Wall clock time and date at job start Tue Mar 31 2020 12:27:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46894 * 1
3 3 C 1.46903 * 111.00092 * 2 1
4 4 C 1.50693 * 109.47108 * 293.95088 * 3 2 1
5 5 H 1.08000 * 120.00199 * 359.97438 * 4 3 2
6 6 C 1.37880 * 119.99910 * 180.02562 * 4 3 2
7 7 N 1.31510 * 120.00060 * 359.97438 * 6 4 3
8 8 Si 1.86803 * 119.99722 * 180.02562 * 6 4 3
9 9 H 1.48497 * 109.47520 * 60.00017 * 8 6 4
10 10 H 1.48500 * 109.46916 * 179.97438 * 8 6 4
11 11 H 1.48501 * 109.46919 * 299.99307 * 8 6 4
12 12 C 1.46903 * 111.00011 * 123.95476 * 2 1 3
13 13 C 1.50693 * 109.47064 * 66.04453 * 12 2 1
14 14 C 1.38453 * 120.02285 * 90.00820 * 13 12 2
15 15 F 1.35104 * 119.99914 * 359.97438 * 14 13 12
16 16 C 1.38436 * 119.99591 * 179.72477 * 14 13 12
17 17 C 1.38234 * 120.03440 * 0.26859 * 16 14 13
18 18 C 1.38264 * 120.03808 * 0.02562 * 17 16 14
19 19 Br 1.89097 * 119.99499 * 179.97438 * 18 17 16
20 20 C 1.38387 * 120.02412 * 270.25451 * 13 12 2
21 21 F 1.35098 * 120.01244 * 0.02916 * 20 13 12
22 22 H 1.08996 * 109.47436 * 296.04682 * 1 2 3
23 23 H 1.09008 * 109.47202 * 56.04608 * 1 2 3
24 24 H 1.08997 * 109.47096 * 176.04359 * 1 2 3
25 25 H 1.08994 * 109.46965 * 53.95656 * 3 2 1
26 26 H 1.09003 * 109.47038 * 173.94934 * 3 2 1
27 27 H 0.97006 * 119.99825 * 180.02562 * 7 6 4
28 28 H 1.09001 * 109.46602 * 306.04510 * 12 2 1
29 29 H 1.09001 * 109.47402 * 186.04788 * 12 2 1
30 30 H 1.08001 * 119.98509 * 180.29339 * 16 14 13
31 31 H 1.07999 * 119.98342 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6370 2.0471 -1.2984
5 1 1.0747 1.5112 -2.0488
6 6 2.0278 3.3491 -1.5289
7 7 2.7129 4.0015 -0.6154
8 14 1.5828 4.1868 -3.1381
9 1 0.1056 4.2244 -3.2848
10 1 2.1151 5.5732 -3.1382
11 1 2.1737 3.4292 -4.2704
12 6 1.9954 -0.7660 1.1376
13 6 1.6369 -2.2204 0.9729
14 6 2.4949 -3.0734 0.2998
15 9 3.6538 -2.6019 -0.2101
16 6 2.1676 -4.4106 0.1537
17 6 0.9818 -4.8936 0.6747
18 6 0.1211 -4.0417 1.3419
19 35 -1.5010 -4.7036 2.0535
20 6 0.4474 -2.7032 1.4898
21 9 -0.3933 -1.8706 2.1419
22 1 -0.3634 0.4512 0.9232
23 1 -0.3634 0.5740 -0.8525
24 1 -0.3633 -1.0252 -0.0709
25 1 1.5611 1.9273 0.8309
26 1 3.0797 1.3444 0.1083
27 1 2.9875 4.9177 -0.7774
28 1 1.5610 -0.3872 2.0628
29 1 3.0797 -0.6611 1.1757
30 1 2.8392 -5.0769 -0.3673
31 1 0.7275 -5.9370 0.5607
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000230313082.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:27:34
Heat of formation + Delta-G solvation = -54.762013 kcal
Electronic energy + Delta-G solvation = -18921.478170 eV
Core-core repulsion = 15499.424978 eV
Total energy + Delta-G solvation = -3422.053192 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 319.008 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-49.12085 -48.93795 -39.16211 -36.59038 -32.97819 -32.22839 -31.29991 -29.13267
-27.33076 -26.78471 -24.19509 -22.81106 -21.84906 -20.23310 -18.24168 -17.55615
-16.50612 -16.29531 -15.78674 -15.64023 -15.28785 -14.82110 -14.44903 -14.21330
-13.98714 -13.84896 -12.99519 -12.70139 -12.66576 -12.27090 -11.94442 -11.51541
-11.40686 -11.14039 -10.90007 -10.84269 -10.68942 -10.54276 -10.47081 -9.91638
-9.30405 -9.01774 -8.72723 -8.44302 -7.35342 -6.03798 -4.05297 0.61368
0.78556 1.28067 3.05445 3.33840 3.37564 3.40804 3.72585 4.17499
4.33631 4.42703 4.58121 4.79189 5.03590 5.27658 5.33129 5.47692
5.62085 5.64716 5.77011 5.95966 6.02775 6.10580 6.33380 6.49724
6.72010 7.20650 7.28198 7.74656 8.00738 8.12116 8.47699 9.01181
9.58686 11.07132
Molecular weight = 319.01amu
Principal moments of inertia in cm(-1)
A = 0.023171 B = 0.003772 C = 0.003472
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1208.134898 B = 7421.063936 C = 8062.908466
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 N -0.532 5.532
3 C 0.194 3.806
4 C -0.508 4.508
5 H 0.063 0.937
6 C 0.056 3.944
7 N -0.899 5.899
8 Si 0.899 3.101
9 H -0.277 1.277
10 H -0.288 1.288
11 H -0.276 1.276
12 C 0.089 3.911
13 C -0.130 4.130
14 C 0.167 3.833
15 F -0.115 7.115
16 C -0.163 4.163
17 C -0.042 4.042
18 C -0.148 4.148
19 Br -0.031 7.031
20 C 0.162 3.838
21 F -0.113 7.113
22 H 0.017 0.983
23 H 0.077 0.923
24 H 0.039 0.961
25 H -0.006 1.006
26 H 0.032 0.968
27 H 0.262 0.738
28 H 0.045 0.955
29 H 0.089 0.911
30 H 0.150 0.850
31 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.235 -21.186 6.146 22.672
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 N -0.257 5.257
3 C 0.069 3.931
4 C -0.547 4.547
5 H 0.081 0.919
6 C -0.145 4.145
7 N -0.538 5.538
8 Si 0.727 3.273
9 H -0.203 1.203
10 H -0.213 1.213
11 H -0.201 1.201
12 C -0.039 4.039
13 C -0.133 4.133
14 C 0.146 3.854
15 F -0.093 7.093
16 C -0.183 4.183
17 C -0.062 4.062
18 C -0.229 4.229
19 Br 0.055 6.945
20 C 0.140 3.860
21 F -0.091 7.091
22 H 0.036 0.964
23 H 0.096 0.904
24 H 0.058 0.942
25 H 0.012 0.988
26 H 0.050 0.950
27 H 0.072 0.928
28 H 0.063 0.937
29 H 0.108 0.892
30 H 0.168 0.832
31 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -5.582 -21.393 6.027 22.916
hybrid contribution -0.070 1.324 -0.236 1.347
sum -5.652 -20.068 5.791 21.638
Atomic orbital electron populations
1.22293 0.88579 0.99378 1.01041 1.62239 1.07248 1.18116 1.38062
1.19765 0.95497 0.80852 0.96966 1.21083 1.35065 0.96950 1.01572
0.91869 1.24976 0.95222 0.97273 0.97031 1.69946 1.38219 1.11527
1.34101 0.86540 0.78713 0.78323 0.83723 1.20264 1.21321 1.20123
1.20929 1.01561 0.86875 0.94551 1.20070 0.93643 0.98689 1.00906
1.17251 0.82861 0.91394 0.93910 1.91586 1.44851 1.88905 1.83946
1.21172 0.98862 0.94126 1.04161 1.20744 0.91717 0.99655 0.94088
1.21852 0.97408 0.94236 1.09403 1.96737 1.26898 1.86584 1.84305
1.16855 0.88306 0.86215 0.94618 1.91583 1.69014 1.70655 1.77851
0.96447 0.90395 0.94188 0.98829 0.94990 0.92820 0.93719 0.89244
0.83222 0.83296
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.73 8.22 60.06 0.49 1.22 16
2 N -0.53 -11.74 4.74 -245.83 -1.17 -12.91 16
3 C 0.19 5.09 4.72 -4.98 -0.02 5.06 16
4 C -0.51 -14.36 8.46 -34.44 -0.29 -14.65 16
5 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16
6 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
7 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16
8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16
9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16
10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16
11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
12 C 0.09 1.64 4.79 -4.98 -0.02 1.62 16
13 C -0.13 -2.03 4.90 -104.49 -0.51 -2.54 16
14 C 0.17 2.33 7.24 -39.43 -0.29 2.05 16
15 F -0.11 -1.79 16.48 2.25 0.04 -1.75 16
16 C -0.16 -1.71 10.02 -39.51 -0.40 -2.10 16
17 C -0.04 -0.41 9.78 -39.57 -0.39 -0.80 16
18 C -0.15 -1.79 6.23 -39.45 -0.25 -2.04 16
19 Br -0.03 -0.33 33.28 -68.01 -2.26 -2.59 16
20 C 0.16 2.35 5.90 -39.41 -0.23 2.12 16
21 F -0.11 -1.77 14.52 2.25 0.03 -1.73 16
22 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16
23 H 0.08 1.69 6.76 -51.92 -0.35 1.34 16
24 H 0.04 0.73 5.88 -51.93 -0.31 0.43 16
25 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16
26 H 0.03 0.89 7.93 -51.93 -0.41 0.48 16
27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
28 H 0.04 0.82 7.63 -51.93 -0.40 0.42 16
29 H 0.09 1.64 7.43 -51.93 -0.39 1.25 16
30 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16
31 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16
LS Contribution 292.26 15.07 4.40 4.40
Total: -1.00 -29.97 292.26 -8.29 -38.26
By element:
Atomic # 1 Polarization: -2.80 SS G_CDS: -3.05 Total: -5.84 kcal
Atomic # 6 Polarization: -6.54 SS G_CDS: -2.00 Total: -8.54 kcal
Atomic # 7 Polarization: -38.47 SS G_CDS: -0.43 Total: -38.90 kcal
Atomic # 9 Polarization: -3.56 SS G_CDS: 0.07 Total: -3.49 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal
Atomic # 35 Polarization: -0.33 SS G_CDS: -2.26 Total: -2.59 kcal
Total LS contribution 4.40 Total: 4.40 kcal
Total: -29.97 -8.29 -38.26 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000230313082.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.507 kcal
(2) G-P(sol) polarization free energy of solvation -29.968 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.762 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds