Wall clock time and date at job start Tue Mar 31 2020 12:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.34966 * 116.99954 * 2 1 4 4 O 1.21686 * 119.99895 * 0.02562 * 3 2 1 5 5 C 1.41688 * 120.00140 * 180.02562 * 3 2 1 6 6 C 1.36866 * 126.11650 * 179.97438 * 5 3 2 7 7 N 1.30755 * 114.02482 * 180.02562 * 6 5 3 8 8 C 1.30354 * 117.27028 * 359.97438 * 7 6 5 9 9 S 1.76199 * 124.74520 * 179.73333 * 8 7 6 10 10 C 1.80999 * 100.00173 * 0.02831 * 9 8 7 11 11 C 1.52992 * 109.47309 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47226 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47327 * 180.02562 * 12 11 10 14 14 C 1.76201 * 100.00126 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99991 * 0.02562 * 14 13 12 16 16 C 1.38799 * 119.99856 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99921 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99710 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47268 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46949 * 120.00167 * 18 16 14 21 21 H 1.48504 * 109.46779 * 239.99595 * 18 16 14 22 22 S 1.70919 * 110.50973 * 0.02562 * 8 7 6 23 23 H 1.09004 * 109.46789 * 299.99881 * 1 2 3 24 24 H 1.08996 * 109.47428 * 59.99315 * 1 2 3 25 25 H 1.09000 * 109.46931 * 180.02562 * 1 2 3 26 26 H 1.08005 * 122.98647 * 0.06079 * 6 5 3 27 27 H 1.09000 * 109.46910 * 299.99944 * 10 9 8 28 28 H 1.09003 * 109.47210 * 59.99446 * 10 9 8 29 29 H 1.09000 * 109.47165 * 299.99881 * 11 10 9 30 30 H 1.08997 * 109.47236 * 60.00070 * 11 10 9 31 31 H 1.09000 * 109.47001 * 300.00042 * 12 11 10 32 32 H 1.08996 * 109.47315 * 60.00275 * 12 11 10 33 33 H 0.97000 * 119.99716 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2026 0.0000 4 8 1.3789 2.2231 0.0005 5 6 3.4566 1.2768 -0.0005 6 6 4.2044 2.4231 -0.0011 7 7 5.4955 2.2166 -0.0021 8 6 5.9022 0.9781 -0.0019 9 16 7.5910 0.4757 -0.0098 10 6 8.4005 2.0946 -0.0162 11 6 9.9187 1.9057 -0.0230 12 6 10.6030 3.2742 -0.0291 13 16 12.3991 3.0507 -0.0379 14 6 12.9170 4.7348 -0.0430 15 1 12.1818 5.5259 -0.0399 16 6 14.2699 5.0448 -0.0498 17 7 15.1660 4.0806 -0.0520 18 14 14.8190 6.8303 -0.0544 19 1 13.6263 7.7150 -0.0503 20 1 15.6394 7.0990 1.1539 21 1 15.6279 7.0963 -1.2711 22 16 4.5681 -0.0903 -0.0010 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.7668 3.4106 -0.0002 27 1 8.0989 2.6481 -0.9054 28 1 8.1079 2.6507 0.8745 29 1 10.2200 1.3524 0.8665 30 1 10.2117 1.3495 -0.9135 31 1 10.3016 3.8271 -0.9188 32 1 10.3102 3.8307 0.8611 33 1 16.1115 4.2973 -0.0563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829680666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:25 Heat of formation + Delta-G solvation = -56.138638 kcal Electronic energy + Delta-G solvation = -17968.988843 eV Core-core repulsion = 14759.940606 eV Total energy + Delta-G solvation = -3209.048237 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 319.016 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.06189 -39.75926 -36.93886 -34.49916 -32.47034 -31.68180 -28.48471 -27.21629 -26.55861 -25.51585 -23.10469 -21.74497 -20.66886 -19.66362 -17.75323 -17.53482 -17.21725 -16.97556 -16.41191 -15.56265 -15.08716 -14.94571 -14.84393 -14.71248 -14.11714 -14.04002 -13.68714 -13.14384 -12.72238 -12.62020 -11.98107 -11.95978 -11.91550 -11.21180 -11.15400 -11.11983 -11.05435 -10.73818 -10.72797 -10.66358 -10.31032 -10.26445 -9.87005 -9.62296 -9.10655 -8.38258 -7.96600 -6.59251 -6.27236 -3.98354 -0.47374 0.39744 1.03651 1.19913 1.75778 1.85850 2.35849 2.56148 3.18989 3.19773 3.28060 3.50193 4.07011 4.17607 4.53092 4.68998 4.75951 4.76914 4.93794 5.01872 5.09513 5.12221 5.30725 5.46737 5.52018 5.65769 5.86161 5.86466 6.12133 6.35721 6.58040 6.98079 7.24650 7.57348 8.32936 9.19543 10.80994 Molecular weight = 319.02amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.001978 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.504611 B =14155.359424 C =14864.791106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.552 3.448 4 O -0.501 6.501 5 C -0.331 4.331 6 C 0.173 3.827 7 N -0.488 5.488 8 C 0.027 3.973 9 S 0.019 5.981 10 C -0.098 4.098 11 C -0.088 4.088 12 C -0.109 4.109 13 S -0.128 6.128 14 C -0.517 4.517 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.869 5.869 18 Si 0.919 3.081 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 S 0.267 5.733 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.104 0.896 26 H 0.194 0.806 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.060 -11.032 0.117 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.397 3.603 4 O -0.391 6.391 5 C -0.458 4.458 6 C 0.007 3.993 7 N -0.206 5.206 8 C -0.352 4.352 9 S 0.255 5.745 10 C -0.249 4.249 11 C -0.128 4.128 12 C -0.259 4.259 13 S 0.100 5.900 14 C -0.665 4.665 15 H 0.092 0.908 16 C -0.138 4.138 17 N -0.505 5.505 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 S 0.522 5.478 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.122 0.878 26 H 0.211 0.789 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.537 -13.632 0.113 28.070 hybrid contribution -1.519 4.482 0.003 4.732 sum -26.056 -9.151 0.116 27.616 Atomic orbital electron populations 1.22939 0.76183 1.03942 1.02697 1.86196 1.23877 1.32342 1.84706 1.18048 0.86804 0.81999 0.73449 1.90929 1.66070 1.35510 1.46596 1.23840 0.96188 0.98279 1.27445 1.22601 0.86367 0.99285 0.90999 1.66920 1.15475 1.18022 1.20229 1.29302 1.07116 0.95895 1.02884 1.85990 0.87379 1.13481 1.87630 1.23879 0.98964 0.94461 1.07630 1.21139 0.89164 0.98483 1.04025 1.23239 1.01877 0.97398 1.03432 1.84643 0.94597 1.13887 1.96892 1.22728 0.94511 0.90698 1.58588 0.90775 1.25020 0.95602 0.98633 0.94517 1.70024 1.01402 1.31839 1.47195 0.86099 0.78694 0.82746 0.77919 1.19571 1.20534 1.20538 1.83981 0.92751 1.06934 1.64170 0.91895 0.91887 0.87762 0.78886 0.88203 0.88200 0.90356 0.90364 0.91680 0.91678 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.45 101.05 1.06 1.27 16 2 O -0.35 -3.17 10.27 -41.22 -0.42 -3.60 16 3 C 0.55 5.91 7.73 32.05 0.25 6.15 16 4 O -0.50 -6.35 16.55 -19.41 -0.32 -6.68 16 5 C -0.33 -3.41 6.32 -38.76 -0.25 -3.65 16 6 C 0.17 1.84 11.07 -18.51 -0.20 1.63 16 7 N -0.49 -5.79 9.76 -14.12 -0.14 -5.92 16 8 C 0.03 0.30 7.45 52.14 0.39 0.69 16 9 S 0.02 0.21 22.29 -107.50 -2.40 -2.19 16 10 C -0.10 -1.21 5.13 37.15 0.19 -1.02 16 11 C -0.09 -1.30 5.22 -26.73 -0.14 -1.44 16 12 C -0.11 -2.07 5.67 37.16 0.21 -1.86 16 13 S -0.13 -3.25 21.44 -107.50 -2.30 -5.55 16 14 C -0.52 -14.56 9.50 30.94 0.29 -14.27 16 15 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 16 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 17 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 18 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 S 0.27 2.40 22.96 -107.50 -2.47 -0.07 16 23 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 24 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 25 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.19 1.73 8.04 -52.48 -0.42 1.31 16 27 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 28 H 0.10 1.24 8.14 -51.91 -0.42 0.82 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 32 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -32.07 338.80 -9.30 -41.37 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -3.77 Total: -3.31 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 1.70 Total: -10.59 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.60 Total: -30.78 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.74 Total: -10.27 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -7.17 Total: -7.81 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.07 -9.30 -41.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829680666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.764 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds