Wall clock time and date at job start Tue Mar 31 2020 12:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47522 * 300.00351 * 3 2 1 6 6 H 1.48500 * 109.47073 * 60.00717 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.50694 * 109.47550 * 180.02562 * 14 13 11 16 16 C 1.38265 * 119.98379 * 269.72745 * 15 14 13 17 17 C 1.38207 * 120.04092 * 179.76211 * 16 15 14 18 18 C 1.38355 * 119.99843 * 0.51268 * 17 16 15 19 19 Cl 1.73589 * 120.01891 * 179.72046 * 18 17 16 20 20 C 1.38445 * 119.95739 * 359.74070 * 18 17 16 21 21 Cl 1.73601 * 120.01610 * 180.02562 * 20 18 17 22 22 C 1.38211 * 119.97939 * 89.99952 * 15 14 13 23 23 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 25 25 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 26 26 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 27 27 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 28 28 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 29 29 H 1.08004 * 119.97945 * 0.02562 * 16 15 14 30 30 H 1.07995 * 120.00252 * 180.25594 * 17 16 15 31 31 H 1.07995 * 120.00087 * 359.95846 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 2.3306 -7.7150 -0.0141 15 6 3.4849 -8.6836 -0.0203 16 6 4.0088 -9.1266 -1.2207 17 6 5.0707 -10.0111 -1.2278 18 6 5.6032 -10.4622 -0.0332 19 17 6.9323 -11.5789 -0.0415 20 6 5.0752 -10.0228 1.1688 21 17 5.7427 -10.5873 2.6686 22 6 4.0157 -9.1332 1.1740 23 1 -0.4851 0.8400 0.0004 24 1 3.1252 -3.7316 0.8875 25 1 3.1238 -3.7309 -0.8925 26 1 3.8010 -6.1834 -0.0093 27 1 1.7235 -7.8794 0.8762 28 1 1.7203 -7.8707 -0.9037 29 1 3.5907 -8.7778 -2.1535 30 1 5.4821 -10.3535 -2.1658 31 1 3.6036 -8.7897 2.1113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598211002.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:55 Heat of formation + Delta-G solvation = -53.997446 kcal Electronic energy + Delta-G solvation = -18190.181057 eV Core-core repulsion = 14841.305161 eV Total energy + Delta-G solvation = -3348.875896 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.994 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03101 -40.18991 -37.75292 -37.58775 -35.85333 -34.57042 -32.70768 -31.99704 -30.61913 -27.72016 -26.80569 -24.06935 -22.70444 -21.80708 -19.88486 -18.53543 -17.80773 -17.30946 -17.28761 -16.86847 -16.44404 -16.38022 -15.82129 -15.10965 -14.99967 -14.85020 -14.46781 -14.35336 -14.27882 -13.34987 -13.14497 -12.95860 -12.92856 -12.90757 -12.74950 -12.58434 -12.42683 -12.04592 -11.91735 -11.69820 -11.14717 -11.03103 -10.25671 -10.16863 -10.04801 -9.77492 -8.64656 -8.33741 -6.11123 -0.26056 0.00053 0.76349 1.13772 1.29163 1.42341 1.48817 1.59575 1.62195 2.12131 2.28391 2.58645 3.00652 3.34273 3.43372 3.56108 3.96465 3.99636 4.04910 4.13559 4.32476 4.47852 4.54440 4.66961 4.74943 4.81809 4.96558 5.29800 5.35138 5.43767 5.49905 6.21369 6.47503 7.08111 7.22775 8.75579 Molecular weight = 318.99amu Principal moments of inertia in cm(-1) A = 0.025761 B = 0.002194 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.641004 B =12761.681788 C =12956.508921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.537 3.463 12 O -0.562 6.562 13 N -0.710 5.710 14 C 0.163 3.837 15 C -0.085 4.085 16 C -0.075 4.075 17 C -0.096 4.096 18 C -0.034 4.034 19 Cl -0.052 7.052 20 C -0.045 4.045 21 Cl -0.054 7.054 22 C -0.082 4.082 23 H 0.271 0.729 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.415 0.585 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.598 -23.900 -1.018 28.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.282 4.282 11 C 0.323 3.677 12 O -0.440 6.440 13 N -0.364 5.364 14 C 0.040 3.960 15 C -0.086 4.086 16 C -0.094 4.094 17 C -0.114 4.114 18 C -0.062 4.062 19 Cl -0.022 7.022 20 C -0.072 4.072 21 Cl -0.025 7.025 22 C -0.101 4.101 23 H 0.080 0.920 24 H 0.127 0.873 25 H 0.129 0.871 26 H 0.252 0.748 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.180 0.820 30 H 0.184 0.816 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.646 -24.319 -0.875 27.900 hybrid contribution 2.050 1.076 0.346 2.341 sum 15.696 -23.244 -0.529 28.052 Atomic orbital electron populations 1.70186 1.07931 1.28516 1.48138 1.26116 0.95963 1.03298 0.93829 0.84914 0.78629 0.76435 0.78026 1.18044 1.19974 1.20039 1.23231 0.95332 0.92032 1.58619 0.89936 1.85563 1.10527 0.99208 1.97042 1.23379 1.03559 0.94357 1.06871 1.20005 0.86147 0.86491 0.75039 1.90708 1.17281 1.85992 1.50008 1.45782 1.10342 1.04502 1.75808 1.20200 0.93341 0.78560 1.03892 1.19784 0.97396 0.98368 0.93082 1.21462 0.94324 0.94811 0.98802 1.21331 0.96100 0.96974 0.97003 1.21054 0.93873 0.97299 0.93995 1.98402 1.44897 1.60064 1.98879 1.20851 0.98555 1.00999 0.86844 1.98402 1.84706 1.88135 1.31268 1.21101 0.93939 0.95157 0.99886 0.92022 0.87297 0.87075 0.74787 0.90646 0.89782 0.82036 0.81569 0.83252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.38 13.22 21.65 0.29 -55.09 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.09 29.55 68.60 2.03 45.11 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -30.54 9.50 67.95 0.65 -29.90 16 8 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 9 S -0.15 -8.16 20.57 -56.49 -1.16 -9.32 16 10 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 11 C 0.54 18.25 7.85 87.66 0.69 18.94 16 12 O -0.56 -24.40 15.86 -3.04 -0.05 -24.45 16 13 N -0.71 -15.55 5.55 -466.79 -2.59 -18.14 16 14 C 0.16 2.97 5.80 85.63 0.50 3.47 16 15 C -0.09 -1.16 5.25 -19.87 -0.10 -1.26 16 16 C -0.08 -0.80 9.70 22.27 0.22 -0.58 16 17 C -0.10 -1.01 9.83 22.29 0.22 -0.79 16 18 C -0.03 -0.49 6.32 22.35 0.14 -0.35 16 19 Cl -0.05 -0.75 27.96 -2.72 -0.08 -0.82 16 20 C -0.04 -0.70 6.32 22.34 0.14 -0.56 16 21 Cl -0.05 -0.89 27.96 -2.72 -0.08 -0.97 16 22 C -0.08 -1.18 9.48 22.29 0.21 -0.97 16 23 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 25 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 26 H 0.42 6.73 8.46 -92.71 -0.78 5.95 16 27 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 28 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 29 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 30 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 31 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -73.34 324.91 2.32 -71.03 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.39 Total: 7.93 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 3.56 Total: -15.29 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -2.30 Total: -73.23 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.32 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.15 Total: -1.79 kcal Total: -73.34 2.32 -71.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598211002.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.028 kcal (2) G-P(sol) polarization free energy of solvation -73.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds