Wall clock time and date at job start Tue Mar 31 2020 12:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48499 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46940 * 300.00410 * 3 2 1 6 6 H 1.48500 * 109.46824 * 59.99996 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47107 * 179.97438 * 12 11 10 14 14 C 1.38255 * 119.99312 * 104.99822 * 13 12 11 15 15 C 1.38203 * 120.07833 * 179.97438 * 14 13 12 16 16 C 1.38331 * 120.06235 * 359.97438 * 15 14 13 17 17 Br 1.89099 * 120.00956 * 180.02562 * 16 15 14 18 18 C 1.38455 * 119.97967 * 0.02562 * 16 15 14 19 19 F 1.35109 * 120.03543 * 179.97438 * 18 16 15 20 20 C 1.38390 * 119.98825 * 284.72297 * 13 12 11 21 21 F 1.35093 * 120.03351 * 359.97438 * 20 13 12 22 22 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 24 24 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 25 25 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 26 26 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 27 27 H 1.00908 * 110.99583 * 303.94989 * 11 10 9 28 28 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 29 29 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 30 30 H 1.07998 * 119.96002 * 359.97438 * 14 13 12 31 31 H 1.08005 * 119.96611 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6474 -7.3604 -0.0006 14 6 1.5506 -8.1118 -1.1571 15 6 0.8288 -9.2904 -1.1589 16 6 0.2021 -9.7210 -0.0034 17 35 -0.7845 -11.3342 -0.0074 18 6 0.2974 -8.9705 1.1562 19 9 -0.3147 -9.3897 2.2854 20 6 1.0256 -7.7905 1.1586 21 9 1.1251 -7.0596 2.2903 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8720 -3.6043 0.8894 26 1 2.8720 -3.6043 -0.8906 27 1 0.8742 -4.9845 0.7801 28 1 3.0640 -6.0348 -0.8901 29 1 3.0628 -6.0349 0.8899 30 1 2.0395 -7.7774 -2.0601 31 1 0.7547 -9.8762 -2.0633 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598971750.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:52 Heat of formation + Delta-G solvation = -88.453698 kcal Electronic energy + Delta-G solvation = -18019.842809 eV Core-core repulsion = 14596.328636 eV Total energy + Delta-G solvation = -3423.514173 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 319.008 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.70643 -49.79246 -40.33690 -37.55439 -35.22883 -33.75111 -31.89040 -31.57421 -30.15532 -27.01403 -25.16027 -24.14398 -22.79417 -22.42819 -19.10341 -18.55140 -18.35244 -18.19205 -17.61001 -16.79992 -16.41338 -16.24827 -15.93315 -15.66531 -15.51008 -15.20920 -14.51095 -14.25718 -13.96005 -13.68881 -13.61562 -13.20227 -12.94330 -12.85193 -12.47399 -12.30058 -12.01043 -11.87468 -11.49527 -11.41981 -11.26173 -10.57424 -9.95895 -9.94904 -9.37827 -8.20245 -6.31864 -0.44230 -0.27542 0.25771 1.41508 1.41643 1.55037 2.06016 2.41089 2.52033 3.12488 3.13621 3.29462 3.44553 3.53579 3.80252 4.15645 4.24464 4.45360 4.54555 4.62546 4.65154 4.78326 4.87039 5.05960 5.11539 5.43309 5.46583 5.65083 5.75982 6.06330 6.19652 6.35640 6.85900 7.37761 8.92200 Molecular weight = 319.01amu Principal moments of inertia in cm(-1) A = 0.036559 B = 0.002491 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.711019 B =11237.760077 C =11345.110690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.030 3.970 10 C 0.083 3.917 11 N -0.691 5.691 12 C 0.093 3.907 13 C -0.070 4.070 14 C -0.066 4.066 15 C -0.057 4.057 16 C -0.116 4.116 17 Br -0.012 7.012 18 C 0.074 3.926 19 F -0.127 7.127 20 C 0.057 3.943 21 F -0.136 7.136 22 H 0.263 0.737 23 H -0.003 1.003 24 H -0.015 1.015 25 H 0.020 0.980 26 H 0.073 0.927 27 H 0.333 0.667 28 H 0.115 0.885 29 H 0.043 0.957 30 H 0.184 0.816 31 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.619 -26.716 -3.240 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.008 4.008 10 C -0.045 4.045 11 N -0.321 5.321 12 C -0.035 4.035 13 C -0.072 4.072 14 C -0.085 4.085 15 C -0.077 4.077 16 C -0.196 4.196 17 Br 0.073 6.927 18 C 0.052 3.948 19 F -0.106 7.106 20 C 0.036 3.964 21 F -0.115 7.115 22 H 0.072 0.928 23 H 0.016 0.984 24 H 0.004 0.996 25 H 0.038 0.962 26 H 0.092 0.908 27 H 0.149 0.851 28 H 0.133 0.867 29 H 0.061 0.939 30 H 0.202 0.798 31 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.019 -27.208 -3.831 27.551 hybrid contribution 0.253 1.469 1.878 2.398 sum 2.272 -25.739 -1.953 25.913 Atomic orbital electron populations 1.70116 1.07906 1.27743 1.51531 1.26000 0.95754 1.03488 0.94673 0.85358 0.79133 0.78579 0.77709 1.18322 1.20311 1.20608 1.21646 0.93654 0.92075 1.50708 0.91801 1.18939 0.94394 0.92465 0.95000 1.21836 0.95591 0.87565 0.99498 1.60681 1.19817 1.01760 1.49815 1.20997 0.93348 0.85781 1.03398 1.20114 0.97748 0.97500 0.91832 1.21461 0.96990 0.92426 0.97640 1.21523 0.93239 0.96121 0.96783 1.21968 1.05522 0.96758 0.95396 1.96794 1.71330 1.25438 1.99095 1.17456 0.98865 0.94647 0.83843 1.91543 1.80686 1.89513 1.48838 1.17693 1.03123 0.91185 0.84407 1.91513 1.94657 1.76211 1.49116 0.92777 0.98419 0.99640 0.96163 0.90847 0.85067 0.86651 0.93851 0.79846 0.79766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.56 5.23 29.85 0.16 1.72 16 10 C 0.08 3.37 5.62 86.30 0.49 3.86 16 11 N -0.69 -23.56 6.49 -517.92 -3.36 -26.93 16 12 C 0.09 2.31 5.50 85.56 0.47 2.78 16 13 C -0.07 -1.54 5.43 -19.82 -0.11 -1.65 16 14 C -0.07 -0.99 9.66 22.27 0.22 -0.77 16 15 C -0.06 -0.78 9.78 22.28 0.22 -0.56 16 16 C -0.12 -2.21 6.23 22.34 0.14 -2.07 16 17 Br -0.01 -0.21 33.28 -20.37 -0.68 -0.89 16 18 C 0.07 1.81 7.27 22.42 0.16 1.97 16 19 F -0.13 -3.45 16.65 44.97 0.75 -2.70 16 20 C 0.06 1.49 7.11 22.41 0.16 1.65 16 21 F -0.14 -4.15 16.29 44.97 0.73 -3.42 16 22 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 23 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 24 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 25 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.33 12.09 8.22 -89.69 -0.74 11.35 16 28 H 0.12 2.30 7.95 -2.39 -0.02 2.28 16 29 H 0.04 1.10 8.07 -2.39 -0.02 1.08 16 30 H 0.18 1.60 8.00 -2.91 -0.02 1.58 16 31 H 0.19 1.26 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -66.72 302.19 2.77 -63.94 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 0.43 Total: 3.98 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 2.59 Total: -23.15 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -3.08 Total: -83.83 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 1.48 Total: -6.12 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -0.68 Total: -0.89 kcal Total: -66.72 2.77 -63.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598971750.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.513 kcal (2) G-P(sol) polarization free energy of solvation -66.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds