Wall clock time and date at job start Tue Mar 31 2020 12:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00199 * 2 1 4 4 H 1.48503 * 109.46897 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47322 * 300.00102 * 3 2 1 6 6 H 1.48504 * 109.47112 * 60.00209 * 3 2 1 7 7 C 1.37874 * 119.99665 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00276 * 359.97438 * 7 2 1 10 10 C 1.53496 * 114.20758 * 180.02562 * 9 7 2 11 11 N 1.47073 * 87.98334 * 220.15126 * 10 9 7 12 12 S 1.65594 * 136.05445 * 207.08394 * 11 10 9 13 13 O 1.42101 * 106.40566 * 336.46059 * 12 11 10 14 14 O 1.42104 * 106.40382 * 203.53676 * 12 11 10 15 15 C 1.76199 * 107.21759 * 90.00094 * 12 11 10 16 16 C 1.38243 * 120.00613 * 114.72336 * 15 12 11 17 17 C 1.38220 * 120.04639 * 179.74206 * 16 15 12 18 18 C 1.38257 * 120.06380 * 0.51357 * 17 16 15 19 19 C 1.38275 * 120.01282 * 359.76441 * 18 17 16 20 20 Cl 1.73595 * 120.02800 * 180.02562 * 19 18 17 21 21 C 1.38397 * 120.00821 * 294.99637 * 15 12 11 22 22 F 1.35105 * 120.03159 * 0.02640 * 21 15 12 23 23 C 1.47067 * 87.88509 * 27.34283 * 11 10 9 24 24 H 0.97003 * 119.99687 * 359.97438 * 1 2 3 25 25 H 1.08997 * 113.27978 * 313.07152 * 9 7 2 26 26 H 1.08996 * 113.46601 * 105.36938 * 10 9 7 27 27 H 1.09000 * 113.51958 * 334.93863 * 10 9 7 28 28 H 1.07997 * 119.97741 * 359.97438 * 16 15 12 29 29 H 1.08002 * 119.96743 * 180.27966 * 17 16 15 30 30 H 1.08005 * 119.99677 * 179.74440 * 18 17 16 31 31 H 1.08994 * 113.46803 * 87.43812 * 23 11 10 32 32 H 1.08999 * 113.46731 * 217.87786 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.1486 -3.7443 -0.0005 11 7 1.2071 -4.3594 -0.9483 12 16 0.7458 -5.9008 -1.3399 13 8 1.8187 -6.7503 -0.9571 14 8 0.2352 -5.8425 -2.6648 15 6 -0.6144 -6.3181 -0.3005 16 6 -1.8632 -6.5382 -0.8511 17 6 -2.9296 -6.8708 -0.0372 18 6 -2.7516 -6.9737 1.3301 19 6 -1.5049 -6.7485 1.8841 20 17 -1.2809 -6.8781 3.6007 21 6 -0.4341 -6.4202 1.0679 22 9 0.7847 -6.1994 1.6076 23 6 0.8604 -3.0033 -1.3996 24 1 -0.4850 0.8401 0.0004 25 1 0.4437 -2.5306 0.7312 26 1 2.1875 -4.2513 0.9635 27 1 3.1374 -3.5676 -0.4239 28 1 -2.0048 -6.4538 -1.9185 29 1 -3.9037 -7.0469 -0.4692 30 1 -3.5866 -7.2296 1.9655 31 1 1.5092 -2.6304 -2.1921 32 1 -0.1983 -2.8791 -1.6275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594826675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:23 Heat of formation + Delta-G solvation = -55.906603 kcal Electronic energy + Delta-G solvation = -22583.575591 eV Core-core repulsion = 18806.280532 eV Total energy + Delta-G solvation = -3777.295058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.023 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.29970 -39.30567 -38.27816 -36.94051 -36.76820 -35.62145 -32.63969 -31.56280 -30.76394 -28.37889 -24.98991 -24.60926 -23.89046 -23.14657 -20.00826 -18.94748 -18.11836 -17.38277 -17.13160 -16.79220 -16.47676 -15.90092 -15.44550 -15.30712 -14.84789 -14.60152 -14.05444 -13.71198 -13.32845 -13.12615 -12.93027 -12.86704 -12.16138 -11.95928 -11.87675 -11.80665 -11.73583 -11.51670 -11.46548 -11.41470 -11.00343 -10.84152 -10.56627 -10.31558 -9.70576 -9.24558 -9.08968 -9.00347 -8.61241 -8.28777 -6.16963 -4.21362 0.26377 0.61246 0.66987 1.71774 2.87620 3.24133 3.29905 3.33699 3.37593 3.66876 3.90146 4.27244 4.34734 4.45926 4.59332 4.79259 5.03312 5.15293 5.38108 5.42542 5.61629 5.78550 5.79223 6.13424 6.24955 6.27131 6.37616 6.45997 6.68163 6.80273 7.45827 7.60815 7.81170 8.20821 8.82596 9.44706 10.92782 Molecular weight = 319.02amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.004779 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.925332 B = 5857.056741 C = 6653.728402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.035 3.965 10 C 0.125 3.875 11 N -1.044 6.044 12 S 2.711 3.289 13 O -0.954 6.954 14 O -0.957 6.957 15 C -0.700 4.700 16 C 0.009 3.991 17 C -0.140 4.140 18 C -0.035 4.035 19 C -0.096 4.096 20 Cl -0.042 7.042 21 C 0.213 3.787 22 F -0.105 7.105 23 C 0.132 3.868 24 H 0.263 0.737 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.159 0.841 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.076 0.924 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 -12.992 2.120 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.013 3.987 10 C 0.001 3.999 11 N -0.887 5.887 12 S 2.800 3.200 13 O -0.944 6.944 14 O -0.947 6.947 15 C -0.784 4.784 16 C -0.010 4.010 17 C -0.159 4.159 18 C -0.053 4.053 19 C -0.124 4.124 20 Cl -0.013 7.013 21 C 0.192 3.808 22 F -0.083 7.083 23 C 0.007 3.993 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.176 0.824 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.095 0.905 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.694 -13.695 1.628 15.330 hybrid contribution -0.052 0.941 0.796 1.234 sum -6.746 -12.753 2.424 14.630 Atomic orbital electron populations 1.69961 1.06081 1.26970 1.49322 1.25034 0.94860 0.99396 0.94304 0.86489 0.80237 0.83360 0.77641 1.19534 1.20934 1.20970 1.21016 0.93159 0.89611 1.51551 0.91670 1.20534 0.94696 0.91135 0.92303 1.22917 0.93449 0.93514 0.90022 1.59837 1.54470 1.20009 1.54389 1.01357 0.73200 0.72157 0.73276 1.93578 1.51464 1.65369 1.84007 1.93542 1.81364 1.86573 1.33230 1.31508 1.20346 1.19702 1.06796 1.21028 0.89427 0.88970 1.01559 1.21323 1.00059 1.01848 0.92672 1.21261 0.94764 0.93505 0.95804 1.21009 0.95140 1.09831 0.86462 1.98399 1.97350 1.96548 1.09022 1.16722 0.80297 0.94248 0.89576 1.91659 1.39937 1.90742 1.85927 1.23180 0.99568 0.74748 1.01774 0.92738 0.91449 0.92294 0.90485 0.82390 0.83358 0.83243 0.90548 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.91 13.26 55.43 0.74 -23.17 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -12.91 8.83 -34.44 -0.30 -13.22 16 8 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.03 0.79 3.79 -91.12 -0.35 0.45 16 10 C 0.13 2.50 8.29 -8.50 -0.07 2.43 16 11 N -1.04 -20.38 4.23 -125.00 -0.53 -20.91 16 12 S 2.71 49.20 5.92 -107.50 -0.64 48.56 16 13 O -0.95 -19.17 17.43 -57.17 -1.00 -20.16 16 14 O -0.96 -18.22 16.97 -57.17 -0.97 -19.19 16 15 C -0.70 -10.97 5.91 -39.52 -0.23 -11.20 16 16 C 0.01 0.12 9.55 -39.59 -0.38 -0.26 16 17 C -0.14 -1.37 10.04 -39.58 -0.40 -1.77 16 18 C -0.03 -0.35 9.83 -39.56 -0.39 -0.74 16 19 C -0.10 -1.28 6.33 -39.44 -0.25 -1.53 16 20 Cl -0.04 -0.53 28.62 -51.86 -1.48 -2.01 16 21 C 0.21 3.39 7.19 -39.39 -0.28 3.11 16 22 F -0.10 -1.82 15.10 2.25 0.03 -1.78 16 23 C 0.13 2.79 8.31 -8.36 -0.07 2.72 16 24 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 25 H 0.07 1.66 8.11 -51.93 -0.42 1.24 16 26 H 0.06 1.10 7.37 -51.93 -0.38 0.72 16 27 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 28 H 0.16 1.73 7.33 -52.49 -0.38 1.35 16 29 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 30 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 315.30 15.07 4.75 4.75 Total: -1.00 -29.95 315.30 -9.78 -39.73 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -2.84 Total: -2.38 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -2.82 Total: -18.37 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.21 Total: -44.09 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.97 Total: -39.36 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.03 Total: -1.78 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 49.20 SS G_CDS: -0.64 Total: 48.56 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.48 Total: -2.01 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.95 -9.78 -39.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594826675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.175 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds