Wall clock time and date at job start Tue Mar 31 2020 12:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33862 * 122.44346 * 2 1 4 4 S 1.70615 * 110.96447 * 180.02562 * 3 2 1 5 5 C 1.75839 * 91.56358 * 359.97438 * 4 3 2 6 6 C 1.46389 * 125.46264 * 180.02562 * 5 4 3 7 7 O 1.21630 * 119.99739 * 173.06090 * 6 5 4 8 8 O 1.34897 * 120.00298 * 353.06079 * 6 5 4 9 9 C 1.36750 * 109.07338 * 359.97438 * 5 4 3 10 10 S 1.76198 * 123.35773 * 179.73342 * 9 5 4 11 11 O 1.42096 * 106.40634 * 185.00560 * 10 9 5 12 12 O 1.42102 * 106.40109 * 317.92645 * 10 9 5 13 13 N 1.65596 * 107.21685 * 71.46473 * 10 9 5 14 14 C 1.46495 * 120.00067 * 65.00444 * 13 10 9 15 15 H 1.09000 * 109.47297 * 334.99783 * 14 13 10 16 16 C 1.53007 * 109.47492 * 94.99981 * 14 13 10 17 17 C 1.50701 * 109.47478 * 214.99941 * 14 13 10 18 18 H 1.08007 * 119.99835 * 359.97438 * 17 14 13 19 19 C 1.37874 * 120.00166 * 180.02562 * 17 14 13 20 20 N 1.31509 * 120.00554 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99963 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.47409 * 59.99335 * 21 19 17 23 23 H 1.48495 * 109.47246 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47244 * 299.99863 * 21 19 17 25 25 H 1.09001 * 109.47432 * 263.60176 * 1 2 3 26 26 H 1.09001 * 109.47216 * 23.60192 * 1 2 3 27 27 H 1.09000 * 109.47341 * 143.60041 * 1 2 3 28 28 H 1.08002 * 124.52036 * 0.03628 * 3 2 1 29 29 H 0.96697 * 117.00207 * 180.02562 * 8 6 5 30 30 H 0.97004 * 120.00010 * 245.00107 * 13 10 9 31 31 H 1.08999 * 109.46447 * 299.99758 * 16 14 13 32 32 H 1.08991 * 109.46987 * 59.99837 * 16 14 13 33 33 H 1.08994 * 109.47305 * 180.02562 * 16 14 13 34 34 H 0.96994 * 120.00359 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2251 1.1297 0.0000 4 16 3.8971 0.7901 -0.0007 5 6 3.5943 -0.9420 -0.0002 6 6 4.6226 -1.9839 0.0000 7 8 4.3055 -3.1512 0.1276 8 8 5.9218 -1.6495 -0.1412 9 6 2.2442 -1.1596 0.0010 10 16 1.5219 -2.7667 -0.0050 11 8 0.1187 -2.5757 -0.1207 12 8 2.2789 -3.5434 -0.9232 13 7 1.7821 -3.4266 1.4914 14 6 1.1596 -2.8276 2.6744 15 1 0.9544 -1.7743 2.4831 16 6 -0.1507 -3.5542 2.9846 17 6 2.0933 -2.9517 3.8508 18 1 3.0543 -3.4295 3.7294 19 6 1.7205 -2.4563 5.0822 20 7 0.5502 -1.8749 5.2303 21 14 2.8782 -2.6095 6.5402 22 1 4.1495 -1.9033 6.2392 23 1 2.2471 -2.0024 7.7394 24 1 3.1589 -4.0444 6.8008 25 1 -0.3634 -0.1145 1.0213 26 1 -0.3634 0.9417 -0.4115 27 1 -0.3634 -0.8272 -0.6098 28 1 1.8024 2.1236 0.0006 29 1 6.5643 -2.3721 -0.1353 30 1 2.3467 -4.2099 1.5845 31 1 -0.8261 -3.4643 2.1337 32 1 0.0545 -4.6074 3.1759 33 1 -0.6141 -3.1082 3.8645 34 1 0.2880 -1.5261 6.0965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226473400.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:52 Heat of formation + Delta-G solvation = -148.676810 kcal Electronic energy + Delta-G solvation = -23814.220943 eV Core-core repulsion = 20158.407078 eV Total energy + Delta-G solvation = -3655.813865 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32449 -39.43652 -38.22150 -37.29333 -36.99727 -36.82809 -34.09751 -32.40736 -30.07269 -29.01284 -27.22621 -26.86039 -22.87397 -22.68278 -21.59100 -19.99738 -19.67908 -19.05689 -18.68391 -17.91900 -17.54096 -17.03623 -16.85303 -16.31173 -16.23845 -15.42872 -15.10679 -14.96248 -14.54412 -14.40259 -14.13354 -13.96758 -13.49506 -13.38885 -13.26406 -13.08931 -12.95906 -12.81329 -12.76180 -12.58509 -12.40427 -12.22107 -12.12340 -12.02143 -11.85090 -11.66331 -11.10114 -10.58510 -10.33575 -10.06175 -9.61509 -8.12864 -6.27043 -1.15546 -0.49519 0.31425 0.69755 0.87173 1.43696 1.45322 1.50698 1.52784 1.77924 2.22182 2.45816 2.79804 3.15791 3.39129 3.94305 3.99682 4.13855 4.44452 4.51743 4.58123 4.80003 4.87829 4.94039 5.12493 5.17897 5.18179 5.39325 5.50059 5.59945 5.77003 6.03081 6.13212 6.42951 6.76641 6.83050 7.41889 8.92088 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.006586 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.130729 B = 4250.447603 C = 4640.980951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.061 4.061 3 C -0.248 4.248 4 S 0.385 5.615 5 C -0.192 4.192 6 C 0.537 3.463 7 O -0.495 6.495 8 O -0.494 6.494 9 C -0.623 4.623 10 S 2.709 3.291 11 O -0.975 6.975 12 O -0.977 6.977 13 N -1.092 6.092 14 C 0.282 3.718 15 H 0.024 0.976 16 C -0.151 4.151 17 C -0.540 4.540 18 H 0.060 0.940 19 C 0.022 3.978 20 N -0.910 5.910 21 Si 0.957 3.043 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.273 1.273 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.216 0.784 29 H 0.442 0.558 30 H 0.414 0.586 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.718 8.679 -9.994 15.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.070 4.070 3 C -0.386 4.386 4 S 0.656 5.344 5 C -0.314 4.314 6 C 0.378 3.622 7 O -0.384 6.384 8 O -0.310 6.310 9 C -0.728 4.728 10 S 2.797 3.203 11 O -0.965 6.965 12 O -0.968 6.968 13 N -0.852 5.852 14 C 0.177 3.823 15 H 0.041 0.959 16 C -0.211 4.211 17 C -0.579 4.579 18 H 0.078 0.922 19 C -0.178 4.178 20 N -0.548 5.548 21 Si 0.782 3.218 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.199 1.199 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.233 0.767 29 H 0.305 0.695 30 H 0.248 0.752 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.037 9.527 -10.546 16.327 hybrid contribution 0.004 -1.364 1.309 1.891 sum 8.041 8.163 -9.236 14.718 Atomic orbital electron populations 1.21183 0.87947 1.05701 1.04084 1.18434 0.98721 0.89682 1.00159 1.25977 0.99643 1.04558 1.08408 1.82447 1.01616 0.91799 1.58496 1.23483 0.93681 1.01354 1.12865 1.19422 0.82745 0.86412 0.73615 1.91063 1.82469 1.20249 1.44659 1.84456 1.15661 1.46046 1.84822 1.30470 1.01510 1.24516 1.16350 1.01194 0.73261 0.73136 0.72720 1.93485 1.30712 1.86077 1.86225 1.93535 1.72535 1.68473 1.62237 1.55342 1.64488 1.41848 1.23534 1.18239 0.90619 0.91330 0.82133 0.95870 1.22136 0.98290 0.99536 1.01106 1.21517 1.02725 1.39209 0.94449 0.92214 1.25612 0.96695 0.94571 1.00956 1.69972 1.20903 1.38793 1.25162 0.85640 0.79059 0.78488 0.78606 1.19706 1.20673 1.19858 0.91487 0.87936 0.88820 0.76689 0.69505 0.75165 0.94935 0.94668 0.90765 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.08 71.23 0.65 -3.36 16 2 C -0.06 -1.91 5.78 -21.06 -0.12 -2.04 16 3 C -0.25 -5.73 10.65 66.82 0.71 -5.02 16 4 S 0.39 8.42 22.93 -56.49 -1.30 7.13 16 5 C -0.19 -6.26 6.44 24.04 0.15 -6.10 16 6 C 0.54 17.39 8.19 69.94 0.57 17.97 16 7 O -0.50 -19.33 13.30 27.04 0.36 -18.97 16 8 O -0.49 -10.72 13.30 -58.12 -0.77 -11.49 16 9 C -0.62 -22.90 5.79 21.73 0.13 -22.78 16 10 S 2.71 114.21 4.92 -56.49 -0.28 113.93 16 11 O -0.97 -42.64 13.42 -128.00 -1.72 -44.36 16 12 O -0.98 -44.00 15.20 -118.66 -1.80 -45.80 16 13 N -1.09 -49.04 4.96 -172.52 -0.85 -49.89 16 14 C 0.28 14.16 2.76 44.25 0.12 14.28 16 15 H 0.02 1.24 7.85 -2.39 -0.02 1.22 16 16 C -0.15 -7.52 9.29 71.98 0.67 -6.86 16 17 C -0.54 -28.67 8.76 25.60 0.22 -28.45 16 18 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 19 C 0.02 1.18 5.30 84.65 0.45 1.63 16 20 N -0.91 -49.70 11.32 21.45 0.24 -49.46 16 21 Si 0.96 41.79 29.54 68.60 2.03 43.81 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.10 2.26 8.09 -2.39 -0.02 2.24 16 27 H 0.09 3.20 5.41 -2.39 -0.01 3.18 16 28 H 0.22 3.13 8.06 -2.91 -0.02 3.10 16 29 H 0.44 5.22 9.11 -74.06 -0.67 4.55 16 30 H 0.41 18.01 8.67 -96.74 -0.84 17.17 16 31 H 0.03 1.52 7.64 -2.39 -0.02 1.50 16 32 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 3.95 6.07 -2.39 -0.01 3.93 16 34 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -71.16 315.55 -0.87 -72.03 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.33 Total: 23.79 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 3.55 Total: -40.73 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -0.61 Total: -99.35 kcal Atomic # 8 Polarization: -116.69 SS G_CDS: -3.93 Total: -120.62 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 122.63 SS G_CDS: -1.57 Total: 121.06 kcal Total: -71.16 -0.87 -72.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226473400.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.646 kcal (2) G-P(sol) polarization free energy of solvation -71.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds