Wall clock time and date at job start Tue Mar 31 2020 12:27:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46894 * 1
3 3 C 1.46903 * 111.00092 * 2 1
4 4 C 1.50693 * 109.47108 * 293.95088 * 3 2 1
5 5 H 1.08000 * 120.00199 * 359.97438 * 4 3 2
6 6 C 1.37880 * 119.99910 * 180.02562 * 4 3 2
7 7 N 1.31510 * 120.00060 * 359.97438 * 6 4 3
8 8 Si 1.86803 * 119.99722 * 180.02562 * 6 4 3
9 9 H 1.48497 * 109.47520 * 60.00017 * 8 6 4
10 10 H 1.48500 * 109.46916 * 179.97438 * 8 6 4
11 11 H 1.48501 * 109.46919 * 299.99307 * 8 6 4
12 12 C 1.46903 * 111.00011 * 123.95476 * 2 1 3
13 13 C 1.50693 * 109.47064 * 66.04453 * 12 2 1
14 14 C 1.38453 * 120.02285 * 90.00820 * 13 12 2
15 15 F 1.35104 * 119.99914 * 359.97438 * 14 13 12
16 16 C 1.38436 * 119.99591 * 179.72477 * 14 13 12
17 17 C 1.38234 * 120.03440 * 0.26859 * 16 14 13
18 18 C 1.38264 * 120.03808 * 0.02562 * 17 16 14
19 19 Br 1.89097 * 119.99499 * 179.97438 * 18 17 16
20 20 C 1.38387 * 120.02412 * 270.25451 * 13 12 2
21 21 F 1.35098 * 120.01244 * 0.02916 * 20 13 12
22 22 H 1.08996 * 109.47436 * 296.04682 * 1 2 3
23 23 H 1.09008 * 109.47202 * 56.04608 * 1 2 3
24 24 H 1.08997 * 109.47096 * 176.04359 * 1 2 3
25 25 H 1.08994 * 109.46965 * 53.95656 * 3 2 1
26 26 H 1.09003 * 109.47038 * 173.94934 * 3 2 1
27 27 H 0.97006 * 119.99825 * 180.02562 * 7 6 4
28 28 H 1.09001 * 109.46602 * 306.04510 * 12 2 1
29 29 H 1.09001 * 109.47402 * 186.04788 * 12 2 1
30 30 H 1.08001 * 119.98509 * 180.29339 * 16 14 13
31 31 H 1.07999 * 119.98342 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6370 2.0471 -1.2984
5 1 1.0747 1.5112 -2.0488
6 6 2.0278 3.3491 -1.5289
7 7 2.7129 4.0015 -0.6154
8 14 1.5828 4.1868 -3.1381
9 1 0.1056 4.2244 -3.2848
10 1 2.1151 5.5732 -3.1382
11 1 2.1737 3.4292 -4.2704
12 6 1.9954 -0.7660 1.1376
13 6 1.6369 -2.2204 0.9729
14 6 2.4949 -3.0734 0.2998
15 9 3.6538 -2.6019 -0.2101
16 6 2.1676 -4.4106 0.1537
17 6 0.9818 -4.8936 0.6747
18 6 0.1211 -4.0417 1.3419
19 35 -1.5010 -4.7036 2.0535
20 6 0.4474 -2.7032 1.4898
21 9 -0.3933 -1.8706 2.1419
22 1 -0.3634 0.4512 0.9232
23 1 -0.3634 0.5740 -0.8525
24 1 -0.3633 -1.0252 -0.0709
25 1 1.5611 1.9273 0.8309
26 1 3.0797 1.3444 0.1083
27 1 2.9875 4.9177 -0.7774
28 1 1.5610 -0.3872 2.0628
29 1 3.0797 -0.6611 1.1757
30 1 2.8392 -5.0769 -0.3673
31 1 0.7275 -5.9370 0.5607
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000230313082.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:27:33
Heat of formation + Delta-G solvation = -72.795798 kcal
Electronic energy + Delta-G solvation = -18922.260174 eV
Core-core repulsion = 15499.424978 eV
Total energy + Delta-G solvation = -3422.835196 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 319.008 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-50.26013 -50.06531 -40.23042 -38.24193 -34.88865 -33.46392 -32.47944 -30.11968
-29.28908 -28.28592 -25.93740 -23.82297 -23.35332 -21.87794 -19.30643 -18.70494
-18.51350 -17.55139 -16.95011 -16.76574 -16.60950 -16.43600 -15.90013 -15.68411
-15.56373 -15.30765 -14.27349 -13.98921 -13.87535 -13.65867 -13.58117 -13.16095
-12.91955 -12.68120 -12.64370 -12.49883 -12.32941 -11.93543 -11.77457 -11.43874
-11.34588 -10.63949 -10.10236 -9.70933 -9.17808 -8.22575 -6.33222 -0.37789
-0.21232 0.35753 1.40717 1.44172 1.52111 2.07297 2.39669 2.69872
3.09830 3.13302 3.23557 3.40073 3.56960 3.84860 4.12709 4.33867
4.42045 4.49275 4.60298 4.65012 4.74171 4.82997 4.89476 4.96095
5.10556 5.19412 5.50488 5.59818 5.96806 6.17294 6.46400 6.80628
7.36203 8.88612
Molecular weight = 319.01amu
Principal moments of inertia in cm(-1)
A = 0.023171 B = 0.003772 C = 0.003472
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1208.134898 B = 7421.063936 C = 8062.908466
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.046 3.954
2 N -0.539 5.539
3 C 0.209 3.791
4 C -0.526 4.526
5 H 0.063 0.937
6 C 0.004 3.996
7 N -0.934 5.934
8 Si 0.971 3.029
9 H -0.267 1.267
10 H -0.282 1.282
11 H -0.268 1.268
12 C 0.093 3.907
13 C -0.152 4.152
14 C 0.149 3.851
15 F -0.130 7.130
16 C -0.141 4.141
17 C -0.022 4.022
18 C -0.149 4.149
19 Br -0.017 7.017
20 C 0.145 3.855
21 F -0.127 7.127
22 H 0.013 0.987
23 H 0.062 0.938
24 H 0.063 0.937
25 H -0.035 1.035
26 H 0.007 0.993
27 H 0.266 0.734
28 H 0.039 0.961
29 H 0.081 0.919
30 H 0.188 0.812
31 H 0.191 0.809
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.019 -23.658 4.949 24.908
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 N -0.263 5.263
3 C 0.083 3.917
4 C -0.565 4.565
5 H 0.081 0.919
6 C -0.195 4.195
7 N -0.574 5.574
8 Si 0.795 3.205
9 H -0.192 1.192
10 H -0.207 1.207
11 H -0.192 1.192
12 C -0.035 4.035
13 C -0.155 4.155
14 C 0.128 3.872
15 F -0.109 7.109
16 C -0.161 4.161
17 C -0.041 4.041
18 C -0.230 4.230
19 Br 0.069 6.931
20 C 0.123 3.877
21 F -0.105 7.105
22 H 0.031 0.969
23 H 0.081 0.919
24 H 0.082 0.918
25 H -0.017 1.017
26 H 0.025 0.975
27 H 0.074 0.926
28 H 0.057 0.943
29 H 0.099 0.901
30 H 0.205 0.795
31 H 0.209 0.791
Dipole moment (debyes) X Y Z Total
from point charges -6.378 -23.892 4.840 25.197
hybrid contribution 0.158 1.962 0.210 1.979
sum -6.219 -21.930 5.050 23.348
Atomic orbital electron populations
1.22195 0.87535 1.00466 1.00067 1.62132 1.08185 1.15720 1.40261
1.19409 0.93833 0.83018 0.95458 1.21384 1.35283 0.97620 1.02171
0.91867 1.25915 0.94838 0.97909 1.00799 1.70077 1.39109 1.11961
1.36241 0.85410 0.78845 0.77191 0.79025 1.19216 1.20682 1.19248
1.20812 1.00858 0.88858 0.92991 1.19796 0.95270 0.96910 1.03562
1.17578 0.82373 0.92795 0.94446 1.91548 1.45690 1.89346 1.84286
1.21564 0.99229 0.92604 1.02659 1.21273 0.90281 1.01075 0.91464
1.22073 0.98327 0.93420 1.09187 1.96764 1.26161 1.85996 1.84229
1.16996 0.88013 0.87234 0.95422 1.91545 1.69334 1.71319 1.78284
0.96889 0.91880 0.91844 1.01702 0.97471 0.92566 0.94265 0.90086
0.79518 0.79141
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 1.90 8.22 127.69 1.05 2.95 16
2 N -0.54 -24.64 4.74 -931.68 -4.42 -29.06 16
3 C 0.21 11.51 4.72 85.55 0.40 11.92 16
4 C -0.53 -30.50 8.46 25.60 0.22 -30.28 16
5 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16
6 C 0.00 0.21 5.46 84.66 0.46 0.67 16
7 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16
8 Si 0.97 44.73 29.54 68.60 2.03 46.76 16
9 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16
10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16
11 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16
12 C 0.09 3.58 4.79 85.55 0.41 3.99 16
13 C -0.15 -4.73 4.90 -19.78 -0.10 -4.83 16
14 C 0.15 3.97 7.24 22.37 0.16 4.13 16
15 F -0.13 -4.03 16.48 44.97 0.74 -3.29 16
16 C -0.14 -2.41 10.02 22.32 0.22 -2.19 16
17 C -0.02 -0.33 9.78 22.27 0.22 -0.11 16
18 C -0.15 -3.20 6.23 22.35 0.14 -3.07 16
19 Br -0.02 -0.32 33.28 -20.37 -0.68 -1.00 16
20 C 0.15 4.08 5.90 22.38 0.13 4.21 16
21 F -0.13 -3.95 14.52 44.97 0.65 -3.30 16
22 H 0.01 0.53 8.08 -2.39 -0.02 0.51 16
23 H 0.06 2.78 6.76 -2.38 -0.02 2.77 16
24 H 0.06 2.33 5.88 -2.39 -0.01 2.31 16
25 H -0.03 -2.07 8.12 -2.39 -0.02 -2.09 16
26 H 0.01 0.42 7.93 -2.39 -0.02 0.41 16
27 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16
28 H 0.04 1.52 7.63 -2.39 -0.02 1.51 16
29 H 0.08 3.17 7.43 -2.39 -0.02 3.15 16
30 H 0.19 1.84 8.06 -2.91 -0.02 1.81 16
31 H 0.19 1.38 8.06 -2.91 -0.02 1.35 16
Total: -1.00 -66.67 292.26 3.09 -63.59
By element:
Atomic # 1 Polarization: -5.66 SS G_CDS: 1.16 Total: -4.50 kcal
Atomic # 6 Polarization: -15.92 SS G_CDS: 3.32 Total: -12.60 kcal
Atomic # 7 Polarization: -81.52 SS G_CDS: -4.14 Total: -85.65 kcal
Atomic # 9 Polarization: -7.99 SS G_CDS: 1.39 Total: -6.59 kcal
Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal
Atomic # 35 Polarization: -0.32 SS G_CDS: -0.68 Total: -1.00 kcal
Total: -66.67 3.09 -63.59 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000230313082.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.209 kcal
(2) G-P(sol) polarization free energy of solvation -66.672 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.881 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.587 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.796 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds