500 5.500 7 C -0.459 4.459 8 C 0.403 3.597 9 O -0.346 6.346 10 N -0.822 5.822 11 S 2.668 3.332 12 O -0.946 6.946 13 O -0.926 6.926 14 C -0.710 4.710 15 C -0.010 4.010 16 C -0.558 4.558 17 H 0.080 0.920 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.729 3.271 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.076 0.924 25 H 0.125 0.875 26 H 0.076 0.924 27 H 0.171 0.829 28 H 0.195 0.805 29 H 0.255 0.745 30 H 0.151 0.849 31 H 0.140 0.860 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.591 20.016 5.530 25.967 hybrid contribution -1.983 -0.469 -1.417 2.482 sum -17.574 19.547 4.113 26.605 Atomic orbital electron populations 1.23249 0.77899 1.04884 1.01344 1.86376 1.21296 1.23841 1.86336 1.18351 0.90169 0.85741 0.91705 1.20081 1.02345 0.90776 1.11763 1.25102 0.99063 1.03909 1.04565 1.83049 1.03487 0.94996 1.68468 1.22634 0.95266 0.98472 1.29525 1.15359 0.80922 0.88438 0.75022 1.91082 1.78709 1.19429 1.45402 1.55363 1.18965 1.26019 1.81857 1.06631 0.72895 0.74074 0.79552 1.93583 1.39039 1.73725 1.88222 1.93597 1.81216 1.66318 1.51501 1.30337 1.11981 1.12119 1.16544 1.18989 0.92206 0.89724 1.00036 1.20951 1.19879 1.13388 1.01560 0.92007 1.25058 0.94982 0.96903 0.97502 1.69949 1.21671 1.25379 1.35928 0.86508 0.78126 0.79029 0.83481 1.20098 1.21090 1.20048 0.92351 0.87482 0.92406 0.82901 0.80540 0.74488 0.84921 0.86039 0.94749 0.94539 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.94 101.05 1.00 1.16 16 2 O -0.27 -3.45 9.36 -36.59 -0.34 -3.79 16 3 C 0.20 2.35 6.70 -40.02 -0.27 2.08 16 4 C -0.22 -1.64 9.17 -41.28 -0.38 -2.02 16 5 C -0.19 -1.15 10.90 29.11 0.32 -0.83 16 6 S 0.23 1.84 22.00 -107.50 -2.37 -0.53 16 7 C -0.34 -4.30 6.28 -38.61 -0.24 -4.54 16 8 C 0.61 10.04 7.33 -14.93 -0.11 9.93 16 9 O -0.47 -9.58 13.94 -22.41 -0.31 -9.89 16 10 N -1.06 -16.03 5.59 29.12 0.16 -15.87 16 11 S 2.57 50.56 5.11 -107.50 -0.55 50.01 16 12 O -0.96 -19.88 18.08 -57.54 -1.04 -20.92 16 13 O -0.94 -21.85 17.04 -64.79 -1.10 -22.95 16 14 C -0.58 -12.15 5.82 37.16 0.22 -11.94 16 15 C 0.03 0.80 4.98 -27.88 -0.14 0.66 16 16 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 17 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 20 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.06 0.31 7.88 -51.93 -0.41 -0.09 16 25 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.31 7.88 -51.93 -0.41 -0.10 16 27 H 0.15 0.74 6.99 -52.49 -0.37 0.37 16 28 H 0.18 0.49 8.06 -52.49 -0.42 0.06 16 29 H 0.42 4.71 7.76 -34.47 -0.27 4.44 16 30 H 0.13 2.79 7.19 -51.92 -0.37 2.42 16 31 H 0.12 2.21 8.14 -51.92 -0.42 1.79 16 32 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -39.12 325.34 -8.42 -47.54 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -3.48 Total: 0.18 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -0.01 Total: -19.10 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.90 Total: -42.22 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -2.80 Total: -57.55 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 52.40 SS G_CDS: -2.91 Total: 49.49 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -39.12 -8.42 -47.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181269568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.929 kcal (2) G-P(sol) polarization free energy of solvation -39.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds