Wall clock time and date at job start Tue Mar 31 2020 12:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 S 1.81401 * 109.46839 * 179.97438 * 16 14 13 18 18 C 1.76199 * 102.99950 * 179.97438 * 17 16 14 19 19 N 1.29644 * 125.41018 * 359.69461 * 18 17 16 20 20 N 1.37762 * 115.61648 * 179.80014 * 19 18 17 21 21 C 1.29645 * 115.60334 * 0.49720 * 20 19 18 22 22 S 1.76201 * 125.40441 * 179.74477 * 21 20 19 23 23 S 1.76032 * 109.19046 * 359.74295 * 21 20 19 24 24 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 26 26 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 27 27 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 28 28 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 29 29 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 30 30 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 31 31 H 1.09005 * 109.47081 * 299.98904 * 16 14 13 32 32 H 1.08997 * 109.47516 * 59.99675 * 16 14 13 33 33 H 1.34505 * 103.00343 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 16 -1.6455 3.9984 2.4962 18 6 -1.9319 4.7357 4.0707 19 7 -1.0901 4.7527 5.0565 20 7 -1.5230 5.3905 6.1983 21 6 -2.7208 5.8836 6.1448 22 16 -3.5308 6.7419 7.4532 23 16 -3.4095 5.5597 4.5575 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 5.8770 0.4827 -2.1133 30 1 2.2720 2.1230 1.9979 31 1 0.0680 2.6142 3.4688 32 1 0.7281 4.1539 2.8669 33 1 -2.6128 6.7310 8.4363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273891692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:36 Heat of formation + Delta-G solvation = 33.522467 kcal Electronic energy + Delta-G solvation = -19144.967419 eV Core-core repulsion = 15972.099930 eV Total energy + Delta-G solvation = -3172.867489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 319.022 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.68099 -39.42190 -35.51898 -32.67135 -32.44068 -31.83561 -29.69440 -27.34916 -26.28219 -22.78820 -22.38970 -21.28121 -20.29178 -19.77078 -18.10013 -17.84652 -17.12321 -16.16623 -15.97412 -15.76235 -15.44347 -15.12037 -14.35946 -13.93037 -13.75314 -13.57869 -13.28004 -12.92951 -12.33937 -12.17268 -12.03376 -11.90843 -11.76911 -11.48503 -11.16167 -11.00279 -10.86085 -10.69230 -10.52708 -10.00035 -9.95950 -9.73727 -9.40720 -9.31047 -8.90814 -8.83233 -8.27071 -8.00909 -6.27078 -4.30690 -0.20876 0.01510 0.45633 0.67482 1.16782 1.62819 1.72189 1.80255 2.90448 3.18998 3.31528 3.35126 3.67327 4.13319 4.25703 4.62435 4.91059 4.99973 5.06330 5.24230 5.88503 5.95464 6.09181 6.56304 6.62058 6.73338 6.85650 7.09552 7.18516 7.25466 7.39872 7.97192 8.37364 8.59615 8.74242 9.32432 10.84811 Molecular weight = 319.02amu Principal moments of inertia in cm(-1) A = 0.037950 B = 0.002511 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.632042 B =11150.382522 C =11573.120000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.244 3.756 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.259 1.259 12 H -0.293 1.293 13 N -0.688 5.688 14 C 0.522 3.478 15 O -0.535 6.535 16 C -0.154 4.154 17 S 0.117 5.883 18 C 0.011 3.989 19 N -0.287 5.287 20 N -0.284 5.284 21 C 0.029 3.971 22 S 0.040 5.960 23 S 0.165 5.835 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.268 0.732 30 H 0.399 0.601 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.829 9.213 14.360 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.140 3.860 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.184 1.184 12 H -0.221 1.221 13 N -0.337 5.337 14 C 0.305 3.695 15 O -0.414 6.414 16 C -0.307 4.307 17 S 0.345 5.655 18 C -0.387 4.387 19 N -0.119 5.119 20 N -0.115 5.115 21 C -0.373 4.373 22 S 0.191 5.809 23 S 0.398 5.602 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.233 0.767 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.041 9.431 13.409 25.892 hybrid contribution 2.202 -0.957 0.929 2.575 sum -17.839 8.474 14.338 24.405 Atomic orbital electron populations 1.21882 0.96841 0.99266 1.02212 1.22308 0.94425 0.99787 1.01350 1.19241 0.95856 0.88570 0.82288 0.92992 1.21015 0.88410 1.40171 1.08030 0.90098 1.24833 0.94887 0.95073 0.97662 1.69863 1.08711 1.44234 1.29823 0.86905 0.80956 0.79977 0.80926 1.20178 1.18385 1.22079 1.46094 1.14053 1.55083 1.18423 1.19315 0.83439 0.79569 0.87211 1.90728 1.51117 1.59866 1.39732 1.24013 0.97982 1.05792 1.02958 1.86497 1.16883 1.63016 0.99098 1.31472 0.97261 1.03817 1.06115 1.75537 1.24487 1.17002 0.94874 1.75499 1.08903 1.10170 1.16879 1.30107 0.98781 1.05522 1.02863 1.86127 1.20864 1.66937 1.06953 1.85580 1.16150 1.54670 1.03762 0.94778 0.93051 0.92738 0.92561 0.92160 0.92177 0.76731 0.85844 0.85717 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.52 37.16 0.32 -2.43 16 2 C -0.14 -2.96 5.11 -26.73 -0.14 -3.10 16 3 C 0.24 5.47 1.83 -69.08 -0.13 5.34 16 4 H 0.05 1.29 6.63 -51.93 -0.34 0.94 16 5 C -0.54 -14.03 9.31 -34.44 -0.32 -14.35 16 6 H 0.08 2.22 7.98 -52.49 -0.42 1.81 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 9 Si 0.88 21.14 24.41 -169.99 -4.15 16.99 16 10 H -0.27 -6.39 6.83 56.52 0.39 -6.00 16 11 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 N -0.69 -12.56 5.02 -54.93 -0.28 -12.83 16 14 C 0.52 8.80 6.42 -10.98 -0.07 8.73 16 15 O -0.54 -10.53 13.00 5.56 0.07 -10.46 16 16 C -0.15 -1.98 6.03 36.01 0.22 -1.76 16 17 S 0.12 1.45 21.30 -107.50 -2.29 -0.84 16 18 C 0.01 0.14 7.82 51.84 0.41 0.54 16 19 N -0.29 -3.98 11.62 31.11 0.36 -3.61 16 20 N -0.28 -3.75 12.11 31.11 0.38 -3.38 16 21 C 0.03 0.29 8.00 51.84 0.41 0.71 16 22 S 0.04 0.26 26.26 -107.50 -2.82 -2.56 16 23 S 0.17 1.55 23.39 -107.50 -2.51 -0.96 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.94 5.65 -51.93 -0.29 0.65 16 26 H 0.05 1.09 7.85 -51.93 -0.41 0.69 16 27 H 0.06 1.26 3.22 -51.93 -0.17 1.10 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 30 H 0.40 6.39 8.54 -40.82 -0.35 6.04 16 31 H 0.12 1.40 8.14 -51.92 -0.42 0.98 16 32 H 0.12 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.10 0.59 9.07 97.61 0.89 1.48 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -30.89 319.83 -7.02 -37.90 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -1.97 Total: 4.26 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 0.60 Total: -4.25 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 1.24 Total: -44.91 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.15 Total: 16.99 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -7.63 Total: -4.36 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.89 -7.02 -37.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273891692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.426 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds