Wall clock time and date at job start Tue Mar 31 2020 12:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86802 * 119.99977 * 2 1 4 4 H 1.48495 * 109.46850 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47146 * 300.00461 * 3 2 1 6 6 H 1.48494 * 109.46891 * 60.00390 * 3 2 1 7 7 C 1.38952 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99959 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00126 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99375 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00132 * 179.97438 * 10 9 7 13 13 O 1.45201 * 109.47231 * 180.02562 * 12 10 9 14 14 C 1.34740 * 117.00334 * 180.02562 * 13 12 10 15 15 O 1.21504 * 119.99859 * 0.02562 * 14 13 12 16 16 C 1.47498 * 120.00341 * 180.02562 * 14 13 12 17 17 C 1.39765 * 120.14769 * 359.97438 * 16 14 13 18 18 C 1.37975 * 119.86077 * 180.02562 * 17 16 14 19 19 F 1.35103 * 119.91815 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.15944 * 0.02562 * 18 17 16 21 21 Cl 1.73608 * 119.84802 * 179.97438 * 20 18 17 22 22 C 1.38326 * 120.30494 * 0.02562 * 20 18 17 23 23 C 1.38253 * 120.13818 * 359.97438 * 22 20 18 24 24 F 1.35100 * 120.08323 * 180.02562 * 23 22 20 25 25 H 0.97001 * 119.99722 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00411 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.47354 * 60.00283 * 12 10 9 28 28 H 1.08996 * 109.47740 * 300.00291 * 12 10 9 29 29 H 1.08002 * 120.06870 * 0.30492 * 17 16 14 30 30 H 1.08006 * 119.93092 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8895 2.3963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2437 -4.8629 -0.0010 13 8 2.1872 -5.9666 -0.0017 14 6 1.6722 -7.2117 -0.0019 15 8 0.4677 -7.3709 -0.0019 16 6 2.5707 -8.3815 -0.0020 17 6 3.9568 -8.2020 -0.0026 18 6 4.7917 -9.3004 -0.0033 19 9 6.1317 -9.1283 -0.0033 20 6 4.2582 -10.5819 -0.0039 21 17 5.3163 -11.9583 -0.0055 22 6 2.8874 -10.7674 -0.0045 23 6 2.0393 -9.6756 -0.0038 24 9 0.7007 -9.8579 -0.0038 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3907 -0.0005 27 1 0.6160 -4.9205 -0.8903 28 1 0.6180 -4.9209 0.8896 29 1 4.3734 -7.2056 0.0021 30 1 2.4789 -11.7672 -0.0054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785607772.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:18 Heat of formation + Delta-G solvation = -202.215921 kcal Electronic energy + Delta-G solvation = -22998.948392 eV Core-core repulsion = 18649.095710 eV Total energy + Delta-G solvation = -4349.852682 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.025 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.27703 -50.21177 -41.86019 -40.28207 -39.76935 -37.87534 -37.59261 -36.04222 -33.44238 -33.03121 -31.49912 -30.06338 -26.85028 -25.78188 -24.39000 -22.53630 -21.46600 -20.09480 -19.83013 -19.08330 -18.77256 -18.13033 -17.95594 -17.70602 -17.19936 -17.19479 -16.65468 -16.50922 -15.92900 -15.77759 -15.73708 -15.50295 -15.07885 -14.67010 -14.15717 -14.10031 -13.99685 -13.68542 -13.56775 -13.13714 -12.95212 -12.61029 -12.46768 -12.32671 -12.10941 -11.96626 -11.92733 -11.58929 -10.53276 -10.52927 -10.12277 -9.98965 -8.52997 -6.03397 -1.11160 -0.45537 0.53666 0.97396 1.09617 1.34523 1.44110 1.58365 1.85590 1.96050 2.27948 2.56919 2.67316 2.89168 3.12790 3.12835 3.37549 3.53534 3.92380 4.02369 4.13054 4.16220 4.20522 4.27280 4.52081 4.61795 5.04755 5.14743 5.37253 5.88118 6.32318 6.48522 7.02485 7.39088 7.92023 8.64194 Molecular weight = 319.03amu Principal moments of inertia in cm(-1) A = 0.025346 B = 0.002581 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.446672 B =10843.996401 C =11933.299747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.438 3.562 11 O -0.616 6.616 12 C 0.072 3.928 13 O -0.332 6.332 14 C 0.508 3.492 15 O -0.509 6.509 16 C -0.138 4.138 17 C -0.050 4.050 18 C 0.090 3.910 19 F -0.119 7.119 20 C -0.009 4.009 21 Cl -0.011 7.011 22 C -0.110 4.110 23 C 0.169 3.831 24 F -0.110 7.110 25 H 0.281 0.719 26 H 0.400 0.600 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.170 0.830 30 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.751 -23.414 -0.003 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.005 4.005 13 O -0.247 6.247 14 C 0.352 3.648 15 O -0.399 6.399 16 C -0.140 4.140 17 C -0.069 4.069 18 C 0.069 3.931 19 F -0.097 7.097 20 C -0.038 4.038 21 Cl 0.018 6.982 22 C -0.129 4.129 23 C 0.148 3.852 24 F -0.088 7.088 25 H 0.090 0.910 26 H 0.235 0.765 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.188 0.812 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.139 -23.390 -0.003 23.948 hybrid contribution -0.338 1.003 -0.001 1.058 sum 4.802 -22.387 -0.004 22.896 Atomic orbital electron populations 1.69677 1.06949 1.29672 1.49237 1.26121 0.96569 1.02589 0.95692 0.84807 0.78123 0.76640 0.78399 1.19497 1.19522 1.19511 1.19750 0.92945 0.83303 1.50492 0.89685 1.41738 1.09609 1.04169 1.63963 1.20027 0.88075 0.85271 0.84218 1.90532 1.15321 1.87653 1.56733 1.22625 0.90008 0.81976 1.05902 1.86559 1.40400 1.14284 1.83417 1.21008 0.87047 0.83502 0.73206 1.90906 1.16158 1.86839 1.45982 1.18944 0.93120 0.90041 1.11930 1.21367 0.90621 1.00552 0.94370 1.17148 0.78410 0.91943 1.05555 1.91603 1.28385 1.96010 1.93731 1.21002 0.92343 0.88251 1.02176 1.98448 1.64137 1.39494 1.96110 1.21031 0.89399 1.00647 1.01817 1.17464 0.78305 0.91365 0.98032 1.91644 1.28878 1.95681 1.92598 0.90972 0.76517 0.87078 0.87084 0.81235 0.78258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.00 13.05 21.66 0.28 -47.72 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 3 Si 1.00 41.50 29.55 68.60 2.03 43.53 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.34 -18.51 9.68 84.04 0.81 -17.69 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.89 5.29 -306.99 -1.62 -29.51 16 10 C 0.44 20.64 7.86 87.65 0.69 21.33 16 11 O -0.62 -33.79 16.08 15.73 0.25 -33.54 16 12 C 0.07 2.58 5.95 71.23 0.42 3.00 16 13 O -0.33 -11.58 9.00 -50.12 -0.45 -12.03 16 14 C 0.51 15.41 7.89 70.26 0.55 15.96 16 15 O -0.51 -17.12 15.13 19.82 0.30 -16.82 16 16 C -0.14 -3.22 5.88 -20.07 -0.12 -3.34 16 17 C -0.05 -1.05 9.59 22.58 0.22 -0.83 16 18 C 0.09 1.64 7.26 22.34 0.16 1.80 16 19 F -0.12 -2.38 16.82 44.97 0.76 -1.62 16 20 C -0.01 -0.14 6.33 22.43 0.14 0.00 16 21 Cl -0.01 -0.15 28.60 -2.72 -0.08 -0.22 16 22 C -0.11 -1.40 9.79 22.29 0.22 -1.18 16 23 C 0.17 3.24 7.28 22.67 0.17 3.41 16 24 F -0.11 -2.50 15.54 44.97 0.70 -1.80 16 25 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 26 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 27 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 28 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 29 H 0.17 3.86 7.61 -2.91 -0.02 3.84 16 30 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -66.35 308.70 6.41 -59.94 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.51 Total: 17.33 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: 3.73 Total: 22.46 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -1.34 Total: -77.23 kcal Atomic # 8 Polarization: -62.49 SS G_CDS: 0.10 Total: -62.38 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 1.46 Total: -3.42 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.22 kcal Total: -66.35 6.41 -59.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785607772.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.277 kcal (2) G-P(sol) polarization free energy of solvation -66.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds