Wall clock time and date at job start Tue Mar 31 2020 13:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29957 * 118.56299 * 2 1 4 4 Br 1.89107 * 118.36791 * 0.38868 * 3 2 1 5 5 C 1.50148 * 123.26847 * 180.36620 * 3 2 1 6 6 N 1.46835 * 110.27193 * 342.94741 * 5 3 2 7 7 C 1.46906 * 111.00032 * 174.33600 * 6 5 3 8 8 C 1.52997 * 109.46848 * 66.04529 * 7 6 5 9 9 C 1.53006 * 109.46931 * 179.97438 * 8 7 6 10 10 S 1.81005 * 109.46998 * 180.02562 * 9 8 7 11 11 C 1.76192 * 99.99933 * 180.02562 * 10 9 8 12 12 H 1.08009 * 120.00256 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00268 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99842 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00312 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.46977 * 89.99687 * 15 13 11 17 17 H 1.48497 * 109.47535 * 209.99605 * 15 13 11 18 18 H 1.48502 * 109.47410 * 330.00145 * 15 13 11 19 19 C 1.47240 * 110.21181 * 50.94576 * 6 5 3 20 20 C 1.50306 * 118.56545 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.46913 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46580 * 119.99625 * 1 2 3 23 23 H 1.08991 * 109.47481 * 240.00119 * 1 2 3 24 24 H 1.08999 * 109.33592 * 222.70249 * 5 3 2 25 25 H 1.08998 * 109.20259 * 103.11142 * 5 3 2 26 26 H 1.08998 * 109.47121 * 186.04362 * 7 6 5 27 27 H 1.09000 * 109.47141 * 306.04560 * 7 6 5 28 28 H 1.08998 * 109.47584 * 300.00097 * 8 7 6 29 29 H 1.09005 * 109.46901 * 60.00396 * 8 7 6 30 30 H 1.08998 * 109.47207 * 299.99936 * 9 8 7 31 31 H 1.09000 * 109.46973 * 60.00084 * 9 8 7 32 32 H 0.97003 * 120.00154 * 180.02562 * 14 13 11 33 33 H 1.09004 * 109.63423 * 50.85314 * 19 6 5 34 34 H 1.09001 * 109.63926 * 171.45817 * 19 6 5 35 35 H 1.09003 * 109.43114 * 283.57855 * 20 2 1 36 36 H 1.09001 * 109.42981 * 43.47632 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1284 1.1414 0.0000 4 35 1.0965 2.7261 0.0113 5 6 3.6248 1.2646 -0.0080 6 7 4.2421 -0.0073 0.3886 7 6 5.7040 0.0535 0.2573 8 6 6.2649 1.0599 1.2639 9 6 7.7876 1.1228 1.1277 10 16 8.4513 2.3128 2.3191 11 6 10.1700 2.1869 1.9523 12 1 10.5095 1.5117 1.1806 13 6 11.0879 2.9545 2.6556 14 7 10.6743 3.7769 3.5965 15 14 12.9101 2.8204 2.2672 16 1 13.2659 3.8064 1.2152 17 1 13.6996 3.0987 3.4938 18 1 13.2137 1.4495 1.7836 19 6 3.6863 -1.1131 -0.4091 20 6 2.2257 -1.3201 0.0006 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3632 -0.5138 -0.8901 23 1 -0.3634 -0.5138 0.8899 24 1 3.9264 2.0454 0.6902 25 1 3.9573 1.5298 -1.0116 26 1 6.1277 -0.9314 0.4536 27 1 5.9653 0.3666 -0.7536 28 1 5.8412 2.0448 1.0677 29 1 6.0036 0.7467 2.2748 30 1 8.2110 0.1378 1.3242 31 1 8.0493 1.4356 0.1168 32 1 11.3157 4.3137 4.0878 33 1 3.7378 -0.8623 -1.4687 34 1 4.2531 -2.0241 -0.2174 35 1 2.1871 -1.7535 1.0000 36 1 1.7440 -1.9955 -0.7064 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280862554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:36 Heat of formation + Delta-G solvation = -14.145771 kcal Electronic energy + Delta-G solvation = -16411.762681 eV Core-core repulsion = 13681.144222 eV Total energy + Delta-G solvation = -2730.618459 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 319.030 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.38355 -36.83916 -34.61191 -34.01498 -32.70479 -30.28900 -29.55755 -27.82190 -26.13941 -24.85517 -23.12807 -22.05011 -19.55617 -18.43811 -17.23566 -16.89412 -16.65041 -16.07762 -15.94691 -15.78697 -15.17704 -14.78382 -14.56367 -14.23949 -13.67778 -13.60470 -13.50638 -13.28373 -12.94405 -12.89131 -12.63553 -12.50268 -12.49341 -12.12176 -11.88917 -11.69631 -11.55592 -11.30225 -11.13811 -10.65299 -10.30856 -9.66360 -9.37756 -8.66593 -8.36922 -6.13427 0.73888 0.84109 1.31465 1.39600 1.49017 1.74609 2.28646 2.85062 2.97229 3.33161 3.57247 3.86672 3.93535 4.09225 4.19451 4.29076 4.31732 4.38467 4.46256 4.54548 4.67118 4.70502 4.76915 4.78649 4.82977 4.88394 4.92070 5.10801 5.16512 5.28234 5.36325 5.39856 5.60232 5.95772 6.04172 6.18387 7.05085 8.72558 Molecular weight = 319.03amu Principal moments of inertia in cm(-1) A = 0.025937 B = 0.002688 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.285635 B =10412.402992 C =11257.208186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.156 4.156 4 Br -0.071 7.071 5 C 0.101 3.899 6 N -0.538 5.538 7 C 0.071 3.929 8 C -0.083 4.083 9 C -0.086 4.086 10 S -0.201 6.201 11 C -0.537 4.537 12 H 0.074 0.926 13 C 0.014 3.986 14 N -0.908 5.908 15 Si 0.995 3.005 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.262 1.262 19 C 0.044 3.956 20 C -0.073 4.073 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.271 0.729 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.794 -10.236 -11.029 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 C -0.235 4.235 4 Br 0.014 6.986 5 C -0.028 4.028 6 N -0.263 5.263 7 C -0.058 4.058 8 C -0.122 4.122 9 C -0.236 4.236 10 S 0.027 5.973 11 C -0.685 4.685 12 H 0.092 0.908 13 C -0.191 4.191 14 N -0.545 5.545 15 Si 0.817 3.183 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.186 1.186 19 C -0.083 4.083 20 C -0.111 4.111 21 H 0.093 0.907 22 H 0.108 0.892 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -23.760 -8.941 -9.621 27.149 hybrid contribution 2.214 -0.429 -1.582 2.755 sum -21.546 -9.371 -11.203 26.030 Atomic orbital electron populations 1.21463 0.90079 1.04830 1.04011 1.21544 0.97494 0.94291 0.93308 1.23066 0.95472 0.91397 1.13523 1.96577 1.70071 1.33968 1.97958 1.20854 0.89180 0.93152 0.99568 1.62395 1.04797 1.03531 1.55617 1.22059 0.86305 1.00234 0.97210 1.21159 0.91224 0.99468 1.00372 1.23145 0.98840 1.00885 1.00702 1.84707 1.06775 1.55309 1.50482 1.23041 0.91623 1.29287 1.24553 0.90827 1.26092 1.04968 0.93915 0.94133 1.70165 1.36812 1.24845 1.22649 0.85003 0.76070 0.79148 0.78101 1.19317 1.19939 1.18580 1.22384 0.96092 0.94697 0.95148 1.20634 0.93129 0.93178 1.04153 0.90723 0.89189 0.89652 0.90395 0.93420 0.89045 0.94159 0.92426 0.91620 0.91537 0.91997 0.91986 0.94057 0.88362 0.88745 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.82 71.24 0.70 -1.25 16 2 C -0.06 -1.09 5.90 -15.53 -0.09 -1.18 16 3 C -0.16 -3.35 6.24 26.55 0.17 -3.18 16 4 Br -0.07 -1.50 30.85 -20.37 -0.63 -2.13 16 5 C 0.10 2.44 5.02 85.40 0.43 2.87 16 6 N -0.54 -12.36 4.72 -900.91 -4.25 -16.61 16 7 C 0.07 1.77 4.95 86.30 0.43 2.20 16 8 C -0.08 -2.73 5.14 30.60 0.16 -2.57 16 9 C -0.09 -3.47 5.67 71.98 0.41 -3.06 16 10 S -0.20 -10.91 21.44 -56.49 -1.21 -12.12 16 11 C -0.54 -31.35 9.50 67.95 0.65 -30.71 16 12 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 13 C 0.01 0.79 5.49 84.86 0.47 1.25 16 14 N -0.91 -55.55 13.22 21.65 0.29 -55.27 16 15 Si 0.99 44.22 29.55 68.60 2.03 46.25 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 19 C 0.04 0.73 5.59 86.27 0.48 1.21 16 20 C -0.07 -0.98 6.05 29.76 0.18 -0.80 16 21 H 0.07 1.14 5.22 -2.39 -0.01 1.13 16 22 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 23 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.08 2.16 6.73 -2.39 -0.02 2.15 16 25 H 0.05 1.15 8.06 -2.39 -0.02 1.13 16 26 H 0.09 2.05 7.94 -2.39 -0.02 2.04 16 27 H 0.04 0.97 8.06 -2.39 -0.02 0.95 16 28 H 0.06 1.97 6.67 -2.39 -0.02 1.95 16 29 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.07 2.60 8.14 -2.40 -0.02 2.58 16 31 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.04 0.68 8.08 -2.39 -0.02 0.66 16 34 H 0.10 1.36 7.92 -2.39 -0.02 1.34 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -67.23 322.25 1.24 -65.99 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.05 Total: 9.12 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 3.97 Total: -35.22 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -3.97 Total: -71.88 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -10.91 SS G_CDS: -1.21 Total: -12.12 kcal Atomic # 35 Polarization: -1.50 SS G_CDS: -0.63 Total: -2.13 kcal Total: -67.23 1.24 -65.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280862554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.841 kcal (2) G-P(sol) polarization free energy of solvation -67.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds