Wall clock time and date at job start Tue Mar 31 2020 11:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00068 * 2 1 4 4 H 1.48503 * 109.47491 * 240.00222 * 3 2 1 5 5 H 1.48503 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47260 * 120.00114 * 3 2 1 7 7 C 1.37879 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99625 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00623 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47452 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47015 * 179.97438 * 10 9 7 12 12 O 1.20828 * 119.99948 * 0.02562 * 11 10 9 13 13 O 1.34223 * 119.99911 * 179.97438 * 11 10 9 14 14 C 1.45208 * 117.00038 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47038 * 180.02562 * 14 13 11 16 16 N 1.29003 * 124.90278 * 90.00139 * 15 14 13 17 17 C 1.31814 * 117.13230 * 179.97438 * 16 15 14 18 18 C 1.33732 * 114.47119 * 0.02562 * 17 16 15 19 19 Br 1.89096 * 126.04289 * 179.97438 * 18 17 16 20 20 S 1.70970 * 124.90848 * 269.99844 * 15 14 13 21 21 H 0.96994 * 120.00315 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47231 * 59.99648 * 9 7 2 23 23 H 1.09004 * 109.46814 * 300.00421 * 9 7 2 24 24 H 1.08999 * 109.47131 * 60.00182 * 10 9 7 25 25 H 1.08995 * 109.47172 * 299.99687 * 10 9 7 26 26 H 1.09000 * 109.46693 * 60.00317 * 14 13 11 27 27 H 1.08995 * 109.46964 * 300.00268 * 14 13 11 28 28 H 1.08001 * 122.76665 * 179.72786 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 8 0.2835 -4.9672 -0.0033 13 8 2.1629 -6.1296 -0.0047 14 6 1.3721 -7.3474 -0.0057 15 6 2.2901 -8.5425 -0.0067 16 7 2.7397 -9.1288 1.0509 17 6 3.5349 -10.1647 0.8718 18 6 3.7692 -10.4683 -0.4093 19 35 4.8562 -11.8827 -1.0367 20 16 2.8862 -9.3173 -1.4093 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5564 -0.8920 23 1 0.6240 -2.5575 0.8880 24 1 2.8720 -3.6052 0.8873 25 1 2.8719 -3.6036 -0.8927 26 1 0.7430 -7.3713 -0.8956 27 1 0.7436 -7.3732 0.8844 28 1 3.9659 -10.7194 1.6922 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614404.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:20 Heat of formation + Delta-G solvation = -46.698861 kcal Electronic energy + Delta-G solvation = -15552.711802 eV Core-core repulsion = 12549.015546 eV Total energy + Delta-G solvation = -3003.696256 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 318.966 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.39256 -39.83525 -36.37981 -33.63354 -32.99189 -31.35223 -30.61868 -27.70769 -25.97155 -24.24612 -22.24035 -20.30785 -19.95280 -18.74888 -17.51148 -16.54682 -16.27417 -16.05771 -15.33130 -14.94269 -14.48073 -14.31562 -13.70709 -13.38713 -12.54439 -12.34797 -12.30652 -12.27660 -11.76465 -11.26259 -10.96240 -10.89820 -10.69040 -10.67112 -10.13371 -10.08658 -10.02887 -9.66932 -9.65549 -9.30552 -9.20765 -8.39725 -6.03734 -4.08934 -0.06423 0.37778 1.05826 1.29212 2.14907 2.68462 3.02450 3.31933 3.36753 3.38711 3.75386 4.42632 4.49182 4.73833 4.93829 5.12419 5.31799 5.45679 5.53000 6.05887 6.12872 6.48723 6.80264 7.15894 7.62695 7.68903 7.94688 8.14012 8.32891 8.97669 9.55345 11.07203 Molecular weight = 318.97amu Principal moments of inertia in cm(-1) A = 0.041707 B = 0.002212 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.187691 B =12654.949358 C =12989.348711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.101 4.101 11 C 0.461 3.539 12 O -0.500 6.500 13 O -0.359 6.359 14 C 0.137 3.863 15 C 0.055 3.945 16 N -0.450 5.450 17 C 0.087 3.913 18 C -0.258 4.258 19 Br 0.029 6.971 20 S 0.218 5.782 21 H 0.263 0.737 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.448 -27.172 -3.052 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.139 4.139 11 C 0.304 3.696 12 O -0.386 6.386 13 O -0.277 6.277 14 C 0.060 3.940 15 C -0.222 4.222 16 N -0.166 5.166 17 C -0.069 4.069 18 C -0.459 4.459 19 Br 0.112 6.888 20 S 0.472 5.528 21 H 0.073 0.927 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 8.985 -27.190 -3.866 28.896 hybrid contribution 0.501 0.558 0.925 1.191 sum 9.486 -26.631 -2.941 28.423 Atomic orbital electron populations 1.69974 1.06100 1.26940 1.49729 1.25009 0.94854 0.99329 0.95035 0.86593 0.79511 0.82844 0.78660 1.20152 1.21232 1.20150 1.21106 0.93060 0.90594 1.52106 0.92321 1.19039 0.93208 0.89185 0.99002 1.21822 1.00766 0.87075 1.04252 1.24909 0.88057 0.85114 0.71489 1.90658 1.15722 1.87336 1.44865 1.86633 1.41711 1.14156 1.85207 1.21157 0.89566 0.78137 1.05164 1.26781 1.02314 1.01302 0.91817 1.66442 1.10848 1.08046 1.31266 1.21943 0.95882 0.94046 0.95055 1.27929 1.12177 1.06385 0.99430 1.96754 1.63968 1.40322 1.87764 1.84190 1.38636 1.20125 1.09825 0.92750 0.95498 0.95469 0.88704 0.88731 0.88640 0.87786 0.79645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 15 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.93 15 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 15 9 C 0.03 0.85 4.26 -27.89 -0.12 0.73 15 10 C -0.10 -2.01 5.75 -27.88 -0.16 -2.17 15 11 C 0.46 8.70 7.96 36.01 0.29 8.98 15 12 O -0.50 -10.82 15.73 -18.75 -0.29 -11.11 15 13 O -0.36 -5.74 10.20 -39.24 -0.40 -6.14 15 14 C 0.14 1.79 6.04 36.00 0.22 2.01 15 15 C 0.06 0.66 7.03 -13.47 -0.09 0.56 15 16 N -0.45 -5.60 10.54 -11.84 -0.12 -5.72 15 17 C 0.09 0.87 11.30 -19.14 -0.22 0.65 15 18 C -0.26 -2.42 7.08 29.15 0.21 -2.21 15 19 Br 0.03 0.22 34.09 -68.01 -2.32 -2.09 15 20 S 0.22 2.10 23.18 -107.50 -2.49 -0.40 15 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 22 H 0.03 0.75 8.10 -51.93 -0.42 0.32 15 23 H 0.03 0.76 8.10 -51.93 -0.42 0.34 15 24 H 0.09 1.74 8.14 -51.93 -0.42 1.32 15 25 H 0.09 1.70 8.14 -51.93 -0.42 1.28 15 26 H 0.10 1.08 8.13 -51.93 -0.42 0.66 15 27 H 0.10 1.36 8.13 -51.93 -0.42 0.94 15 28 H 0.19 1.37 8.06 -52.49 -0.42 0.95 15 LS Contribution 294.74 15.07 4.44 4.44 Total: -1.00 -31.58 294.74 -8.26 -39.84 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -2.50 Total: -4.31 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.29 Total: -4.78 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.61 Total: -31.65 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.70 Total: -17.25 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.49 Total: -0.40 kcal Atomic # 35 Polarization: 0.22 SS G_CDS: -2.32 Total: -2.09 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.58 -8.26 -39.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614404.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.858 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds