Wall clock time and date at job start Tue Mar 31 2020 13:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00195 * 2 1 4 4 H 1.48498 * 109.46821 * 239.99689 * 3 2 1 5 5 H 1.48493 * 109.46932 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46843 * 119.99741 * 3 2 1 7 7 C 1.37879 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99808 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.54169 * 60.09500 * 9 7 2 11 11 C 1.53120 * 109.50204 * 299.99151 * 9 7 2 12 12 C 1.53114 * 109.16161 * 182.40736 * 11 9 7 13 13 C 1.53036 * 109.27799 * 57.65854 * 12 11 9 14 14 N 1.46850 * 109.52384 * 300.81924 * 13 12 11 15 15 C 1.46896 * 111.00472 * 185.84130 * 14 13 12 16 16 C 1.50701 * 109.47043 * 66.04154 * 15 14 13 17 17 C 1.33369 * 122.54293 * 259.71163 * 16 15 14 18 18 S 1.75876 * 109.63257 * 179.90753 * 17 16 15 19 19 C 1.75880 * 90.99017 * 0.30226 * 18 17 16 20 20 Cl 1.73607 * 125.20442 * 179.82987 * 19 18 17 21 21 C 1.33543 * 109.59047 * 359.83031 * 19 18 17 22 22 Cl 1.73603 * 122.56682 * 180.02562 * 21 19 18 23 23 C 1.46846 * 111.19870 * 61.74019 * 14 13 12 24 24 H 0.97006 * 119.99407 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.52336 * 62.50472 * 11 9 7 26 26 H 1.09001 * 109.57675 * 302.34822 * 11 9 7 27 27 H 1.09004 * 109.50600 * 297.71890 * 12 11 9 28 28 H 1.08997 * 109.50718 * 177.59550 * 12 11 9 29 29 H 1.08995 * 109.46942 * 60.83456 * 13 12 11 30 30 H 1.08998 * 109.46530 * 180.80782 * 13 12 11 31 31 H 1.08999 * 109.47799 * 186.04465 * 15 14 13 32 32 H 1.09003 * 109.47009 * 306.04671 * 15 14 13 33 33 H 1.08001 * 125.18371 * 0.02562 * 17 16 15 34 34 H 1.08993 * 109.46639 * 178.24333 * 23 14 13 35 35 H 1.09010 * 109.45973 * 58.27499 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6254 -2.5590 -0.8901 11 6 0.3700 -2.5807 1.2503 12 6 -0.3458 -3.9341 1.2732 13 6 0.6943 -5.0563 1.2418 14 7 1.5109 -4.9348 0.0274 15 6 2.4284 -6.0742 -0.1063 16 6 1.6341 -7.3347 -0.3330 17 6 1.3790 -8.2071 0.6430 18 16 0.4303 -9.5445 0.0070 19 6 0.4405 -8.8279 -1.5992 20 17 -0.3155 -9.5110 -3.0048 21 6 1.1189 -7.6779 -1.5721 22 17 1.3376 -6.6885 -2.9817 23 6 2.2447 -3.6630 0.0060 24 1 -0.4849 0.8401 -0.0004 25 1 -0.3679 -1.7788 1.2288 26 1 0.9900 -2.4814 2.1413 27 1 -0.9964 -4.0165 0.4025 28 1 -0.9415 -4.0154 2.1823 29 1 1.3358 -4.9816 2.1198 30 1 0.1875 -6.0213 1.2435 31 1 3.0943 -5.9072 -0.9529 32 1 3.0177 -6.1750 0.8051 33 1 1.7037 -8.1066 1.6681 34 1 2.8640 -3.6159 -0.8897 35 1 2.8790 -3.5947 0.8899 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:10 Heat of formation + Delta-G solvation = 2.242967 kcal Electronic energy + Delta-G solvation = -20147.027172 eV Core-core repulsion = 16936.423138 eV Total energy + Delta-G solvation = -3210.604034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 319.026 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42242 -38.98483 -37.74160 -37.12083 -35.38651 -33.45710 -31.69231 -30.55554 -27.71703 -26.86584 -24.46690 -23.34176 -22.91829 -20.35538 -20.23663 -18.93766 -18.33514 -17.14398 -16.78925 -16.40871 -15.79098 -15.16267 -15.08313 -14.88087 -14.70381 -14.55625 -14.29780 -14.04588 -13.61238 -13.32278 -12.91691 -12.81773 -12.68568 -12.58932 -12.54523 -12.27199 -12.16030 -11.92957 -11.77584 -11.74619 -11.66585 -11.34431 -10.84212 -10.62904 -10.34431 -9.68625 -9.39587 -9.03814 -8.04936 -6.19023 -0.38385 -0.06918 0.50143 0.96315 1.24835 1.42909 1.44087 1.51518 1.67437 2.44956 3.22044 3.24953 3.75265 3.94757 4.24475 4.27994 4.34968 4.43750 4.51023 4.65110 4.67757 4.80414 4.93240 4.95177 5.02881 5.09856 5.17419 5.23833 5.44063 5.56573 5.66641 6.00848 6.17583 6.25669 6.39035 6.50145 6.94385 7.48809 8.99263 Molecular weight = 319.03amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.003485 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.170246 B = 8033.064188 C = 8510.302055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.055 3.945 10 H -0.008 1.008 11 C -0.102 4.102 12 C -0.110 4.110 13 C 0.069 3.931 14 N -0.540 5.540 15 C 0.114 3.886 16 C -0.096 4.096 17 C -0.183 4.183 18 S 0.233 5.767 19 C -0.177 4.177 20 Cl -0.001 7.001 21 C -0.026 4.026 22 Cl -0.041 7.041 23 C 0.086 3.914 24 H 0.259 0.741 25 H 0.054 0.946 26 H 0.025 0.975 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.206 0.794 34 H 0.054 0.946 35 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 -22.193 1.540 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.010 0.990 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.058 4.058 14 N -0.264 5.264 15 C -0.016 4.016 16 C -0.108 4.108 17 C -0.320 4.320 18 S 0.495 5.505 19 C -0.322 4.322 20 Cl 0.028 6.972 21 C -0.068 4.068 22 Cl -0.012 7.012 23 C -0.041 4.041 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.222 0.778 34 H 0.073 0.927 35 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.634 -23.392 1.497 23.448 hybrid contribution 1.240 2.664 -0.579 2.995 sum 1.874 -20.728 0.918 20.832 Atomic orbital electron populations 1.70044 1.07193 1.26987 1.51297 1.25702 0.95597 1.02241 0.94871 0.85711 0.78432 0.79294 0.78803 1.19815 1.21118 1.19516 1.21516 0.93019 0.92196 1.50673 0.92940 1.18552 0.92962 0.91296 0.93592 0.98994 1.21438 0.99051 0.96128 0.97410 1.21563 0.97619 0.95116 1.00469 1.22011 0.95095 0.98748 0.89987 1.61833 1.24330 1.01322 1.38951 1.20718 0.92603 0.86339 1.01911 1.18362 1.03029 0.98598 0.90826 1.25923 1.04285 0.97487 1.04343 1.84166 1.50847 1.21582 0.93860 1.25301 1.09232 1.00677 0.96951 1.98371 1.79408 1.83187 1.36269 1.19819 1.02925 0.92884 0.91147 1.98394 1.95789 1.69100 1.37905 1.21930 0.95197 0.88409 0.98572 0.93193 0.92729 0.95625 0.93875 0.91368 0.94804 0.89858 0.90215 0.92017 0.77754 0.92730 0.96055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.81 11.35 21.45 0.24 -53.57 16 2 C 0.01 0.82 5.30 84.65 0.45 1.26 16 3 Si 0.95 43.97 29.54 68.60 2.03 45.99 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.54 -29.77 8.56 25.60 0.22 -29.55 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.05 2.79 2.27 -11.49 -0.03 2.77 16 10 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 11 C -0.10 -4.87 5.02 30.67 0.15 -4.72 16 12 C -0.11 -4.19 6.09 30.64 0.19 -4.00 16 13 C 0.07 2.18 5.28 86.32 0.46 2.64 16 14 N -0.54 -18.53 4.65 -900.93 -4.19 -22.71 16 15 C 0.11 3.04 4.80 85.56 0.41 3.46 16 16 C -0.10 -2.24 4.49 -20.90 -0.09 -2.33 16 17 C -0.18 -3.10 9.94 66.72 0.66 -2.44 16 18 S 0.23 3.69 23.34 -56.49 -1.32 2.37 16 19 C -0.18 -3.96 7.09 66.76 0.47 -3.48 16 20 Cl 0.00 -0.02 28.78 -2.72 -0.08 -0.10 16 21 C -0.03 -0.67 6.27 21.27 0.13 -0.53 16 22 Cl -0.04 -1.19 27.76 -2.72 -0.08 -1.27 16 23 C 0.09 3.57 4.68 86.33 0.40 3.97 16 24 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 25 H 0.05 2.98 6.15 -2.39 -0.01 2.97 16 26 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 2.23 6.38 -2.39 -0.02 2.21 16 31 H 0.08 2.23 7.59 -2.39 -0.02 2.21 16 32 H 0.06 1.41 8.05 -2.39 -0.02 1.39 16 33 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.05 2.27 8.01 -2.39 -0.02 2.25 16 35 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -62.21 325.67 1.14 -61.07 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: 1.10 Total: 1.17 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 3.43 Total: -32.95 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -3.94 Total: -76.28 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.32 Total: 2.37 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.15 Total: -1.37 kcal Total: -62.21 1.14 -61.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.309 kcal (2) G-P(sol) polarization free energy of solvation -62.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds