Wall clock time and date at job start Tue Mar 31 2020 12:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.34966 * 116.99954 * 2 1 4 4 O 1.21686 * 119.99895 * 0.02562 * 3 2 1 5 5 C 1.41688 * 120.00140 * 180.02562 * 3 2 1 6 6 C 1.36866 * 126.11650 * 179.97438 * 5 3 2 7 7 N 1.30755 * 114.02482 * 180.02562 * 6 5 3 8 8 C 1.30354 * 117.27028 * 359.97438 * 7 6 5 9 9 S 1.76199 * 124.74520 * 179.73333 * 8 7 6 10 10 C 1.80999 * 100.00173 * 0.02831 * 9 8 7 11 11 C 1.52992 * 109.47309 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47226 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47327 * 180.02562 * 12 11 10 14 14 C 1.76201 * 100.00126 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99991 * 0.02562 * 14 13 12 16 16 C 1.38799 * 119.99856 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99921 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99710 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47268 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46949 * 120.00167 * 18 16 14 21 21 H 1.48504 * 109.46779 * 239.99595 * 18 16 14 22 22 S 1.70919 * 110.50973 * 0.02562 * 8 7 6 23 23 H 1.09004 * 109.46789 * 299.99881 * 1 2 3 24 24 H 1.08996 * 109.47428 * 59.99315 * 1 2 3 25 25 H 1.09000 * 109.46931 * 180.02562 * 1 2 3 26 26 H 1.08005 * 122.98647 * 0.06079 * 6 5 3 27 27 H 1.09000 * 109.46910 * 299.99944 * 10 9 8 28 28 H 1.09003 * 109.47210 * 59.99446 * 10 9 8 29 29 H 1.09000 * 109.47165 * 299.99881 * 11 10 9 30 30 H 1.08997 * 109.47236 * 60.00070 * 11 10 9 31 31 H 1.09000 * 109.47001 * 300.00042 * 12 11 10 32 32 H 1.08996 * 109.47315 * 60.00275 * 12 11 10 33 33 H 0.97000 * 119.99716 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2026 0.0000 4 8 1.3789 2.2231 0.0005 5 6 3.4566 1.2768 -0.0005 6 6 4.2044 2.4231 -0.0011 7 7 5.4955 2.2166 -0.0021 8 6 5.9022 0.9781 -0.0019 9 16 7.5910 0.4757 -0.0098 10 6 8.4005 2.0946 -0.0162 11 6 9.9187 1.9057 -0.0230 12 6 10.6030 3.2742 -0.0291 13 16 12.3991 3.0507 -0.0379 14 6 12.9170 4.7348 -0.0430 15 1 12.1818 5.5259 -0.0399 16 6 14.2699 5.0448 -0.0498 17 7 15.1660 4.0806 -0.0520 18 14 14.8190 6.8303 -0.0544 19 1 13.6263 7.7150 -0.0503 20 1 15.6394 7.0990 1.1539 21 1 15.6279 7.0963 -1.2711 22 16 4.5681 -0.0903 -0.0010 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.7668 3.4106 -0.0002 27 1 8.0989 2.6481 -0.9054 28 1 8.1079 2.6507 0.8745 29 1 10.2200 1.3524 0.8665 30 1 10.2117 1.3495 -0.9135 31 1 10.3016 3.8271 -0.9188 32 1 10.3102 3.8307 0.8611 33 1 16.1115 4.2973 -0.0563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829680666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:25 Heat of formation + Delta-G solvation = -74.672827 kcal Electronic energy + Delta-G solvation = -17969.792546 eV Core-core repulsion = 14759.940606 eV Total energy + Delta-G solvation = -3209.851940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 319.016 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.83965 -40.55425 -37.71208 -35.76698 -34.59939 -32.48220 -29.15995 -28.53675 -27.59820 -27.28387 -23.87060 -23.00463 -21.50186 -20.45334 -19.57377 -18.54600 -18.00539 -17.70114 -17.29197 -16.89728 -16.67657 -16.24831 -15.85125 -15.79029 -15.27895 -14.95640 -14.72247 -14.41635 -14.00256 -13.56150 -13.41891 -13.16254 -12.95517 -12.84390 -12.67411 -12.44211 -12.02343 -11.98582 -11.85017 -11.79243 -11.45055 -11.15978 -11.15402 -11.06168 -10.63115 -10.33657 -8.79822 -8.66227 -8.38040 -6.13717 -1.28128 -0.41785 0.23496 0.39962 0.89779 0.93897 1.32723 1.38291 1.49681 1.68076 1.75337 1.75754 2.27381 2.96689 3.27826 3.30247 3.77979 3.83363 3.92642 4.04620 4.13403 4.28238 4.32097 4.33191 4.63273 4.70149 4.73676 4.78282 4.99425 5.15801 5.17524 5.40739 6.18088 6.18348 6.48096 7.05015 8.71446 Molecular weight = 319.02amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.001978 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.504611 B =14155.359424 C =14864.791106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.554 3.446 4 O -0.526 6.526 5 C -0.341 4.341 6 C 0.166 3.834 7 N -0.506 5.506 8 C 0.005 3.995 9 S 0.040 5.960 10 C -0.093 4.093 11 C -0.077 4.077 12 C -0.086 4.086 13 S -0.189 6.189 14 C -0.539 4.539 15 H 0.073 0.927 16 C 0.016 3.984 17 N -0.906 5.906 18 Si 0.993 3.007 19 H -0.264 1.264 20 H -0.272 1.272 21 H -0.272 1.272 22 S 0.327 5.673 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.136 0.864 26 H 0.203 0.797 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.554 -11.319 0.122 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.400 3.600 4 O -0.419 6.419 5 C -0.468 4.468 6 C 0.000 4.000 7 N -0.225 5.225 8 C -0.374 4.374 9 S 0.275 5.725 10 C -0.245 4.245 11 C -0.117 4.117 12 C -0.237 4.237 13 S 0.039 5.961 14 C -0.687 4.687 15 H 0.091 0.909 16 C -0.189 4.189 17 N -0.543 5.543 18 Si 0.815 3.185 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.197 1.197 22 S 0.582 5.418 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.154 0.846 26 H 0.220 0.780 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.039 -13.947 0.119 29.540 hybrid contribution -1.240 4.439 0.002 4.609 sum -27.280 -9.509 0.121 28.890 Atomic orbital electron populations 1.23261 0.74475 1.06098 1.02729 1.86190 1.25574 1.31245 1.84190 1.18125 0.86906 0.82171 0.72840 1.90914 1.66653 1.36409 1.47902 1.23990 0.96498 0.99081 1.27253 1.22760 0.86135 0.99988 0.91088 1.66932 1.16137 1.18685 1.20787 1.29393 1.07697 0.96526 1.03745 1.85845 0.87276 1.11316 1.88034 1.23620 0.97157 0.95999 1.07719 1.20976 0.90637 0.95831 1.04275 1.23159 0.96908 1.00121 1.03507 1.84592 1.00748 1.13697 1.97047 1.23082 0.95147 0.91680 1.58768 0.90885 1.26035 0.95601 1.03455 0.93794 1.70148 1.01857 1.34241 1.48007 0.84988 0.78375 0.76874 0.78282 1.18759 1.19702 1.19708 1.83747 0.90712 1.04972 1.62345 0.91894 0.91885 0.84555 0.78018 0.88178 0.88176 0.90144 0.90155 0.91527 0.91524 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.45 113.37 1.18 1.46 16 2 O -0.36 -5.73 10.27 -58.84 -0.60 -6.34 16 3 C 0.55 11.21 7.73 68.67 0.53 11.74 16 4 O -0.53 -13.04 16.55 19.23 0.32 -12.73 16 5 C -0.34 -6.57 6.32 22.80 0.14 -6.43 16 6 C 0.17 3.37 11.07 84.53 0.94 4.30 16 7 N -0.51 -11.40 9.76 -198.59 -1.94 -13.34 16 8 C 0.00 0.10 7.45 130.46 0.97 1.07 16 9 S 0.04 0.79 22.29 -56.49 -1.26 -0.47 16 10 C -0.09 -2.19 5.13 71.98 0.37 -1.82 16 11 C -0.08 -2.21 5.22 30.59 0.16 -2.05 16 12 C -0.09 -3.26 5.67 71.98 0.41 -2.85 16 13 S -0.19 -9.76 21.44 -56.49 -1.21 -10.97 16 14 C -0.54 -30.69 9.50 67.95 0.65 -30.04 16 15 H 0.07 4.02 7.80 -2.91 -0.02 4.00 16 16 C 0.02 0.91 5.49 84.86 0.47 1.38 16 17 N -0.91 -54.02 13.22 21.65 0.29 -53.74 16 18 Si 0.99 43.61 29.55 68.60 2.03 45.64 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 S 0.33 5.20 22.96 -56.49 -1.30 3.91 16 23 H 0.06 0.63 8.13 -2.38 -0.02 0.62 16 24 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 25 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.20 3.52 8.04 -2.91 -0.02 3.50 16 27 H 0.10 2.36 8.14 -2.40 -0.02 2.34 16 28 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.07 2.49 8.14 -2.40 -0.02 2.47 16 32 H 0.07 2.49 8.14 -2.40 -0.02 2.47 16 33 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -69.05 338.80 3.27 -65.78 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.13 Total: 5.50 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 5.82 Total: -23.24 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: -1.65 Total: -67.08 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.29 Total: -19.06 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -3.77 Total: -7.53 kcal Total: -69.05 3.27 -65.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829680666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.891 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds