Wall clock time and date at job start Tue Mar 31 2020 13:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38537 * 120.80448 * 2 1 4 4 C 1.38358 * 119.20826 * 179.97438 * 3 2 1 5 5 Cl 1.73604 * 119.57293 * 179.97438 * 4 3 2 6 6 N 1.31955 * 120.85745 * 359.74001 * 4 3 2 7 7 C 1.31858 * 121.76003 * 0.52557 * 6 4 3 8 8 C 1.38694 * 120.69879 * 359.47904 * 7 6 4 9 9 O 1.35930 * 120.45957 * 180.27831 * 8 7 6 10 10 S 1.52198 * 113.99519 * 275.63359 * 9 8 7 11 11 O 1.42109 * 104.27676 * 191.22819 * 10 9 8 12 12 O 1.42099 * 104.28112 * 319.08430 * 10 9 8 13 13 C 1.81394 * 104.44981 * 75.15962 * 10 9 8 14 14 C 1.53008 * 109.47263 * 174.22331 * 13 10 9 15 15 C 1.53005 * 109.46957 * 179.97438 * 14 13 10 16 16 C 1.50702 * 109.46512 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00511 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99571 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00228 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99815 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47053 * 90.00264 * 20 18 16 22 22 H 1.48501 * 109.47117 * 210.00163 * 20 18 16 23 23 H 1.48501 * 109.47139 * 330.00438 * 20 18 16 24 24 H 1.08996 * 109.47118 * 267.27965 * 1 2 3 25 25 H 1.08997 * 109.46829 * 27.28288 * 1 2 3 26 26 H 1.09000 * 109.46974 * 147.27747 * 1 2 3 27 27 H 1.07997 * 120.39147 * 359.95289 * 3 2 1 28 28 H 1.07998 * 119.64952 * 179.75823 * 7 6 4 29 29 H 1.08998 * 109.47329 * 294.22485 * 13 10 9 30 30 H 1.09000 * 109.47432 * 54.22390 * 13 10 9 31 31 H 1.09004 * 109.47075 * 299.99890 * 14 13 10 32 32 H 1.08998 * 109.46807 * 60.00241 * 14 13 10 33 33 H 1.08997 * 109.46914 * 299.99781 * 15 14 13 34 34 H 1.08998 * 109.47064 * 60.00522 * 15 14 13 35 35 H 0.96993 * 120.00505 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2165 1.1899 0.0000 4 6 3.5996 1.1514 0.0005 5 17 4.4981 2.6368 -0.0001 6 7 4.2446 0.0002 0.0062 7 6 3.6058 -1.1533 0.0012 8 6 2.2195 -1.1950 0.0006 9 8 1.5659 -2.3868 0.0012 10 16 1.3886 -2.9962 -1.3822 11 8 0.4729 -4.0640 -1.1800 12 8 1.0545 -1.8917 -2.2115 13 6 3.0309 -3.6381 -1.8079 14 6 2.9511 -4.4086 -3.1274 15 6 4.3365 -4.9494 -3.4867 16 6 4.2579 -5.7077 -4.7867 17 1 3.3144 -5.7948 -5.3049 18 6 5.3909 -6.2895 -5.3149 19 7 6.5400 -6.1830 -4.6842 20 14 5.2934 -7.2301 -6.9259 21 1 5.5440 -6.3014 -8.0573 22 1 6.3164 -8.3066 -6.9333 23 1 3.9424 -7.8299 -7.0679 24 1 -0.3633 -0.0488 1.0265 25 1 -0.3633 0.9133 -0.4711 26 1 -0.3633 -0.8646 -0.5555 27 1 1.6962 2.1363 -0.0008 28 1 4.1680 -2.0754 0.0022 29 1 3.7293 -2.8079 -1.9135 30 1 3.3763 -4.3051 -1.0180 31 1 2.2527 -5.2388 -3.0217 32 1 2.6058 -3.7415 -3.9172 33 1 5.0345 -4.1190 -3.5925 34 1 4.6822 -5.6164 -2.6969 35 1 7.3370 -6.5919 -5.0559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753848050.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:41 Heat of formation + Delta-G solvation = -88.663433 kcal Electronic energy + Delta-G solvation = -22310.245365 eV Core-core repulsion = 18654.990169 eV Total energy + Delta-G solvation = -3655.255196 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.86114 -39.45029 -37.24523 -37.03808 -36.15009 -34.85426 -34.42305 -32.29073 -31.02953 -28.54761 -27.94270 -24.76107 -23.80571 -23.06231 -21.30553 -20.39653 -18.61846 -18.34284 -17.75901 -17.27824 -16.74662 -16.04943 -15.66642 -15.07343 -14.90760 -14.53293 -14.40772 -13.99276 -13.64007 -13.56828 -13.25135 -12.86612 -12.69234 -12.49426 -12.31403 -12.17852 -12.10527 -12.00023 -11.90022 -11.70806 -11.37915 -10.96065 -10.92961 -10.48345 -10.23629 -10.12430 -10.02755 -9.54032 -9.38283 -9.18399 -8.43732 -6.08471 -4.12024 -0.25754 0.42535 0.54743 1.27228 1.95013 2.88654 3.28927 3.35278 3.38869 3.53647 3.76625 3.85650 3.89679 4.17821 4.29098 4.39799 4.61615 4.82058 4.94038 4.96379 5.06719 5.15645 5.21891 5.28094 5.52431 5.58907 5.70815 5.93126 6.15679 6.31404 6.77736 7.04006 7.51967 7.60975 7.88698 8.28251 8.93896 9.53007 11.02683 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.015342 B = 0.003478 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.558421 B = 8048.377105 C = 9378.784624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.000 4.000 3 C -0.141 4.141 4 C 0.187 3.813 5 Cl -0.014 7.014 6 N -0.454 5.454 7 C 0.120 3.880 8 C 0.024 3.976 9 O -0.661 6.661 10 S 2.574 3.426 11 O -0.924 6.924 12 O -0.953 6.953 13 C -0.633 4.633 14 C -0.102 4.102 15 C 0.030 3.970 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.161 0.839 28 H 0.186 0.814 29 H 0.131 0.869 30 H 0.138 0.862 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 16.717 13.263 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.010 4.010 3 C -0.162 4.162 4 C 0.022 3.978 5 Cl 0.015 6.985 6 N -0.166 5.166 7 C -0.040 4.040 8 C -0.021 4.021 9 O -0.618 6.618 10 S 2.673 3.327 11 O -0.922 6.922 12 O -0.951 6.951 13 C -0.763 4.763 14 C -0.141 4.141 15 C -0.008 4.008 16 C -0.567 4.567 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 H 0.110 0.890 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.179 0.821 28 H 0.202 0.798 29 H 0.149 0.851 30 H 0.156 0.844 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.770 16.860 13.419 23.265 hybrid contribution 0.014 -0.815 -0.937 1.242 sum -8.756 16.045 12.483 22.135 Atomic orbital electron populations 1.20932 0.88117 1.05056 1.03768 1.20451 0.98396 0.90564 0.91559 1.21737 0.92164 0.99475 1.02795 1.21854 0.89164 0.89152 0.97581 1.98435 1.76144 1.27816 1.96126 1.67207 1.39715 0.96743 1.12914 1.23201 0.89388 0.97112 0.94296 1.19010 0.91461 0.82151 1.09435 1.85768 1.77270 1.39339 1.59378 1.06176 0.78644 0.75158 0.72757 1.93635 1.59813 1.56155 1.82563 1.93625 1.83052 1.50789 1.67661 1.30878 1.21622 1.12695 1.11089 1.21509 1.04522 0.98329 0.89783 1.19082 0.88694 0.96204 0.96845 1.21225 0.95034 1.33729 1.06670 0.92334 1.25013 0.95376 0.96303 0.97596 1.69946 0.99406 1.44842 1.39068 0.86552 0.77934 0.79629 0.83679 1.20554 1.21139 1.19723 0.89031 0.89298 0.90283 0.82137 0.79751 0.85110 0.84360 0.91098 0.91479 0.95989 0.95928 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.69 36.01 0.35 -0.69 16 2 C 0.00 0.00 5.45 -104.18 -0.57 -0.57 16 3 C -0.14 -1.25 9.57 -39.43 -0.38 -1.63 16 4 C 0.19 1.98 7.27 -17.45 -0.13 1.85 16 5 Cl -0.01 -0.13 29.10 -51.86 -1.51 -1.64 16 6 N -0.45 -5.52 10.33 -10.24 -0.11 -5.63 16 7 C 0.12 1.37 9.64 -17.37 -0.17 1.20 16 8 C 0.02 0.29 4.70 -39.09 -0.18 0.10 16 9 O -0.66 -8.32 9.35 -51.84 -0.48 -8.80 16 10 S 2.57 37.77 4.93 -107.50 -0.53 37.24 16 11 O -0.92 -16.21 18.09 -67.04 -1.21 -17.43 16 12 O -0.95 -15.18 15.32 -67.04 -1.03 -16.21 16 13 C -0.63 -9.38 5.09 37.16 0.19 -9.20 16 14 C -0.10 -2.00 5.16 -26.72 -0.14 -2.13 16 15 C 0.03 0.74 4.97 -27.88 -0.14 0.60 16 16 C -0.53 -14.64 9.11 -34.44 -0.31 -14.96 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.08 0.82 6.33 -51.93 -0.33 0.49 16 27 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 28 H 0.19 1.68 6.99 -52.49 -0.37 1.31 16 29 H 0.13 1.73 6.58 -51.93 -0.34 1.39 16 30 H 0.14 1.74 8.14 -51.92 -0.42 1.32 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -33.93 328.33 -9.74 -43.67 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -3.96 Total: -3.12 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -1.57 Total: -23.85 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.63 Total: -31.16 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -2.72 Total: -42.43 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 37.77 SS G_CDS: -0.53 Total: 37.24 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.51 Total: -1.64 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.93 -9.74 -43.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753848050.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.994 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds