Wall clock time and date at job start Tue Mar 31 2020 12:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.36690 * 125.16925 * 135.64341 * 3 2 1 5 5 C 1.36884 * 114.70373 * 179.97438 * 4 3 2 6 6 C 1.36486 * 114.76643 * 0.02562 * 5 4 3 7 7 C 1.47617 * 125.14976 * 180.26423 * 6 5 4 8 8 C 1.34869 * 122.42092 * 179.45963 * 7 6 5 9 9 S 1.76202 * 108.25050 * 179.87437 * 8 7 6 10 10 C 1.76077 * 90.12389 * 0.31548 * 9 8 7 11 11 N 1.38918 * 125.22470 * 179.78214 * 10 9 8 12 12 C 1.34777 * 119.99983 * 0.03905 * 11 10 9 13 13 O 1.21279 * 120.00077 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99747 * 180.02562 * 12 11 10 15 15 C 1.50698 * 109.46944 * 179.97438 * 14 12 11 16 16 H 1.07992 * 120.00272 * 359.97438 * 15 14 12 17 17 C 1.37880 * 119.99767 * 180.02562 * 15 14 12 18 18 N 1.31523 * 120.00012 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99894 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46843 * 90.00022 * 19 17 15 21 21 H 1.48501 * 109.47028 * 209.99794 * 19 17 15 22 22 H 1.48497 * 109.47244 * 330.00062 * 19 17 15 23 23 N 1.29563 * 109.54184 * 359.81220 * 10 9 8 24 24 S 1.75832 * 125.17292 * 315.61289 * 3 2 1 25 25 H 1.08007 * 122.64732 * 359.97438 * 4 3 2 26 26 H 1.08003 * 122.61542 * 180.02562 * 5 4 3 27 27 H 1.08002 * 125.87861 * 359.97438 * 8 7 6 28 28 H 0.96998 * 119.99714 * 180.02562 * 11 10 9 29 29 H 1.09003 * 109.46810 * 300.00147 * 14 12 11 30 30 H 1.09001 * 109.47352 * 59.99562 * 14 12 11 31 31 H 0.96998 * 119.99525 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3549 0.7999 -0.7812 5 6 4.7011 0.6231 -0.6070 6 6 5.0386 -0.3224 0.3176 7 6 6.4183 -0.6932 0.6893 8 6 6.6892 -1.6305 1.6204 9 16 8.4394 -1.7759 1.7641 10 6 8.6474 -0.5287 0.5387 11 7 9.8689 -0.0535 0.0784 12 6 11.0174 -0.5537 0.5759 13 8 10.9843 -1.4183 1.4257 14 6 12.3424 -0.0377 0.0769 15 6 13.4608 -0.7550 0.7882 16 1 13.2347 -1.5087 1.5278 17 6 14.7727 -0.4481 0.4954 18 7 15.0481 0.4701 -0.4050 19 14 16.1590 -1.3367 1.3775 20 1 16.5329 -2.5533 0.6126 21 1 17.3357 -0.4370 1.4827 22 1 15.7104 -1.7261 2.7385 23 7 7.4862 -0.1220 0.1328 24 16 3.5813 -1.0260 1.0054 25 1 2.9468 1.5145 -1.4807 26 1 5.4385 1.1878 -1.1581 27 1 5.9591 -2.1961 2.1803 28 1 9.8953 0.6381 -0.6011 29 1 12.4207 -0.2150 -0.9957 30 1 12.4136 1.0319 0.2745 31 1 15.9711 0.6857 -0.6112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194021.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:11 Heat of formation + Delta-G solvation = 71.215608 kcal Electronic energy + Delta-G solvation = -19458.406228 eV Core-core repulsion = 16151.729285 eV Total energy + Delta-G solvation = -3306.676943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 319.019 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.08565 -39.16763 -38.05892 -36.57585 -34.63156 -33.20688 -31.30231 -29.53498 -28.79377 -25.82475 -24.77900 -23.17816 -21.14981 -20.93246 -20.57650 -18.69733 -17.59721 -16.90494 -16.58144 -16.16020 -15.74311 -15.49670 -15.28954 -14.67788 -14.59662 -14.04611 -14.03159 -13.60703 -13.36967 -13.21053 -13.06669 -12.75862 -12.34303 -12.29806 -11.63625 -11.49933 -11.33965 -10.96604 -10.93332 -10.78019 -10.16674 -9.76341 -9.53787 -9.47264 -9.31678 -9.01820 -8.97321 -8.62293 -7.88464 -6.25419 -4.27611 -0.21809 0.72410 0.86195 1.13912 1.34143 1.86525 1.90762 2.54109 2.78676 2.92576 2.97695 3.24135 3.30653 3.31070 3.37037 3.55570 4.26699 4.34308 4.70612 4.98655 5.06468 5.13535 5.25858 5.53537 5.64624 5.68692 5.88992 5.98670 6.35161 6.80022 6.98111 7.06251 7.16105 7.73675 7.77117 7.98383 8.42355 8.82320 9.38742 10.86339 Molecular weight = 319.02amu Principal moments of inertia in cm(-1) A = 0.047314 B = 0.002287 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.652025 B =12240.125117 C =12816.617953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.286 3.714 3 C -0.172 4.172 4 C -0.052 4.052 5 C -0.121 4.121 6 C -0.085 4.085 7 C 0.145 3.855 8 C -0.310 4.310 9 S 0.222 5.778 10 C 0.301 3.699 11 N -0.632 5.632 12 C 0.514 3.486 13 O -0.501 6.501 14 C 0.014 3.986 15 C -0.519 4.519 16 H 0.078 0.922 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.271 1.271 23 N -0.511 5.511 24 S 0.223 5.777 25 H 0.154 0.846 26 H 0.161 0.839 27 H 0.173 0.827 28 H 0.424 0.576 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.003 -0.391 0.283 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.030 4.030 3 C -0.293 4.293 4 C -0.088 4.088 5 C -0.152 4.152 6 C -0.207 4.207 7 C 0.012 3.988 8 C -0.454 4.454 9 S 0.474 5.526 10 C -0.069 4.069 11 N -0.284 5.284 12 C 0.305 3.695 13 O -0.373 6.373 14 C -0.025 4.025 15 C -0.557 4.557 16 H 0.096 0.904 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.732 3.268 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.195 1.195 23 N -0.235 5.235 24 S 0.491 5.509 25 H 0.171 0.829 26 H 0.178 0.822 27 H 0.190 0.810 28 H 0.263 0.737 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.068 -2.278 2.143 20.310 hybrid contribution 0.623 1.370 -1.358 2.027 sum -19.445 -0.909 0.785 19.482 Atomic orbital electron populations 1.81308 1.11165 1.08143 1.08219 1.24286 0.90899 0.93920 0.93898 1.20208 0.89105 1.09729 1.10243 1.20511 0.92281 0.98023 0.98009 1.20476 0.95671 0.99408 0.99610 1.22900 0.94213 1.01708 1.01914 1.17177 0.89442 0.96013 0.96149 1.27382 1.03458 1.07241 1.07271 1.86227 0.94804 1.35200 1.36383 1.24278 0.89117 0.96677 0.96849 1.43777 1.01285 1.41105 1.42201 1.22909 0.85518 0.80698 0.80340 1.90498 1.85349 1.30475 1.30995 1.19326 0.85117 0.98973 0.99083 1.21068 0.89286 1.22164 1.23190 0.90383 1.24999 0.99028 0.95127 0.95167 1.69942 1.19872 1.31359 1.32254 0.86365 0.80855 0.79326 0.80209 1.20457 1.21130 1.19550 1.66465 0.95827 1.30652 1.30526 1.84131 0.93004 1.36206 1.37540 0.82874 0.82199 0.81002 0.73663 0.92235 0.92222 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.86 18.54 41.84 0.78 -4.08 16 2 C 0.29 2.80 15.81 -22.47 -0.36 2.44 16 3 C -0.17 -1.42 6.31 -38.22 -0.24 -1.67 16 4 C -0.05 -0.38 10.11 -40.63 -0.41 -0.79 16 5 C -0.12 -1.07 9.95 -40.70 -0.41 -1.48 16 6 C -0.08 -0.86 6.43 -36.39 -0.23 -1.10 16 7 C 0.14 1.81 6.66 -84.61 -0.56 1.25 16 8 C -0.31 -3.64 10.81 29.54 0.32 -3.32 16 9 S 0.22 3.21 20.52 -107.50 -2.21 1.00 16 10 C 0.30 4.60 8.38 -87.48 -0.73 3.87 16 11 N -0.63 -9.79 5.40 -11.87 -0.06 -9.85 16 12 C 0.51 9.95 7.78 -10.99 -0.09 9.86 16 13 O -0.50 -10.80 12.96 5.56 0.07 -10.73 16 14 C 0.01 0.31 5.46 -29.04 -0.16 0.15 16 15 C -0.52 -13.51 8.92 -34.44 -0.31 -13.81 16 16 H 0.08 2.10 6.75 -52.49 -0.35 1.75 16 17 C 0.06 1.55 5.46 -17.81 -0.10 1.45 16 18 N -0.90 -24.27 13.29 55.43 0.74 -23.53 16 19 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 N -0.51 -7.24 10.41 -10.43 -0.11 -7.35 16 24 S 0.22 1.80 22.62 -107.50 -2.43 -0.63 16 25 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 26 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 27 H 0.17 1.52 7.81 -52.49 -0.41 1.11 16 28 H 0.42 5.40 8.82 -40.82 -0.36 5.04 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -29.43 320.77 -8.63 -38.06 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -1.95 Total: -0.15 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -3.27 Total: -3.14 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 1.34 Total: -44.81 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.07 Total: -10.73 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -4.64 Total: 0.37 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.43 -8.63 -38.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194021.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.279 kcal (2) G-P(sol) polarization free energy of solvation -29.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds