Wall clock time and date at job start Tue Mar 31 2020 13:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29957 * 118.56299 * 2 1 4 4 Br 1.89107 * 118.36791 * 0.38868 * 3 2 1 5 5 C 1.50148 * 123.26847 * 180.36620 * 3 2 1 6 6 N 1.46835 * 110.27193 * 342.94741 * 5 3 2 7 7 C 1.46906 * 111.00032 * 174.33600 * 6 5 3 8 8 C 1.52997 * 109.46848 * 66.04529 * 7 6 5 9 9 C 1.53006 * 109.46931 * 179.97438 * 8 7 6 10 10 S 1.81005 * 109.46998 * 180.02562 * 9 8 7 11 11 C 1.76192 * 99.99933 * 180.02562 * 10 9 8 12 12 H 1.08009 * 120.00256 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00268 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99842 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00312 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.46977 * 89.99687 * 15 13 11 17 17 H 1.48497 * 109.47535 * 209.99605 * 15 13 11 18 18 H 1.48502 * 109.47410 * 330.00145 * 15 13 11 19 19 C 1.47240 * 110.21181 * 50.94576 * 6 5 3 20 20 C 1.50306 * 118.56545 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.46913 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46580 * 119.99625 * 1 2 3 23 23 H 1.08991 * 109.47481 * 240.00119 * 1 2 3 24 24 H 1.08999 * 109.33592 * 222.70249 * 5 3 2 25 25 H 1.08998 * 109.20259 * 103.11142 * 5 3 2 26 26 H 1.08998 * 109.47121 * 186.04362 * 7 6 5 27 27 H 1.09000 * 109.47141 * 306.04560 * 7 6 5 28 28 H 1.08998 * 109.47584 * 300.00097 * 8 7 6 29 29 H 1.09005 * 109.46901 * 60.00396 * 8 7 6 30 30 H 1.08998 * 109.47207 * 299.99936 * 9 8 7 31 31 H 1.09000 * 109.46973 * 60.00084 * 9 8 7 32 32 H 0.97003 * 120.00154 * 180.02562 * 14 13 11 33 33 H 1.09004 * 109.63423 * 50.85314 * 19 6 5 34 34 H 1.09001 * 109.63926 * 171.45817 * 19 6 5 35 35 H 1.09003 * 109.43114 * 283.57855 * 20 2 1 36 36 H 1.09001 * 109.42981 * 43.47632 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1284 1.1414 0.0000 4 35 1.0965 2.7261 0.0113 5 6 3.6248 1.2646 -0.0080 6 7 4.2421 -0.0073 0.3886 7 6 5.7040 0.0535 0.2573 8 6 6.2649 1.0599 1.2639 9 6 7.7876 1.1228 1.1277 10 16 8.4513 2.3128 2.3191 11 6 10.1700 2.1869 1.9523 12 1 10.5095 1.5117 1.1806 13 6 11.0879 2.9545 2.6556 14 7 10.6743 3.7769 3.5965 15 14 12.9101 2.8204 2.2672 16 1 13.2659 3.8064 1.2152 17 1 13.6996 3.0987 3.4938 18 1 13.2137 1.4495 1.7836 19 6 3.6863 -1.1131 -0.4091 20 6 2.2257 -1.3201 0.0006 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3632 -0.5138 -0.8901 23 1 -0.3634 -0.5138 0.8899 24 1 3.9264 2.0454 0.6902 25 1 3.9573 1.5298 -1.0116 26 1 6.1277 -0.9314 0.4536 27 1 5.9653 0.3666 -0.7536 28 1 5.8412 2.0448 1.0677 29 1 6.0036 0.7467 2.2748 30 1 8.2110 0.1378 1.3242 31 1 8.0493 1.4356 0.1168 32 1 11.3157 4.3137 4.0878 33 1 3.7378 -0.8623 -1.4687 34 1 4.2531 -2.0241 -0.2174 35 1 2.1871 -1.7535 1.0000 36 1 1.7440 -1.9955 -0.7064 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280862554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:36 Heat of formation + Delta-G solvation = 3.727559 kcal Electronic energy + Delta-G solvation = -16410.987635 eV Core-core repulsion = 13681.144222 eV Total energy + Delta-G solvation = -2729.843413 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 319.030 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.53385 -35.87336 -32.90975 -32.40679 -31.83620 -29.49329 -28.62986 -25.73882 -24.92049 -23.99278 -22.21689 -20.79330 -17.64783 -17.44510 -16.26173 -15.69349 -15.07874 -14.79534 -14.79016 -14.26146 -14.21698 -13.69869 -13.39951 -12.98498 -12.86213 -12.54395 -12.30180 -11.94601 -11.70066 -11.51189 -11.19620 -11.06465 -11.02652 -10.92168 -10.73793 -10.60389 -10.28736 -9.87597 -9.51536 -9.04264 -8.87507 -8.45621 -8.27634 -6.50585 -6.20984 -3.91066 1.53139 1.61181 3.22305 3.23103 3.30057 3.52427 3.84481 4.24222 4.34804 4.57074 4.85421 5.00428 5.04619 5.14894 5.20047 5.28666 5.34656 5.38244 5.38900 5.44898 5.54949 5.58033 5.65306 5.72786 5.78677 5.89129 5.97515 6.06350 6.32657 6.36969 6.58460 6.74786 6.88943 6.99147 7.62043 8.38209 9.25180 10.87185 Molecular weight = 319.03amu Principal moments of inertia in cm(-1) A = 0.025937 B = 0.002688 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.285635 B =10412.402992 C =11257.208186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.128 4.128 4 Br -0.066 7.066 5 C 0.098 3.902 6 N -0.529 5.529 7 C 0.060 3.940 8 C -0.095 4.095 9 C -0.113 4.113 10 S -0.131 6.131 11 C -0.516 4.516 12 H 0.072 0.928 13 C 0.070 3.930 14 N -0.869 5.869 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.047 3.953 20 C -0.074 4.074 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.267 0.733 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.511 -8.290 -9.779 25.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 C -0.207 4.207 4 Br 0.019 6.981 5 C -0.031 4.031 6 N -0.254 5.254 7 C -0.069 4.069 8 C -0.134 4.134 9 C -0.262 4.262 10 S 0.097 5.903 11 C -0.665 4.665 12 H 0.090 0.910 13 C -0.138 4.138 14 N -0.505 5.505 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.081 4.081 20 C -0.112 4.112 21 H 0.101 0.899 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.118 0.882 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.458 -6.988 -8.364 25.867 hybrid contribution 2.242 -0.980 -1.956 3.132 sum -21.216 -7.968 -10.320 24.902 Atomic orbital electron populations 1.21425 0.91451 1.04866 1.02631 1.21160 0.96358 0.94241 0.96010 1.23120 0.96091 0.90832 1.10630 1.96598 1.70220 1.33419 1.97837 1.20990 0.88113 0.93535 1.00447 1.62441 1.05618 1.02789 1.54538 1.22252 0.85325 1.00939 0.98362 1.21290 0.93849 0.98550 0.99685 1.23230 0.96865 1.03103 1.02997 1.84657 1.06383 1.52087 1.47174 1.22691 0.90633 1.28903 1.24228 0.91004 1.25015 0.99588 0.94631 0.94588 1.70027 1.34903 1.23996 1.21585 0.86172 0.82807 0.78610 0.77963 1.20302 1.20757 1.19702 1.22253 0.95177 0.95349 0.95369 1.20533 0.94012 0.93531 1.03135 0.89903 0.91042 0.90783 0.88249 0.93023 0.90353 0.94676 0.91669 0.90628 0.92107 0.92354 0.92320 0.94346 0.89792 0.89154 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.82 36.01 0.35 -0.80 16 2 C -0.07 -0.72 5.90 -100.96 -0.60 -1.32 16 3 C -0.13 -1.43 6.24 -36.00 -0.22 -1.65 16 4 Br -0.07 -0.71 30.85 -68.01 -2.10 -2.80 16 5 C 0.10 1.19 5.02 -5.28 -0.03 1.17 16 6 N -0.53 -6.45 4.72 -236.11 -1.11 -7.56 16 7 C 0.06 0.79 4.95 -3.82 -0.02 0.77 16 8 C -0.10 -1.56 5.14 -26.73 -0.14 -1.70 16 9 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 10 S -0.13 -3.47 21.44 -107.50 -2.30 -5.77 16 11 C -0.52 -14.91 9.50 30.94 0.29 -14.62 16 12 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 13 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 14 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 15 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 19 C 0.05 0.45 5.59 -3.59 -0.02 0.43 16 20 C -0.07 -0.61 6.05 -28.02 -0.17 -0.78 16 21 H 0.08 0.70 5.22 -51.93 -0.27 0.43 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.10 1.33 6.73 -51.93 -0.35 0.98 16 25 H 0.05 0.63 8.06 -51.93 -0.42 0.21 16 26 H 0.08 0.98 7.94 -51.93 -0.41 0.56 16 27 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 28 H 0.06 1.09 6.67 -51.93 -0.35 0.74 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 31 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -30.87 322.25 -10.93 -41.80 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.55 Total: -3.06 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -0.43 Total: -18.63 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: -0.38 Total: -33.01 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.30 Total: -5.77 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -2.10 Total: -2.80 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.87 -10.93 -41.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280862554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.527 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds