Wall clock time and date at job start Tue Mar 31 2020 12:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00274 * 2 1 4 4 H 1.48504 * 109.46768 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46958 * 300.00018 * 3 2 1 6 6 H 1.48493 * 109.46890 * 60.00010 * 3 2 1 7 7 C 1.37882 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00410 * 180.27480 * 7 2 1 9 9 C 1.50704 * 119.99642 * 0.02562 * 7 2 1 10 10 C 1.53937 * 113.73129 * 278.76410 * 9 7 2 11 11 N 1.48194 * 86.09708 * 221.95818 * 10 9 7 12 12 C 1.46904 * 111.06706 * 137.52166 * 11 10 9 13 13 C 1.50705 * 109.46858 * 76.68019 * 12 11 10 14 14 C 1.38339 * 119.99499 * 263.05929 * 13 12 11 15 15 Cl 1.73599 * 120.00300 * 0.02562 * 14 13 12 16 16 C 1.38343 * 119.99488 * 179.77014 * 14 13 12 17 17 C 1.38333 * 119.99944 * 0.50802 * 16 14 13 18 18 Cl 1.73601 * 119.99897 * 179.72875 * 17 16 14 19 19 C 1.38340 * 120.00497 * 359.74702 * 17 16 14 20 20 C 1.38333 * 120.00070 * 83.33747 * 13 12 11 21 21 Cl 1.73596 * 120.00148 * 0.02562 * 20 13 12 22 22 C 1.47956 * 90.80273 * 24.60138 * 11 10 9 23 23 H 0.97007 * 119.99973 * 0.02562 * 1 2 3 24 24 H 1.09004 * 112.93930 * 50.33391 * 9 7 2 25 25 H 1.08999 * 113.75869 * 336.23656 * 10 9 7 26 26 H 1.08998 * 113.75827 * 107.60735 * 10 9 7 27 27 H 1.08995 * 109.46939 * 196.67535 * 12 11 10 28 28 H 1.08993 * 109.47187 * 316.67367 * 12 11 10 29 29 H 1.08001 * 119.99685 * 180.23727 * 16 14 13 30 30 H 1.07998 * 120.00561 * 179.97438 * 19 17 16 31 31 H 1.08993 * 113.76206 * 221.08592 * 22 11 10 32 32 H 1.09000 * 113.76147 * 89.71275 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0050 9 6 1.2509 -2.4992 0.0005 10 6 0.7546 -2.9280 1.3932 11 7 1.1883 -4.2938 1.0157 12 6 1.8759 -4.9569 2.1318 13 6 0.8595 -5.4233 3.1420 14 6 0.5845 -4.6487 4.2547 15 17 1.4096 -3.1391 4.4870 16 6 -0.3521 -5.0746 5.1796 17 6 -1.0058 -6.2800 4.9971 18 17 -2.1758 -6.8178 6.1614 19 6 -0.7269 -7.0572 3.8871 20 6 0.2058 -6.6287 2.9595 21 17 0.5567 -7.6045 1.5673 22 6 2.1607 -3.7400 0.0478 23 1 -0.4850 0.8401 -0.0004 24 1 0.4838 -2.5469 -0.7725 25 1 1.3264 -2.4971 2.2150 26 1 -0.3228 -2.8289 1.5251 27 1 2.4348 -5.8140 1.7564 28 1 2.5622 -4.2544 2.6045 29 1 -0.5696 -4.4680 6.0463 30 1 -1.2369 -7.9984 3.7449 31 1 2.2047 -4.2884 -0.8931 32 1 3.1446 -3.5470 0.4754 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143794570.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:40 Heat of formation + Delta-G solvation = 37.943321 kcal Electronic energy + Delta-G solvation = -19722.417305 eV Core-core repulsion = 16375.484554 eV Total energy + Delta-G solvation = -3346.932751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.999 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.99457 -38.43170 -36.93372 -36.76777 -36.09140 -33.09648 -31.96099 -30.91299 -28.46931 -25.64744 -24.94336 -23.18010 -23.03537 -21.08128 -18.59666 -17.66827 -16.73350 -16.44790 -15.74152 -15.04159 -14.62476 -14.51975 -14.36322 -14.14977 -13.73262 -13.20583 -12.66117 -12.45990 -12.35777 -12.04764 -11.85480 -11.61323 -11.45609 -11.30616 -11.00699 -10.87872 -10.78249 -10.65913 -10.56236 -10.30470 -9.74713 -9.32943 -9.01185 -8.90969 -8.67380 -8.40371 -7.85318 -6.04343 -4.08627 0.73711 0.75947 1.48620 2.12223 2.22192 3.12143 3.27276 3.35951 3.39023 4.40247 4.54594 4.62818 4.67154 5.00139 5.01088 5.04693 5.26688 5.50190 5.69883 5.71549 5.85342 5.99114 6.15226 6.16331 6.37118 6.52341 6.66806 6.77439 7.16626 7.21288 7.73975 7.90512 8.05117 8.37613 8.93874 9.56217 11.05058 Molecular weight = 319.00amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.004204 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.377079 B = 6658.523495 C = 7605.957091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.039 3.961 10 C 0.008 3.992 11 N -0.478 5.478 12 C 0.047 3.953 13 C -0.041 4.041 14 C -0.011 4.011 15 Cl -0.030 7.030 16 C -0.100 4.100 17 C -0.021 4.021 18 Cl -0.055 7.055 19 C -0.103 4.103 20 C 0.002 3.998 21 Cl -0.037 7.037 22 C 0.001 3.999 23 H 0.260 0.740 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.067 0.933 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 -14.313 11.061 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.020 3.980 10 C -0.121 4.121 11 N -0.201 5.201 12 C -0.081 4.081 13 C -0.043 4.043 14 C -0.039 4.039 15 Cl -0.001 7.001 16 C -0.119 4.119 17 C -0.048 4.048 18 Cl -0.026 7.026 19 C -0.122 4.122 20 C -0.026 4.026 21 Cl -0.008 7.008 22 C -0.128 4.128 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.085 0.915 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.240 -14.685 10.848 18.299 hybrid contribution 0.917 1.456 0.500 1.792 sum -0.323 -13.228 11.349 17.432 Atomic orbital electron populations 1.69975 1.05931 1.26531 1.49773 1.24984 0.94768 0.98997 0.94739 0.86627 0.80245 0.84045 0.77656 1.19732 1.20909 1.21044 1.21110 0.92754 0.90331 1.51311 0.92451 1.20302 0.93663 0.90952 0.93075 1.24321 1.00127 0.86027 1.01600 1.68686 1.25667 1.17623 1.08129 1.21723 0.93483 1.00509 0.92361 1.19703 0.97976 0.92099 0.94549 1.20554 0.97439 0.90068 0.95846 1.98423 1.76858 1.28623 1.96184 1.20931 0.95522 0.95423 1.00070 1.20433 0.95813 0.95530 0.93044 1.98382 1.56862 1.89728 1.57643 1.20927 0.97926 1.00957 0.92407 1.20373 0.98217 0.93270 0.90768 1.98389 1.93778 1.68719 1.39879 1.24072 0.95282 0.97919 0.95493 0.92978 0.92416 0.91447 0.91842 0.89795 0.92301 0.83440 0.83499 0.91451 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.30 13.29 55.43 0.74 -24.57 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -13.85 8.77 -34.44 -0.30 -14.15 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.04 0.96 3.60 -90.83 -0.33 0.64 16 10 C 0.01 0.17 6.73 -2.63 -0.02 0.15 16 11 N -0.48 -9.34 6.21 -239.59 -1.49 -10.82 16 12 C 0.05 0.78 4.15 -4.97 -0.02 0.76 16 13 C -0.04 -0.62 5.15 -104.55 -0.54 -1.16 16 14 C -0.01 -0.16 6.19 -39.51 -0.24 -0.40 16 15 Cl -0.03 -0.46 24.52 -51.86 -1.27 -1.73 16 16 C -0.10 -1.23 9.61 -39.51 -0.38 -1.61 16 17 C -0.02 -0.24 6.32 -39.51 -0.25 -0.49 16 18 Cl -0.06 -0.55 28.96 -51.86 -1.50 -2.05 16 19 C -0.10 -1.20 9.61 -39.51 -0.38 -1.58 16 20 C 0.00 0.02 6.31 -39.51 -0.25 -0.23 16 21 Cl -0.04 -0.48 27.43 -51.86 -1.42 -1.91 16 22 C 0.00 0.01 7.54 -2.76 -0.02 -0.01 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 25 H 0.07 1.50 5.21 -51.93 -0.27 1.23 16 26 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.08 1.27 7.20 -51.93 -0.37 0.90 16 28 H 0.06 0.99 6.20 -51.93 -0.32 0.67 16 29 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.11 7.84 -51.93 -0.41 0.71 16 LS Contribution 313.81 15.07 4.73 4.73 Total: -1.00 -27.54 313.81 -11.10 -38.63 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -3.03 Total: -1.87 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.83 Total: -16.32 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.75 Total: -35.39 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -4.20 Total: -5.69 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.54 -11.10 -38.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143794570.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.577 kcal (2) G-P(sol) polarization free energy of solvation -27.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds