Wall clock time and date at job start Tue Mar 31 2020 11:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00068 * 2 1 4 4 H 1.48503 * 109.47491 * 240.00222 * 3 2 1 5 5 H 1.48503 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47260 * 120.00114 * 3 2 1 7 7 C 1.37879 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99625 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00623 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47452 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47015 * 179.97438 * 10 9 7 12 12 O 1.20828 * 119.99948 * 0.02562 * 11 10 9 13 13 O 1.34223 * 119.99911 * 179.97438 * 11 10 9 14 14 C 1.45208 * 117.00038 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47038 * 180.02562 * 14 13 11 16 16 N 1.29003 * 124.90278 * 90.00139 * 15 14 13 17 17 C 1.31814 * 117.13230 * 179.97438 * 16 15 14 18 18 C 1.33732 * 114.47119 * 0.02562 * 17 16 15 19 19 Br 1.89096 * 126.04289 * 179.97438 * 18 17 16 20 20 S 1.70970 * 124.90848 * 269.99844 * 15 14 13 21 21 H 0.96994 * 120.00315 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47231 * 59.99648 * 9 7 2 23 23 H 1.09004 * 109.46814 * 300.00421 * 9 7 2 24 24 H 1.08999 * 109.47131 * 60.00182 * 10 9 7 25 25 H 1.08995 * 109.47172 * 299.99687 * 10 9 7 26 26 H 1.09000 * 109.46693 * 60.00317 * 14 13 11 27 27 H 1.08995 * 109.46964 * 300.00268 * 14 13 11 28 28 H 1.08001 * 122.76665 * 179.72786 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 8 0.2835 -4.9672 -0.0033 13 8 2.1629 -6.1296 -0.0047 14 6 1.3721 -7.3474 -0.0057 15 6 2.2901 -8.5425 -0.0067 16 7 2.7397 -9.1288 1.0509 17 6 3.5349 -10.1647 0.8718 18 6 3.7692 -10.4683 -0.4093 19 35 4.8562 -11.8827 -1.0367 20 16 2.8862 -9.3173 -1.4093 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5564 -0.8920 23 1 0.6240 -2.5575 0.8880 24 1 2.8720 -3.6052 0.8873 25 1 2.8719 -3.6036 -0.8927 26 1 0.7430 -7.3713 -0.8956 27 1 0.7436 -7.3732 0.8844 28 1 3.9659 -10.7194 1.6922 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614404.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:20 Heat of formation + Delta-G solvation = -65.824412 kcal Electronic energy + Delta-G solvation = -15553.541148 eV Core-core repulsion = 12549.015546 eV Total energy + Delta-G solvation = -3004.525602 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 318.966 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.65857 -40.86313 -37.80854 -35.64313 -33.81603 -33.15199 -31.62886 -28.76418 -27.72394 -25.25650 -24.00352 -21.56573 -21.16378 -19.59996 -19.14977 -18.20640 -17.64762 -17.33985 -16.48487 -16.44411 -15.80243 -15.50220 -14.93971 -14.59565 -14.22851 -13.88644 -13.77579 -13.18035 -13.08736 -12.78783 -12.54556 -12.50607 -12.01433 -11.90844 -11.76604 -11.57928 -11.50874 -11.30308 -10.89781 -10.55140 -10.42855 -10.09339 -8.18425 -6.31994 -0.89844 -0.38254 0.29286 0.50972 1.17483 1.22939 1.45381 1.48784 1.56526 1.86360 2.44584 2.82354 3.15627 3.60023 3.86414 3.98863 4.03192 4.20178 4.45503 4.46151 4.76959 4.88832 5.23519 5.48456 5.56974 5.82037 6.14404 6.35153 6.71138 6.86251 7.38235 8.93857 Molecular weight = 318.97amu Principal moments of inertia in cm(-1) A = 0.041707 B = 0.002212 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.187691 B =12654.949358 C =12989.348711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.077 0.923 9 C 0.037 3.963 10 C -0.094 4.094 11 C 0.472 3.528 12 O -0.535 6.535 13 O -0.353 6.353 14 C 0.134 3.866 15 C 0.029 3.971 16 N -0.472 5.472 17 C 0.078 3.922 18 C -0.258 4.258 19 Br 0.049 6.951 20 S 0.258 5.742 21 H 0.264 0.736 22 H -0.006 1.006 23 H -0.009 1.009 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.706 -27.966 -3.527 30.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.095 0.905 9 C 0.000 4.000 10 C -0.131 4.131 11 C 0.317 3.683 12 O -0.424 6.424 13 O -0.269 6.269 14 C 0.057 3.943 15 C -0.247 4.247 16 N -0.190 5.190 17 C -0.077 4.077 18 C -0.459 4.459 19 Br 0.132 6.868 20 S 0.512 5.488 21 H 0.072 0.928 22 H 0.012 0.988 23 H 0.010 0.990 24 H 0.133 0.867 25 H 0.137 0.863 26 H 0.129 0.871 27 H 0.117 0.883 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 11.276 -28.012 -4.344 30.507 hybrid contribution -0.162 0.617 1.038 1.219 sum 11.114 -27.395 -3.306 29.748 Atomic orbital electron populations 1.70140 1.08163 1.27984 1.51140 1.26056 0.95697 1.03724 0.94497 0.85392 0.78075 0.77482 0.79424 1.18728 1.21334 1.18898 1.21615 0.94110 0.91331 1.51308 0.90504 1.18819 0.93693 0.91755 0.95732 1.21555 0.99430 0.85689 1.06412 1.24519 0.87243 0.85832 0.70709 1.90652 1.17152 1.87970 1.46626 1.86565 1.41590 1.14324 1.84455 1.21356 0.89883 0.77209 1.05869 1.26542 1.03471 1.01570 0.93123 1.66425 1.11444 1.08961 1.32141 1.22251 0.95684 0.93748 0.96046 1.28157 1.11760 1.06568 0.99409 1.96788 1.63281 1.39270 1.87484 1.84024 1.37527 1.19202 1.08096 0.92756 0.98751 0.99031 0.86724 0.86258 0.87071 0.88255 0.77539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.13 15 2 C 0.00 -0.10 5.46 84.66 0.46 0.37 15 3 Si 0.97 43.22 29.54 68.60 2.03 45.25 15 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 15 5 H -0.29 -12.71 7.11 99.48 0.71 -12.01 15 6 H -0.26 -11.17 7.11 99.48 0.71 -10.47 15 7 C -0.55 -30.03 9.11 25.60 0.23 -29.80 15 8 H 0.08 3.85 7.74 -2.91 -0.02 3.83 15 9 C 0.04 1.98 4.26 29.85 0.13 2.10 15 10 C -0.09 -3.65 5.75 29.85 0.17 -3.48 15 11 C 0.47 17.78 7.96 71.24 0.57 18.35 15 12 O -0.54 -23.74 15.73 21.96 0.35 -23.40 15 13 O -0.35 -10.95 10.20 -51.34 -0.52 -11.48 15 14 C 0.13 3.42 6.04 71.24 0.43 3.85 15 15 C 0.03 0.66 7.03 88.52 0.62 1.28 15 16 N -0.47 -11.25 10.54 -191.38 -2.02 -13.26 15 17 C 0.08 1.43 11.30 83.67 0.95 2.37 15 18 C -0.26 -4.30 7.08 66.80 0.47 -3.82 15 19 Br 0.05 0.64 34.09 -20.37 -0.69 -0.05 15 20 S 0.26 4.48 23.18 -56.49 -1.31 3.17 15 21 H 0.26 15.24 8.31 -92.71 -0.77 14.47 15 22 H -0.01 -0.35 8.10 -2.38 -0.02 -0.37 15 23 H -0.01 -0.52 8.10 -2.38 -0.02 -0.54 15 24 H 0.11 4.03 8.14 -2.39 -0.02 4.01 15 25 H 0.12 4.07 8.14 -2.39 -0.02 4.05 15 26 H 0.11 2.46 8.13 -2.39 -0.02 2.44 15 27 H 0.10 2.62 8.13 -2.39 -0.02 2.60 15 28 H 0.21 2.63 8.06 -2.91 -0.02 2.61 15 Total: -1.00 -68.70 294.74 3.33 -65.37 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 1.19 Total: 0.31 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 4.03 Total: -8.77 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -1.73 Total: -70.39 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.18 Total: -34.88 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.31 Total: 3.17 kcal Atomic # 35 Polarization: 0.64 SS G_CDS: -0.69 Total: -0.05 kcal Total: -68.70 3.33 -65.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614404.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.455 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds