Wall clock time and date at job start Tue Mar 31 2020 12:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47173 * 299.99471 * 3 2 1 6 6 H 1.48498 * 109.47243 * 59.99961 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47925 * 85.99684 * 138.00415 * 10 9 7 12 12 S 1.65602 * 134.49817 * 155.33700 * 11 10 9 13 13 O 1.42099 * 106.40243 * 23.56729 * 12 11 10 14 14 O 1.42104 * 106.39952 * 156.48915 * 12 11 10 15 15 C 1.76203 * 107.21722 * 270.02520 * 12 11 10 16 16 C 1.38223 * 119.99669 * 114.73031 * 15 12 11 17 17 C 1.38207 * 120.03878 * 179.72998 * 16 15 12 18 18 C 1.38385 * 120.03435 * 0.53859 * 17 16 15 19 19 Cl 1.73600 * 120.00032 * 179.75036 * 18 17 16 20 20 C 1.38291 * 119.99963 * 359.73536 * 18 17 16 21 21 C 1.38446 * 120.00040 * 295.00237 * 15 12 11 22 22 F 1.35098 * 120.01817 * 359.97438 * 21 15 12 23 23 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 24 24 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 25 25 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 26 26 H 1.09006 * 113.76402 * 252.36573 * 10 9 7 27 27 H 1.08997 * 113.76968 * 23.75198 * 10 9 7 28 28 H 1.08006 * 119.98513 * 359.97438 * 16 15 12 29 29 H 1.07998 * 119.98194 * 180.27602 * 17 16 15 30 30 H 1.08005 * 120.02362 * 180.02562 * 20 18 17 31 31 H 1.09003 * 113.77049 * 270.34039 * 23 11 10 32 32 H 1.08999 * 113.87175 * 138.95072 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 1.1904 -4.2911 -1.0121 12 16 0.7603 -5.8199 -1.4813 13 8 0.2035 -5.6984 -2.7830 14 8 1.8696 -6.6574 -1.1854 15 6 -0.5512 -6.3399 -0.4257 16 6 -1.8109 -6.5648 -0.9481 17 6 -2.8389 -6.9780 -0.1219 18 6 -2.6108 -7.1563 1.2314 19 17 -3.9043 -7.6691 2.2695 20 6 -1.3524 -6.9262 1.7567 21 6 -0.3212 -6.5176 0.9279 22 9 0.9087 -6.2930 1.4397 23 6 2.1608 -3.7402 -0.0462 24 1 -0.4849 0.8401 -0.0004 25 1 0.4833 -2.5466 0.7730 26 1 -0.3213 -2.8307 -1.5255 27 1 1.3285 -2.4988 -2.2141 28 1 -1.9912 -6.4214 -2.0033 29 1 -3.8218 -7.1578 -0.5318 30 1 -1.1739 -7.0656 2.8127 31 1 3.1449 -3.5476 -0.4734 32 1 2.2055 -4.2878 0.8951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594827389.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:25 Heat of formation + Delta-G solvation = -79.003245 kcal Electronic energy + Delta-G solvation = -22412.933711 eV Core-core repulsion = 18634.637107 eV Total energy + Delta-G solvation = -3778.296604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.023 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.47501 -40.33584 -39.71596 -38.39502 -37.76596 -37.09176 -34.54225 -32.53073 -31.88300 -30.05404 -26.83766 -26.36024 -24.81423 -24.30496 -21.55799 -20.18792 -19.48768 -18.83055 -18.38815 -18.21080 -18.00516 -17.07723 -16.77540 -16.57644 -16.42673 -15.77429 -15.48300 -15.00336 -14.73623 -14.60651 -14.44716 -14.14037 -13.51809 -13.39603 -13.29525 -13.24266 -13.14732 -13.10425 -12.83730 -12.79835 -12.32179 -12.25270 -12.23683 -12.05189 -11.07015 -10.91883 -10.55932 -10.48903 -10.20121 -9.89207 -8.11737 -6.21093 -0.95749 -0.68286 -0.23115 0.65794 1.47755 1.51840 1.61638 1.69534 2.01706 2.48883 2.52268 2.74559 2.98686 3.20645 3.37963 3.66423 3.83655 4.03565 4.15007 4.23786 4.43572 4.56066 4.60636 4.63969 4.73612 4.77490 4.83238 5.01102 5.12549 5.30216 5.65416 5.86553 5.90108 6.31298 6.87217 7.47856 8.98099 Molecular weight = 319.02amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.004280 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.040974 B = 6540.376634 C = 7417.561224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.066 0.934 9 C 0.025 3.975 10 C 0.142 3.858 11 N -1.040 6.040 12 S 2.714 3.286 13 O -0.973 6.973 14 O -0.979 6.979 15 C -0.721 4.721 16 C 0.012 3.988 17 C -0.131 4.131 18 C 0.040 3.960 19 Cl -0.026 7.026 20 C -0.166 4.166 21 C 0.193 3.807 22 F -0.123 7.123 23 C 0.132 3.868 24 H 0.263 0.737 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.176 0.824 29 H 0.186 0.814 30 H 0.175 0.825 31 H 0.085 0.915 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.516 -14.034 2.496 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.084 0.916 9 C 0.004 3.996 10 C 0.017 3.983 11 N -0.882 5.882 12 S 2.808 3.192 13 O -0.964 6.964 14 O -0.969 6.969 15 C -0.809 4.809 16 C -0.007 4.007 17 C -0.150 4.150 18 C 0.012 3.988 19 Cl 0.003 6.997 20 C -0.186 4.186 21 C 0.172 3.828 22 F -0.101 7.101 23 C 0.008 3.992 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.194 0.806 29 H 0.203 0.797 30 H 0.193 0.807 31 H 0.103 0.897 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.425 -14.698 1.869 16.572 hybrid contribution 0.013 0.960 0.737 1.211 sum -7.413 -13.737 2.606 15.826 Atomic orbital electron populations 1.70054 1.07287 1.27585 1.50816 1.25710 0.95533 1.02306 0.94344 0.85569 0.79320 0.79779 0.77339 1.18887 1.20913 1.21014 1.21420 0.93510 0.90896 1.50845 0.91551 1.20547 0.94298 0.91850 0.92907 1.23075 0.98859 0.75518 1.00834 1.60025 1.52096 1.19449 1.56630 1.00915 0.73331 0.71733 0.73179 1.93511 1.80300 1.86389 1.36207 1.93540 1.51103 1.66601 1.85700 1.31102 1.19060 1.22204 1.08517 1.21161 0.88413 0.88977 1.02132 1.21626 1.01894 1.00562 0.90908 1.21064 0.89418 0.95915 0.92378 1.98423 1.46989 1.88163 1.66125 1.21266 0.90879 1.04059 1.02384 1.17041 0.80662 0.94952 0.90193 1.91604 1.40025 1.91297 1.87198 1.23018 0.92898 0.93023 0.90286 0.92797 0.94100 0.92014 0.90690 0.80627 0.79705 0.80717 0.89714 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.76 13.29 21.45 0.28 -49.47 16 2 C 0.02 1.08 5.46 84.65 0.46 1.54 16 3 Si 0.95 40.80 29.54 68.60 2.03 42.82 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.53 -26.45 8.77 25.60 0.22 -26.23 16 8 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.03 1.16 3.60 -10.88 -0.04 1.12 16 10 C 0.14 6.06 8.55 86.42 0.74 6.80 16 11 N -1.04 -40.24 4.12 -528.89 -2.18 -42.42 16 12 S 2.71 97.12 5.88 -56.49 -0.33 96.79 16 13 O -0.97 -36.79 16.94 -128.00 -2.17 -38.96 16 14 O -0.98 -38.98 17.40 -128.00 -2.23 -41.20 16 15 C -0.72 -21.57 5.91 22.32 0.13 -21.44 16 16 C 0.01 0.29 9.55 22.26 0.21 0.51 16 17 C -0.13 -2.42 9.83 22.30 0.22 -2.20 16 18 C 0.04 0.78 6.32 22.32 0.14 0.92 16 19 Cl -0.03 -0.43 28.96 -2.72 -0.08 -0.50 16 20 C -0.17 -3.78 9.81 22.34 0.22 -3.56 16 21 C 0.19 5.60 7.21 22.37 0.16 5.77 16 22 F -0.12 -3.94 15.37 44.97 0.69 -3.25 16 23 C 0.13 5.19 8.53 86.49 0.74 5.92 16 24 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 25 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 27 H 0.07 3.20 8.09 -2.39 -0.02 3.18 16 28 H 0.18 3.57 7.33 -2.91 -0.02 3.55 16 29 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.18 3.14 8.06 -2.91 -0.02 3.11 16 31 H 0.08 3.17 8.09 -2.39 -0.02 3.15 16 32 H 0.08 2.75 7.22 -2.39 -0.02 2.74 16 Total: -1.00 -61.96 315.62 0.39 -61.57 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 1.16 Total: 5.47 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 3.21 Total: -30.84 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -1.90 Total: -91.89 kcal Atomic # 8 Polarization: -75.76 SS G_CDS: -4.40 Total: -80.16 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.69 Total: -3.25 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 97.12 SS G_CDS: -0.33 Total: 96.79 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.50 kcal Total: -61.96 0.39 -61.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594827389.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.436 kcal (2) G-P(sol) polarization free energy of solvation -61.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds