Wall clock time and date at job start Tue Mar 31 2020 13:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00195 * 2 1 4 4 H 1.48498 * 109.46821 * 239.99689 * 3 2 1 5 5 H 1.48493 * 109.46932 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46843 * 119.99741 * 3 2 1 7 7 C 1.37879 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99808 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.54169 * 60.09500 * 9 7 2 11 11 C 1.53120 * 109.50204 * 299.99151 * 9 7 2 12 12 C 1.53114 * 109.16161 * 182.40736 * 11 9 7 13 13 C 1.53036 * 109.27799 * 57.65854 * 12 11 9 14 14 N 1.46850 * 109.52384 * 300.81924 * 13 12 11 15 15 C 1.46896 * 111.00472 * 185.84130 * 14 13 12 16 16 C 1.50701 * 109.47043 * 66.04154 * 15 14 13 17 17 C 1.33369 * 122.54293 * 259.71163 * 16 15 14 18 18 S 1.75876 * 109.63257 * 179.90753 * 17 16 15 19 19 C 1.75880 * 90.99017 * 0.30226 * 18 17 16 20 20 Cl 1.73607 * 125.20442 * 179.82987 * 19 18 17 21 21 C 1.33543 * 109.59047 * 359.83031 * 19 18 17 22 22 Cl 1.73603 * 122.56682 * 180.02562 * 21 19 18 23 23 C 1.46846 * 111.19870 * 61.74019 * 14 13 12 24 24 H 0.97006 * 119.99407 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.52336 * 62.50472 * 11 9 7 26 26 H 1.09001 * 109.57675 * 302.34822 * 11 9 7 27 27 H 1.09004 * 109.50600 * 297.71890 * 12 11 9 28 28 H 1.08997 * 109.50718 * 177.59550 * 12 11 9 29 29 H 1.08995 * 109.46942 * 60.83456 * 13 12 11 30 30 H 1.08998 * 109.46530 * 180.80782 * 13 12 11 31 31 H 1.08999 * 109.47799 * 186.04465 * 15 14 13 32 32 H 1.09003 * 109.47009 * 306.04671 * 15 14 13 33 33 H 1.08001 * 125.18371 * 0.02562 * 17 16 15 34 34 H 1.08993 * 109.46639 * 178.24333 * 23 14 13 35 35 H 1.09010 * 109.45973 * 58.27499 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6254 -2.5590 -0.8901 11 6 0.3700 -2.5807 1.2503 12 6 -0.3458 -3.9341 1.2732 13 6 0.6943 -5.0563 1.2418 14 7 1.5109 -4.9348 0.0274 15 6 2.4284 -6.0742 -0.1063 16 6 1.6341 -7.3347 -0.3330 17 6 1.3790 -8.2071 0.6430 18 16 0.4303 -9.5445 0.0070 19 6 0.4405 -8.8279 -1.5992 20 17 -0.3155 -9.5110 -3.0048 21 6 1.1189 -7.6779 -1.5721 22 17 1.3376 -6.6885 -2.9817 23 6 2.2447 -3.6630 0.0060 24 1 -0.4849 0.8401 -0.0004 25 1 -0.3679 -1.7788 1.2288 26 1 0.9900 -2.4814 2.1413 27 1 -0.9964 -4.0165 0.4025 28 1 -0.9415 -4.0154 2.1823 29 1 1.3358 -4.9816 2.1198 30 1 0.1875 -6.0213 1.2435 31 1 3.0943 -5.9072 -0.9529 32 1 3.0177 -6.1750 0.8051 33 1 1.7037 -8.1066 1.6681 34 1 2.8640 -3.6159 -0.8897 35 1 2.8790 -3.5947 0.8899 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:10 Heat of formation + Delta-G solvation = 16.904237 kcal Electronic energy + Delta-G solvation = -20146.391411 eV Core-core repulsion = 16936.423138 eV Total energy + Delta-G solvation = -3209.968273 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 319.026 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.26946 -37.68004 -36.81037 -36.05693 -33.61734 -31.78095 -30.05544 -29.36384 -26.55690 -24.90440 -23.32246 -21.84637 -21.32165 -19.37522 -18.57785 -17.97466 -16.41456 -16.14047 -15.25535 -14.72785 -14.37193 -14.03444 -13.89657 -13.73562 -13.41173 -13.21546 -12.72960 -12.43167 -12.14920 -11.89145 -11.81606 -11.40686 -11.31737 -11.24566 -10.98332 -10.91706 -10.76140 -10.65657 -10.63754 -10.09552 -9.81802 -9.45240 -9.07253 -8.78110 -8.68742 -8.52583 -8.27835 -7.67042 -5.95006 -4.01274 0.50127 0.78100 1.38031 1.85233 2.21210 2.60958 3.33511 3.38433 3.40625 4.41739 4.60852 4.73511 4.81190 5.34656 5.35478 5.37475 5.56871 5.73789 5.80655 5.92329 6.05079 6.11145 6.27075 6.41061 6.52540 6.73252 6.76775 6.98197 7.24006 7.40686 7.65677 7.75949 7.81072 8.11505 8.20347 8.50154 9.02614 9.62863 11.10814 Molecular weight = 319.03amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.003485 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.170246 B = 8033.064188 C = 8510.302055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.057 3.943 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.062 3.938 14 N -0.527 5.527 15 C 0.109 3.891 16 C -0.071 4.071 17 C -0.198 4.198 18 S 0.168 5.832 19 C -0.159 4.159 20 Cl -0.001 7.001 21 C -0.009 4.009 22 Cl -0.017 7.017 23 C 0.070 3.930 24 H 0.260 0.740 25 H 0.090 0.910 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.022 0.978 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.177 0.823 34 H 0.060 0.940 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 -20.249 -0.088 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.038 3.962 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.066 4.066 14 N -0.252 5.252 15 C -0.021 4.021 16 C -0.084 4.084 17 C -0.335 4.335 18 S 0.430 5.570 19 C -0.304 4.304 20 Cl 0.028 6.972 21 C -0.050 4.050 22 Cl 0.012 6.988 23 C -0.056 4.056 24 H 0.070 0.930 25 H 0.108 0.892 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.194 0.806 34 H 0.079 0.921 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.005 -21.422 -0.132 21.422 hybrid contribution 1.485 2.171 -0.090 2.632 sum 1.479 -19.250 -0.221 19.308 Atomic orbital electron populations 1.69886 1.05826 1.26382 1.50555 1.24922 0.94803 0.98881 0.95145 0.86704 0.79626 0.83383 0.78526 1.20320 1.21346 1.20414 1.21105 0.92763 0.90691 1.50849 0.92923 1.18644 0.92567 0.90118 0.94883 0.94702 1.21649 1.00032 0.94702 0.98426 1.21657 0.97168 0.96440 1.00129 1.22062 0.95695 0.98887 0.89929 1.61970 1.23520 1.01486 1.38207 1.20775 0.92949 0.87123 1.01276 1.18534 1.01222 0.98255 0.90356 1.25530 1.06058 0.98225 1.03643 1.84298 1.52739 1.23362 0.96583 1.25009 1.09391 1.00544 0.95444 1.98372 1.79520 1.83370 1.35974 1.19660 1.01541 0.92388 0.91445 1.98407 1.95569 1.68302 1.36493 1.22320 0.96450 0.88061 0.98804 0.93033 0.89151 0.95236 0.92125 0.93666 0.95973 0.92462 0.89500 0.93988 0.80572 0.92134 0.96241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 11.35 55.43 0.63 -24.65 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -13.99 8.56 -34.44 -0.29 -14.29 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.06 1.40 2.27 -91.69 -0.21 1.19 16 10 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.57 5.02 -26.61 -0.13 -2.71 16 12 C -0.12 -2.25 6.09 -26.65 -0.16 -2.42 16 13 C 0.06 1.06 5.28 -3.83 -0.02 1.04 16 14 N -0.53 -9.33 4.65 -236.11 -1.10 -10.43 16 15 C 0.11 1.57 4.80 -4.98 -0.02 1.54 16 16 C -0.07 -0.92 4.49 -106.22 -0.48 -1.40 16 17 C -0.20 -2.08 9.94 29.03 0.29 -1.79 16 18 S 0.17 1.64 23.34 -107.50 -2.51 -0.86 16 19 C -0.16 -1.94 7.09 29.09 0.21 -1.73 16 20 Cl 0.00 -0.01 28.78 -51.86 -1.49 -1.50 16 21 C -0.01 -0.12 6.27 -41.12 -0.26 -0.38 16 22 Cl -0.02 -0.24 27.76 -51.86 -1.44 -1.68 16 23 C 0.07 1.45 4.68 -3.83 -0.02 1.43 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.88 6.38 -51.93 -0.33 0.54 16 31 H 0.09 1.25 7.59 -51.93 -0.39 0.85 16 32 H 0.04 0.55 8.05 -51.93 -0.42 0.13 16 33 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.06 1.24 8.01 -51.93 -0.42 0.82 16 35 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -27.89 325.67 -11.60 -39.48 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -4.38 Total: -3.59 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -1.19 Total: -17.85 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: -0.47 Total: -35.08 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.51 Total: -0.86 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -2.93 Total: -3.19 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.89 -11.60 -39.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.388 kcal (2) G-P(sol) polarization free energy of solvation -27.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds